31 lines
1.2 KiB
Python
31 lines
1.2 KiB
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class RCondop(RPackage):
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"""Condition-Dependent Operon Predictions.
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An implementation of the computational strategy for the comprehensive
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analysis of condition-dependent operon maps in prokaryotes proposed by
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Fortino et al. (2014) <doi:10.1186/1471-2105-15-145>. It uses RNA-seq
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transcriptome profiles to improve prokaryotic operon map inference."""
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cran = "CONDOP"
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version("1.0", sha256="3a855880f5c6b33f949c7e6de53c8e014b4d72b7024a93878b344d3e52b5296a")
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depends_on("r-mclust", type=("build", "run"))
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depends_on("r-earth", type=("build", "run"))
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depends_on("r-plyr", type=("build", "run"))
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depends_on("r-seqinr", type=("build", "run"))
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depends_on("r-randomforest", type=("build", "run"))
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depends_on("r-rminer", type=("build", "run"))
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depends_on("r-genomicranges", type=("build", "run"))
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depends_on("r-genomeinfodb", type=("build", "run"))
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depends_on("r-s4vectors", type=("build", "run"))
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depends_on("r-iranges", type=("build", "run"))
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