41 lines
1.9 KiB
Python
41 lines
1.9 KiB
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
|
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
#
|
|
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
|
|
from spack import *
|
|
|
|
|
|
class RPathview(RPackage):
|
|
"""a tool set for pathway based data integration and visualization.
|
|
|
|
Pathview is a tool set for pathway based data integration and
|
|
visualization. It maps and renders a wide variety of biological data on
|
|
relevant pathway graphs. All users need is to supply their data and
|
|
specify the target pathway. Pathview automatically downloads the pathway
|
|
graph data, parses the data file, maps user data to the pathway, and
|
|
render pathway graph with the mapped data. In addition, Pathview also
|
|
seamlessly integrates with pathway and gene set (enrichment) analysis
|
|
tools for large-scale and fully automated analysis."""
|
|
|
|
bioc = "pathview"
|
|
|
|
version('1.34.0', commit='a8788902a3bb047f8ee785966e57f84596076bbd')
|
|
version('1.30.1', commit='a6a32395db408798cb076894678e90148bae6bf4')
|
|
version('1.24.0', commit='e4401c1425c980ce2e6e478a4602a9f6d36ccd8d')
|
|
version('1.22.3', commit='ff86f9e166a5b03bbed1a0ad276778958c3045ce')
|
|
version('1.20.0', commit='a195afa6ba6c7917af2c7f77170f0644c46880c7')
|
|
version('1.18.2', commit='d2048981696564ec75f661ed665977d3a6e09188')
|
|
version('1.16.7', commit='fc560ed15ef7393a73d35e714716cc24dc835339')
|
|
|
|
depends_on('r+X', type=('build', 'run'))
|
|
depends_on('r@2.10:', type=('build', 'run'))
|
|
depends_on('r-kegggraph', type=('build', 'run'))
|
|
depends_on('r-xml', type=('build', 'run'))
|
|
depends_on('r-rgraphviz', type=('build', 'run'))
|
|
depends_on('r-graph', type=('build', 'run'))
|
|
depends_on('r-png', type=('build', 'run'))
|
|
depends_on('r-annotationdbi', type=('build', 'run'))
|
|
depends_on('r-org-hs-eg-db', type=('build', 'run'))
|
|
depends_on('r-keggrest', type=('build', 'run'))
|