38 lines
1.8 KiB
Python
38 lines
1.8 KiB
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class RAcde(RPackage):
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"""Artificial Components Detection of Differentially Expressed Genes.
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This package provides a multivariate inferential analysis method for
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detecting differentially expressed genes in gene expression data. It
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uses artificial components, close to the data's principal components but
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with an exact interpretation in terms of differential genetic
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expression, to identify differentially expressed genes while controlling
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the false discovery rate (FDR). The methods on this package are
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described in the vignette or in the article 'Multivariate Method for
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Inferential Identification of Differentially Expressed Genes in Gene
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Expression Experiments' by J. P. Acosta, L. Lopez-Kleine and S. Restrepo
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(2015, pending publication)."""
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bioc = "acde"
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version("1.30.0", commit="4c16b9fd6c91a433bf1345252e022571c4983cb5")
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version("1.28.0", commit="0edccca7be2475fa2ae3b3c36d0d64924c37b3c0")
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version("1.26.0", commit="dfef9a435062e948efd5eda22942a0d500baa992")
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version("1.24.0", commit="0c3c4d47af7eaff37420032ea5245743a65124cf")
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version("1.20.0", commit="cefb4f2e2b0ef3c5f51944c0ece7a71294020350")
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version("1.14.0", commit="6017c7436a46f186b2a3cea9d2b93274f6dd3417")
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version("1.12.0", commit="f6ce5926ac915c2d73436f47daf7f9791645dad4")
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version("1.10.0", commit="2c303dec45f3c70bf333a6eacae568a08d5ca010")
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version("1.8.0", commit="f7fc3e1dce958445f920d3b28b56abde70bfb9de")
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version("1.6.0", commit="244c81f435a077bf7895ea565fa6695e8b079f67")
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depends_on("r@3.3:", type=("build", "run"))
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depends_on("r-boot@1.3:", type=("build", "run"))
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