2264e30d99
* Update URL parsing regexes and tests * Get rid of no longer used README * Merge py-udunits and py-cf-units * netcdf -> netcdf-c * setup_environment -> setup_*_environment * Fix doc tests * Few last minute fixes * Simplify prefix removal copypasta
37 lines
1.2 KiB
Python
37 lines
1.2 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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import glob
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class Autofact(Package):
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"""An Automatic Functional Annotation and Classification Tool"""
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homepage = "http://megasun.bch.umontreal.ca/Software/AutoFACT.htm"
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url = "http://megasun.bch.umontreal.ca/Software/AutoFACT_v3_4.tar"
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version('3_4', sha256='1465d263b19adb42f01f6e636ac40ef1c2e3dbd63461f977b89da9493fe9c6f4')
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depends_on('perl', type='run')
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depends_on('perl-bioperl', type='run')
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depends_on('perl-io-string', type='run')
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depends_on('perl-libwww-perl', type='run')
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depends_on('blast-legacy', type='run')
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def patch(self):
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with working_dir('scripts'):
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files = glob.iglob("*.pl")
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for file in files:
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change = FileFilter(file)
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change.filter('usr/bin/perl', 'usr/bin/env perl')
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def install(self, spec, prefix):
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install_tree(self.stage.source_path, prefix)
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def setup_run_environment(self, env):
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env.prepend_path('PATH', self.prefix.scripts)
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env.set('PATH2AUTOFACT', self.prefix)
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