32 lines
1.0 KiB
Python
32 lines
1.0 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Xhmm(MakefilePackage):
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"""The XHMM C++ software suite was written to
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call copy number variation (CNV) from next-generation
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sequencing projects, where exome capture was used
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(or targeted sequencing, more generally)."""
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homepage = "http://atgu.mgh.harvard.edu/xhmm/index.shtml"
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git = "https://bitbucket.org/statgen/xhmm.git"
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version('20160104', commit='cc14e528d90932f059ac4fe94e869e81221fd732')
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depends_on('lapack')
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def edit(self, spec, prefix):
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filter_file('GCC', 'CC', 'sources/hmm++/config_rules.Makefile')
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filter_file('GCC =gcc', '', 'sources/hmm++/config_defs.Makefile')
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def build(self, spec, prefix):
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make('LAPACK_LIBS=%s' % ''.join(spec['lapack'].libs.names))
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def install(self, spec, prefix):
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mkdir(prefix.bin)
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install('xhmm', prefix.bin)
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