21ff3c9ac1
* pbbam: new package * pbbam: updated version * pbbam: added option tests handling * pbbam: flake8 edits
63 lines
2.5 KiB
Python
63 lines
2.5 KiB
Python
##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Pbbam(CMakePackage):
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"""The pbbam software package provides components to create, query,
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& edit PacBio BAM files and associated indices.
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These components include a core C++ library,
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bindings for additional languages, and command-line utilities."""
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homepage = "https://github.com/PacificBiosciences/pbbam"
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url = "https://github.com/PacificBiosciences/pbbam/archive/0.18.0.tar.gz"
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version('0.18.0', 'abbb687b1e7ea08916c26da828e11384')
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depends_on('zlib')
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depends_on('boost@1.55.0:')
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depends_on('htslib@1.3.1:')
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depends_on('doxygen+graphviz')
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conflicts('%gcc@:5.2.0')
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def cmake_args(self):
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options = []
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if self.run_tests:
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options.append('-DPacBioBAM_build_tests:BOOL=ON')
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else:
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options.append('-DPacBioBAM_build_tests:BOOL=OFF')
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return options
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def install(self, spec, prefix):
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install_tree('spack-build/bin', prefix.bin)
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install_tree('spack-build/lib', prefix.lib)
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install_tree('include/pbbam', prefix.include.pbbam)
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def setup_dependent_environment(self, spack_env, run_env, dependent_spec):
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spack_env.set('PacBioBAM_LIBRARIES', self.prefix.lib)
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spack_env.set('PacBioBAM_INCLUDE_DIRS', self.prefix.include)
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