27 lines
1.0 KiB
Python
27 lines
1.0 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RBamsignals(RPackage):
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"""This package allows to efficiently obtain count vectors
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from indexed bam files. It counts the number of reads in given
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genomic ranges and it computes reads profiles and coverage
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profiles. It also handles paired-end data."""
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homepage = "https://www.bioconductor.org/packages/bamsignals/"
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git = "https://git.bioconductor.org/packages/bamsignals.git"
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version('1.8.0', commit='b123b83e8e026c9ec91209d4498aff3e95a5de23')
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depends_on('r@3.4.0:3.4.9', when='@1.8.0')
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depends_on('r-biocgenerics', type=('build', 'run'))
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depends_on('r-rcpp', type=('build', 'run'))
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depends_on('r-iranges', type=('build', 'run'))
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depends_on('r-genomicranges', type=('build', 'run'))
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depends_on('r-zlibbioc', type=('build', 'run'))
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depends_on('r-rhtslib', type=('build', 'run'))
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