39 lines
1.4 KiB
Python
39 lines
1.4 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
|
|
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
#
|
|
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
|
|
from spack import *
|
|
import os
|
|
|
|
|
|
class Figtree(Package):
|
|
"""FigTree is designed as a graphical viewer of phylogenetic trees and
|
|
as a program for producing publication-ready figures. As with most of
|
|
my programs, it was written for my own needs so may not be as polished
|
|
and feature-complete as a commercial program. In particular it is
|
|
designed to display summarized and annotated trees produced by BEAST."""
|
|
|
|
homepage = "https://github.com/rambaut/figtree"
|
|
url = "https://github.com/rambaut/figtree/releases/download/v1.4.3/FigTree_v1.4.3.tgz"
|
|
|
|
version('1.4.3', sha256='f497d4dd3a6d220f6b62495b6f47a12ade50d87dbd8d6089f168e94d202f937b')
|
|
|
|
depends_on('java', type='run')
|
|
|
|
def patch(self):
|
|
# we have to change up the executable to point to the right program
|
|
filter_file('lib/figtree.jar',
|
|
join_path(self.spec.prefix.lib, 'figtree.jar'),
|
|
'bin/figtree', string=True)
|
|
|
|
# also set proper executable flags
|
|
os.chmod('bin/figtree', 0o775)
|
|
|
|
def install(self, spec, prefix):
|
|
mkdirp(prefix.bin)
|
|
install_tree('bin', prefix.bin)
|
|
|
|
mkdirp(prefix.lib)
|
|
install_tree('lib', prefix.lib)
|