健美猞猁 2601fd66f6 Bump gradle to 4.8.1. (#8625)		2018-07-02 12:46:46 -05:00
..
abinit	abinit: added version 8.8.2 (#8294)	2018-05-28 08:11:43 -05:00
abyss	Fix digest for abyss@1.5.2 (#8341)	2018-06-01 15:06:45 -05:00
accfft
ack
activeharmony
adept-utils
adios	ADIOS: Revert Patch (#8463)	2018-06-13 14:42:13 -05:00
adios2
adlbx
adol-c
aegean
albany	Albany: Add Albany package. (#8332)	2018-06-18 13:50:26 -05:00
albert
alglib
allinea-forge
allinea-reports
allpaths-lg
alquimia
alsa-lib
amg
amg2013
amp
ampliconnoise
amrex	Correcting position independent code setting for boxlib and amrex. (#8537)	2018-06-21 16:37:10 -05:00
amrvis	Add Amrvis package (#8590)	2018-07-02 11:42:09 -05:00
andi
angsd
ant
antlr	antlr: Turn off CSharp (#8157)	2018-05-18 10:39:30 -07:00
ants
ape
apex
applewmproto
appres
apr
apr-util
aragorn
archer
argp-standalone
argtable
arlecore
armadillo
arpack-ng	arpack-ng: add 3.6.0 (#8433)	2018-06-10 15:16:42 -05:00
ascent
asciidoc
aspa
aspcud
aspect	new package: ASPECT (#8459)	2018-06-13 14:42:29 -05:00
aspell	views: packages can customize how they're added to views (#7152)	2018-06-26 16:14:05 -07:00
aspell6-de
aspell6-en
aspell6-es
assimp
astra
astral
astyle	astyle: add 3.1 (#8137)	2018-05-15 09:43:27 -05:00
atk
atlas
atom-dft
atompaw
atop
augustus
autoconf
autodock-vina
autogen
automaded
automake
axel	A new package: axel. (#8434)	2018-06-10 15:16:16 -05:00
bamtools
bamutil
barrnap
bash
bash-completion
bats
bazel	Add latest versions of bazel (#8250)	2018-05-23 07:27:45 -05:00
bbcp
bbmap
bc
bcftools
bcl2fastq2
bdftopcf
bdw-gc
bear
beast1
beast2
bedops	Add info for bedops@v2.4.35 (#8310)	2018-05-29 14:46:42 -05:00
bedtools2
beforelight
benchmark
berkeley-db
bertini
bib2xhtml
bigreqsproto
binutils
bioawk
biopieces
bismark
bison
bitmap
blasr-libcpp	blasr-libcpp: new package (#8366)	2018-06-13 08:55:31 -05:00
blast-plus
blat
blaze
bliss
blitz
bmake	Add bmake 20180512 (#8221)	2018-05-21 15:58:11 -05:00
bml	latte: version bump (#8611)	2018-06-29 09:19:24 -05:00
bohrium
bookleaf-cpp	Update BookLeaf_Cpp and Typhon packages. (#8249)	2018-05-23 07:28:15 -05:00
boost	boost package: patch dirent for pgi and boost 1.67 (#8313)	2018-06-13 15:53:14 -07:00
boostmplcartesianproduct
bowtie
bowtie2
boxlib	Correcting position independent code setting for boxlib and amrex. (#8537)	2018-06-21 16:37:10 -05:00
bpp-core
bpp-phyl
bpp-seq
bpp-suite
bracken
braker
branson
breakdancer
breseq
brigand
bsseeker2
bucky
bumpversion
busco
butter
bwa
byobu
bzip2
c-blosc
c-lime
caffe
cairo
cairomm	new packages: workrave and its dependencies (#7753)	2018-06-21 18:25:26 -07:00
caliper	Add Caliper 1.7.0 and Gotcha 1.0.2 (#8572)	2018-06-27 17:21:23 -05:00
callpath
camellia	Added dependency for hdf5 version number (known incompatibility with 1.10). (#8337)	2018-05-31 20:29:44 -05:00
candle-benchmarks
cantera
canu
cap3
cares
cask
casper
catalyst
catch
cbench
cblas
cbtf	Add changes to the Krell packages with version updates and ranges for the latest release. (#8468)	2018-06-17 09:49:27 -05:00
cbtf-argonavis	Add changes to the Krell packages with version updates and ranges for the latest release. (#8468)	2018-06-17 09:49:27 -05:00
cbtf-argonavis-gui	Add changes to the Krell packages with version updates and ranges for the latest release. (#8468)	2018-06-17 09:49:27 -05:00
cbtf-krell	Add changes to the Krell packages with version updates and ranges for the latest release. (#8468)	2018-06-17 09:49:27 -05:00
cbtf-lanl	Add changes to the Krell packages with version updates and ranges for the latest release. (#8468)	2018-06-17 09:49:27 -05:00
ccache
cctools
cdbfasta
cdd
cddlib
cdhit
cdo
ceed	Balay/petsc remove boost dependency (#8508)	2018-06-24 10:52:14 -05:00
cereal
cfitsio	Add CFITSIO 3.450 (#8602)	2018-06-28 11:28:22 -05:00
cgal	cgal: added version 4.12 (#8252)	2018-05-23 10:11:03 -05:00
cgm
cgns
charliecloud
charm	Charm++: Add possibility to build git version (#8260)	2018-05-24 10:48:37 -05:00
check
chlorop
chombo	Add tags for ECP applications that are in Spack.	2018-06-21 16:07:47 -07:00
cistem
cityhash
clamr
clapack	New package: clapack (#7992)	2018-06-04 13:19:27 -05:00
cleaveland4
cleverleaf
clfft
clhep
clingo	compiler flags: add cxx98 standard support (#7601)	2018-06-08 13:49:31 -07:00
cloc
cloog
cloverleaf
cloverleaf3d
clustalo
clustalw
cmake	cmake: update package (#8539)	2018-06-21 15:34:33 -05:00
cmocka
cmor
cnmem
cnpy
cntk
cntk1bitsgd
codar-cheetah
coevp
cohmm
coinhsl
colm
colordiff
comd
compiz
compositeproto
conduit
constype
converge
coreutils	coreutils: add version 8.29	2018-06-24 16:39:04 -07:00
corset
cosmomc
cosp2
cp2k
cppad
cppcheck
cpprestsdk
cppunit
cppzmq
cpu-features
cpuinfo
cram
cryptopp	Add cryptopp 7.0.0 (#8224)	2018-05-21 11:52:25 -05:00
cscope
csdp
ctffind
cub
cube	Update scorep and friends to newest versions (#8171)	2018-05-17 19:52:01 -05:00
cuda	CUDA 9.2 (#8238)	2018-05-22 12:45:47 +02:00
cuda-memtest
cudnn
cufflinks
cups
curl	Add cURL 7.60.0 (#8210)	2018-05-20 15:04:28 -05:00
cvs
czmq
dakota
daligner
damageproto
damselfly
darshan-runtime
darshan-util
dash
datamash	Add info for datamash@1.3 (#8261)	2018-05-23 18:40:14 -05:00
dataspaces
davix	Add new package: davix (#8376)	2018-06-06 18:54:07 -05:00
dbus
dealii	dealii: add msg= to conflicts statements (#8509)	2018-06-21 18:24:05 +02:00
dealii-parameter-gui	new package: dealii-parameter-gui (#8456)	2018-06-13 08:44:10 -05:00
deconseq-standalone
dejagnu
delly2
denovogear
dia
dialign-tx
diamond
diffsplice
direnv
discovar
discovardenovo
dislin
dlpack
dmlc-core
dmxproto
docbook-xml
docbook-xsl
dos2unix
double-conversion
doxygen
dri2proto
dri3proto
dsdp
dsrc
dtcmp
dyninst	Add the ability to build the dyninst master branch under the develop version name. (#8455)	2018-06-13 13:35:32 -07:00
ea-utils
easybuild
ebms
eccodes
eclipse-gcj-parser	new package: pdftk (#8166)	2018-06-12 11:25:20 -07:00
ecp-proxy-apps
ed
editres
eigen
elasticsearch	Added elastic search (#8424)	2018-06-07 23:17:07 -05:00
elemental	Fix hydrogen@develop build (#8262)	2018-06-07 18:08:23 -05:00
elfutils	Add the ability to build the dyninst master branch under the develop version name. (#8455)	2018-06-13 13:35:32 -07:00
elk
elpa	elpa: add 2018.05.001.rc1 and 2017.11.001 (#8512)	2018-06-22 07:52:40 -05:00
emacs	Update package: add info for emacs@26.1 (#8302)	2018-05-30 10:36:20 -05:00
emboss
encodings
environment-modules
eospac	clean up version names (#8368)	2018-06-04 15:04:12 -05:00
es
esmf	add commented test dependencies (#8407)	2018-06-07 10:33:59 -05:00
essl	Add version 6.1. to ESSL spackage file. (#8170)	2018-05-17 15:04:28 -05:00
ethminer
etsf-io
everytrace
everytrace-example
evieext
exabayes
examinimd
exampm
exasp2
exmcutils
exodusii
exonerate
expat	libexpat: Fix for older systems, move to GitHub (#8135)	2018-05-17 20:04:57 -05:00
expect
express
extrae
exuberant-ctags
f90cache
fabtests
falcon
farmhash
fast-gbs	Create new package: fastgbs and its dependency platypus. (#8174)	2018-05-21 16:13:05 -05:00
fastjar
fastmath
fastme
fastphase
fastq-screen
fastqc	fastqc: Add version 0.11.7 (#8319)	2018-05-30 12:30:50 -05:00
fastqvalidator
fasttree
fastx-toolkit
fenics
fermi
fermikit
fermisciencetools	Fermi Science Tools: New package (#8126)	2018-06-07 14:07:39 -05:00
ferret
ffmpeg
fftw
fimpute
findutils
fio
fish
fixesproto
flac
flang	flang: add non-develop version (#8276)	2018-05-25 14:01:19 -05:00
flann	add commented test dependencies (#8407)	2018-06-07 10:33:59 -05:00
flash
flecsale
flecsi
flex	flex: use 2.6.3. by default (#8154)	2018-05-17 13:58:29 -07:00
flint
flit
fltk
flux
fluxbox
fmt
foam-extend
folly
font-adobe-75dpi
font-adobe-100dpi
font-adobe-utopia-75dpi
font-adobe-utopia-100dpi
font-adobe-utopia-type1
font-alias
font-arabic-misc
font-bh-75dpi
font-bh-100dpi
font-bh-lucidatypewriter-75dpi
font-bh-lucidatypewriter-100dpi
font-bh-ttf
font-bh-type1
font-bitstream-75dpi
font-bitstream-100dpi
font-bitstream-speedo
font-bitstream-type1
font-cronyx-cyrillic
font-cursor-misc
font-daewoo-misc
font-dec-misc
font-ibm-type1
font-isas-misc
font-jis-misc
font-micro-misc
font-misc-cyrillic
font-misc-ethiopic
font-misc-meltho
font-misc-misc
font-mutt-misc
font-schumacher-misc
font-screen-cyrillic
font-sony-misc
font-sun-misc
font-util
font-winitzki-cyrillic
font-xfree86-type1
fontcacheproto
fontconfig
fontsproto
fonttosfnt
fp16
fpc
fr-hit
freebayes
freeglut
freetype
fseq
fsl
fslsfonts
fstobdf
ftgl	Add new package: ftgl (#8416)	2018-06-07 08:48:27 -05:00
funhpc
fyba	Fix compilation of FYBA with GCC 6 (#8273)	2018-05-26 10:36:34 -05:00
gapbs
gapcloser
gapfiller
gasnet
gatk
gaussian
gawk
gblocks
gcc	Fix gcc@5.5.0 on OS X 10.13.5 (#8540)	2018-06-23 19:40:42 -05:00
gccmakedep
gccxml
gconf
gcta
gdal	Fix GDAL Python bindings and add import tests (#8482)	2018-06-15 10:14:50 -05:00
gdb
gdbm	gdbm: Get working on CentOS5 and Other Older Systems (#8134)	2018-05-21 16:24:38 -05:00
gdk-pixbuf
gdl	GDL and missing dependencies (#8283)	2018-06-08 08:35:28 -05:00
geant4
gearshifft
gemmlowp
genemark-et
genomefinisher
genometools
geopm	Package/geopm: Update to version 0.5.0 (#8487)	2018-06-15 08:17:17 -05:00
geos	Add Python/Ruby bindings to GEOS package (#8218)	2018-05-21 15:59:50 -05:00
gettext	Fix gettext: Problem with libxml2 (#8132)	2018-05-26 10:18:14 -05:00
gflags
ghost
ghostscript
ghostscript-fonts
giflib
git	Git's gitk needs TK's wish to be found in PATH (#8360)	2018-06-09 16:16:35 -05:00
git-imerge
git-lfs
gl2ps
glew
glfmultiples
glib	glib: Update to 2.56.1 (#8523)	2018-06-20 11:20:04 -05:00
glibmm	new packages: workrave and its dependencies (#7753)	2018-06-21 18:25:26 -07:00
glimmer
glm
global
globalarrays	Update GlobalArrays package to new releases (#7840)	2018-05-21 20:06:29 -05:00
globus-toolkit
glog
gloo
glpk
glproto
glvis	[GLVis] Add new version: 3.4 (#8454)	2018-06-13 08:42:45 -05:00
gmake	gmake: fix build with glibc 2.27 (#8344)	2018-06-01 10:47:13 -05:00
gmap-gsnap
gmime
gmp
gmsh
gnat
gnu-prolog
gnupg
gnuplot
gnutls
go	go: Update to 1.10.3 (#8426)	2018-06-08 07:35:43 -05:00
go-bootstrap
gobject-introspection	init: factor paths out of spack/__init__.py and into spack.paths module	2018-05-17 14:10:30 -07:00
googletest	googletest: add a shared variant for all supported versions (#8373)	2018-06-07 10:34:37 -05:00
gotcha	Add Caliper 1.7.0 and Gotcha 1.0.2 (#8572)	2018-06-27 17:21:23 -05:00
gource
gperf
gperftools
gplates	gplates: new package (#8336)	2018-06-13 08:57:52 -05:00
grackle
gradle	Bump gradle to 4.8.1. (#8625)	2018-07-02 12:46:46 -05:00
grandr
graph500
graphicsmagick	GDL and missing dependencies (#8283)	2018-06-08 08:35:28 -05:00
graphlib
graphmap
graphviz
grass	Package/grass (#8505)	2018-06-22 18:03:05 -05:00
grib-api
groff
gromacs	gromacs: added version 2018.1 (#8251)	2018-05-23 10:13:09 -05:00
gsl
gslib
gtkmm	new packages: workrave and its dependencies (#7753)	2018-06-21 18:25:26 -07:00
gtkorvo-atl
gtkorvo-cercs-env
gtkorvo-dill
gtkorvo-enet
gtkplus
gts
guidance
guile
gurobi
h5hut
h5part
h5utils
h5z-zfp
hacckernels
hadoop
hapcut2
hapdip
haploview
harfbuzz
harminv
hdf
hdf5	hdf5: add 1.10.2 (#8274)	2018-05-25 09:06:50 -05:00
hdf5-blosc
help2man
hepmc
heppdt
hic-pro	HiC-pro depends on python+ucs4. (#8564)	2018-06-25 12:04:00 -05:00
highfive
highwayhash
hiop
hisat2
hisea
hmmer
hoomd-blue
hpccg
hpctoolkit
hpctoolkit-externals
hpgmg
hpl
hpx
hpx5
hsakmt
hstr
htop
htslib
httpie
hub
hunspell
hwloc
hybpiper
hydra
hydrogen	Fix hydrogen@develop build (#8262)	2018-06-07 18:08:23 -05:00
hypre
i3
ibmisc
iceauth
icedtea
icet
ico
icu4c
id3lib
idba
igraph
igv
igvtools
ilmbase
image-magick
imake
imp
impute2
infernal
inputproto
intel
intel-daal
intel-gpu-tools
intel-ipp
intel-mkl
intel-mkl-dnn
intel-mpi
intel-parallel-studio
intel-tbb	Update intel-tbb to 2018.3 and improve version URLs, dependencies and patching. (#7932)	2018-06-07 23:16:31 -05:00
intel-xed
intltool
ior
iozone
ipopt
isaac	Package: ISAAC 1.4.0 (#8447)	2018-06-12 11:11:32 -05:00
isaac-server	Package: ISAAC 1.4.0 (#8447)	2018-06-12 11:11:32 -05:00
isl
itstool
itsx
jags
jansson
jasper	Add JasPer 2.0.14 (#8207)	2018-05-26 10:37:48 -05:00
jbigkit
jchronoss
jdk
jellyfish
jemalloc
jmol
jq
json-c	gplates: new package (#8336)	2018-06-13 08:57:52 -05:00
json-cwx
json-glib
jsoncpp	add commented test dependencies (#8407)	2018-06-07 10:33:59 -05:00
judy
julia
k8
kahip
kaiju
kaks-calculator
kaldi
kallisto
kbproto
kdiff3
kealib	Add kealib 1.4.9 (#8597)	2018-06-28 10:51:30 -05:00
kentutils
kmergenie
kokkos	kokkos: add support for version 2.7.00 of kokkos (#8521)	2018-06-23 12:12:12 -05:00
kraken
krb5
krims
kripke
kvasir-mpl
laghos
lammps	Add tags for ECP applications that are in Spack.	2018-06-21 16:07:47 -07:00
last
latte	latte: version bump (#8611)	2018-06-29 09:19:24 -05:00
launchmon
lazyten
lbann	Fix hydrogen@develop build (#8262)	2018-06-07 18:08:23 -05:00
lbxproxy
lcals
lcms	Add lcms 2.9 (#8219)	2018-05-21 15:59:11 -05:00
ldc
ldc-bootstrap
legion	legion: version bump (#8352)	2018-06-02 19:27:46 -06:00
leveldb
lftp
libaec
libaio
libapplewm
libarchive
libassuan
libatomic-ops
libbeagle
libbsd
libbson
libcanberra
libcap
libceed
libcerf
libcheck
libcint
libcircle
libconfig
libcroco
libctl
libdivsufsort
libdmx
libdrm
libdwarf	Add the ability to build the dyninst master branch under the develop version name. (#8455)	2018-06-13 13:35:32 -07:00
libedit
libelf
libemos
libepoxy
libev
libevent
libevpath
libfabric
libffi
libffs
libfontenc
libfs
libgcrypt
libgd
libgeotiff	Add libgeotiff package (#8203)	2018-05-20 15:02:49 -05:00
libgit2
libgpg-error
libgpuarray
libgridxc
libgtextutils
libharu
libhio	added line 43 (#8369)	2018-06-04 15:04:45 -05:00
libice
libiconv
libint
libjpeg	Update the hash of libjpeg v9c. (#8230)	2018-05-21 15:53:55 -05:00
libjpeg-turbo	libjpeg-turbo: updated checksums and added autoreconf for older versions (#8411)	2018-06-06 16:18:03 -05:00
libksba
liblbxutil
liblockfile
libmatheval
libmaxminddb
libmesh
libmng
libmongoc
libmonitor
libnbc
libnl
libogg
liboldx
libpcap
libpciaccess
libpfm4
libpipeline	add commented test dependencies (#8407)	2018-06-07 10:33:59 -05:00
libpng
libpsl
libpthread-stubs
libquo
librom
libshm
libsigcpp	new packages: workrave and its dependencies (#7753)	2018-06-21 18:25:26 -07:00
libsigsegv
libsm
libsodium
libspatialindex
libsplash
libssh
libssh2
libsvm
libszip
libtermkey
libtiff	Add libtiff 4.0.9 (#8201)	2018-05-20 15:01:11 -05:00
libtool
libunistring
libunwind	Add libunwind-1.2.1 (#8145)	2018-05-15 13:54:23 -07:00
libuuid
libuv
libvorbis
libvterm
libwebsockets
libwindowswm
libx11
libxau
libxaw
libxaw3d
libxc
libxcb
libxcomposite
libxcursor
libxdamage
libxdmcp
libxevie
libxext
libxfixes
libxfont
libxfont2
libxfontcache
libxft
libxi
libxinerama
libxkbcommon
libxkbfile
libxkbui
libxml2	Add libxml2 2.9.8 (#8211)	2018-05-20 15:04:47 -05:00
libxmu
libxp
libxpm
libxpresent
libxprintapputil
libxprintutil
libxrandr
libxrender
libxres
libxscrnsaver
libxshmfence
libxslt
libxsmm
libxstream
libxt
libxtrap
libxtst
libxv
libxvmc
libxxf86dga
libxxf86misc
libxxf86vm
libyogrt
libzip
likwid	Add newer likwid versions 4.3.1 and 4.3.2 (#8488)	2018-06-15 10:14:00 -05:00
linkphase3
linux-headers
listres
llvm
llvm-openmp-ompt
lmdb
lmod
lndir
log4cplus
log4cxx
loki
lordec
lrslib
lrzip
lsof
ltrace
lua
lua-bitlib
lua-jit
lua-lpeg
lua-luafilesystem
lua-luaposix
lua-mpack
luit
lulesh
lumpy-sv
lwgrp
lwm2
lz4	add commented test dependencies (#8407)	2018-06-07 10:33:59 -05:00
lzma
lzo
m4	Fix m4 on OS X highsierra (#8559)	2018-06-23 20:34:04 -05:00
macsio
mad-numdiff
mafft
magics
magma
makedepend
mallocmc
man-db
manta
maq
mariadb
masa
masurca
matio
matlab
maven
maverick
mawk
mbedtls
mc
mcl
mdtest
meep
mefit
megahit	A new package: megahit. (#8471)	2018-06-14 13:45:12 -05:00
memaxes
meme
memkind	Create new package: memkind (#8242)	2018-05-22 13:37:03 -05:00
meraculous	Add branch with bugfix (#8355)	2018-06-03 22:20:57 -05:00
mercurial
mesa	New version mesa-18.1.2 (#8589)	2018-06-27 14:57:55 -05:00
mesa-glu
meshkit
meson
mesquite
metabat
metaphysicl
metasv
metis
mfem	Balay/petsc remove boost dependency (#8508)	2018-06-24 10:52:14 -05:00
microbiomeutil
minced
mindthegap
miniaero
miniamr
miniasm
miniconda2	Bump miniconda to 4.5.4. (#8435)	2018-06-10 15:15:43 -05:00
miniconda3	Bump miniconda to 4.5.4. (#8435)	2018-06-10 15:15:43 -05:00
minife
minighost
minigmg
minimap2
minimd
miniqmc
minisign
minismac2d
minitri
minixyce
minuit	Added minuit package (#8536)	2018-06-22 11:27:25 -05:00
mira
mirdeep2	Package/mirdeep/fix for new url take2 (#8247)	2018-05-23 07:25:42 -05:00
mitofates	mitofates: needs perl at runtime (#8526)	2018-06-20 11:17:14 -05:00
mitos
mkfontdir
mkfontscale
mlhka
moab
modern-wheel
molcas
mono
mosh
mothur
motif
motioncor2
mozjs
mpark-variant
mpc
mpe2
mpest
mpfr
mpibash
mpiblast
mpich
mpifileutils
mpilander	Add: MPILander (#8464)	2018-06-13 14:40:51 -05:00
mpileaks
mpip
mpir
mpix-launch-swift
mrbayes
mrnet
mrtrix3
mscgen
msgpack-c	Add msgpack-c 3.0.1 (#8264)	2018-05-24 10:47:31 -05:00
mshadow
multitail
multiverso
mummer
mumps
munge
muparser
muscle
muse
muster
mvapich2	mvapich2: added a proper libs attribute (#8253)	2018-05-23 13:28:21 -05:00
mxml
mxnet
nag
nalu	Add tags for ECP applications that are in Spack.	2018-06-21 16:07:47 -07:00
nalu-wind	Updates to Nalu package(s) (#8492)	2018-06-18 12:04:11 -05:00
namd
nano
nanoflann
nanopb
nasm	nasm: Fix compilation with GCC 8 (#8307)	2018-05-29 10:28:17 -05:00
nauty
ncbi-magicblast	New package ncbi-magicblast (#8517)	2018-06-22 17:48:32 -05:00
ncbi-rmblastn
nccl
nccmp
ncdu
ncftp
ncl
nco	nco: Find NetCDF (#8159)	2018-05-18 07:51:21 -05:00
ncurses	Add ncurses 6.1 (#8257)	2018-05-23 13:27:22 -05:00
ncview
ndiff
nek5000	Add tags for ECP applications that are in Spack.	2018-06-21 16:07:47 -07:00
nekbone
nekcem
nektar	Adding nektar++ package (#8167)	2018-06-01 09:30:06 -05:00
neovim	neovim: add info for v0.3.0 (#8472)	2018-06-14 13:44:40 -05:00
netcdf
netcdf-cxx
netcdf-cxx4	netcdf-cxx4: Update to use CPPFLAGS (#8148)	2018-05-21 16:23:35 -05:00
netcdf-fortran	netcdf-cxx4: Update to use CPPFLAGS (#8148)	2018-05-21 16:23:35 -05:00
netgauge
netgen	netgen should depend on zlib (#8473)	2018-06-14 13:43:43 -05:00
netlib-lapack	Changed netlib-lapack to fix an error in the CMake setup. (#8172)	2018-05-17 19:51:34 -05:00
netlib-scalapack
netlib-xblas
nettle
neuron
nextflow
nfft
nghttp2
nginx
ngmlr
ninja
ninja-fortran
nlohmann-json
nlopt
nmap	Added nmap version 7.70 (#8606)	2018-06-28 15:32:43 -05:00
nnvm
node-js
notmuch
npb
npm
npth
nspr
numactl	numactl: fix build with glibc-2.26 (#8615)	2018-06-29 14:41:52 -05:00
numdiff
nut
nwchem	Add tags for ECP applications that are in Spack.	2018-06-21 16:07:47 -07:00
ocaml
occa
oce	oce: add 0.18.3 (#8477)	2018-06-14 13:44:14 -05:00
oclint
oclock
octave
octave-optim
octave-splines
octave-struct
octopus
of-adios-write
omega-h	omega-h: fix -std=c++11 build error (#8543)	2018-06-23 07:25:33 -05:00
ompss
ompt-openmp
oniguruma
ont-albacore	added albacore version 2.3.1 (#8513)	2018-06-19 11:16:41 -05:00
opa-psm2
opam
opari2	Update scorep and friends to newest versions (#8171)	2018-05-17 19:52:01 -05:00
openbabel
openblas	openblas: add 0.3.0 (#8478)	2018-06-14 13:43:05 -05:00
opencoarrays
opencv	Adding patch to Opencv (3.3.0-3.4.1) for fixing conflict between CUDA and OpenCV dnn header file (#8502)	2018-06-18 09:53:48 -05:00
openexr
openfast
openfoam-com	ENH: Building OpenFOAM sub-packages (issue #8579) (#8592)	2018-07-02 10:02:48 -05:00
openfoam-org	ENH: Building OpenFOAM sub-packages (issue #8579) (#8592)	2018-07-02 10:02:48 -05:00
openfst	Add far variant to openfst package (#8299)	2018-05-28 13:45:56 -05:00
opengl
openglu
openjpeg
openmc	Add tags for ECP applications that are in Spack.	2018-06-21 16:07:47 -07:00
openmpi	openmpi: add latest release 3.0.2 (#8452)	2018-06-21 12:55:17 -05:00
opennurbs
openpmd-api	openPMD-api: update dependencies (#8528)	2018-06-20 11:24:41 -05:00
openscenegraph
openslide
openspeedshop	Add changes to the Krell packages with version updates and ranges for the latest release. (#8468)	2018-06-17 09:49:27 -05:00
openspeedshop-utils	Add changes to the Krell packages with version updates and ranges for the latest release. (#8468)	2018-06-17 09:49:27 -05:00
openssh
openssl	openssl: add new version 1.0.2o (#8486)	2018-06-15 09:54:52 +02:00
opium
opus
orfm
orthofinder
orthomcl
osu-micro-benchmarks
otf
otf2	Update scorep and friends to newest versions (#8171)	2018-05-17 19:52:01 -05:00
p4est
p7zip
pacbio-daligner
pacbio-damasker
pacbio-dazz-db
pacbio-dextractor
pagit
pagmo
paml
panda
pandaseq
pango
pangomm	new packages: workrave and its dependencies (#7753)	2018-06-21 18:25:26 -07:00
papi
papyrus
paradiseo
parallel
parallel-netcdf	Turning off parallel during make install for parallel-netcdf. (#8186)	2018-05-18 12:12:43 -05:00
paraver
paraview	paraview: set PARAVIEW_VTK_DIR in spack_env and run_env (#8308)	2018-05-30 10:35:39 -05:00
parmetis
parmgridgen
parsimonator
parsplice	Add tags for ECP applications that are in Spack.	2018-06-21 16:07:47 -07:00
partitionfinder
patch
patchelf
pathfinder
pax-utils
pbbam	pbbam: new package (#8365)	2018-06-07 22:44:30 -05:00
pbmpi
pcma
pcre	Add PCRE 8.42 (#8213)	2018-05-20 15:05:29 -05:00
pcre2	Add PCRE2 10.31 (#8214)	2018-05-20 15:05:47 -05:00
pdf2svg
pdftk	new package: pdftk (#8166)	2018-06-12 11:25:20 -07:00
pdsh
pdt	Add new versions for TAU and PDT package (#8497)	2018-06-17 17:21:00 -05:00
pegtl
pennant
percept	Percept requires googletest to be a static library. (#8506)	2018-06-18 16:34:39 -05:00
perl	views: packages can customize how they're added to views (#7152)	2018-06-26 16:14:05 -07:00
perl-algorithm-diff
perl-app-cmd
perl-array-utils
perl-b-hooks-endofscope
perl-bio-perl
perl-bit-vector
perl-cairo
perl-capture-tiny
perl-carp-clan
perl-class-data-inheritable
perl-class-inspector
perl-class-load
perl-class-load-xs
perl-compress-raw-bzip2	A new perl package: perl-io-compress. (#8566)	2018-06-25 12:02:04 -05:00
perl-compress-raw-zlib	A new perl package: perl-io-compress. (#8566)	2018-06-25 12:02:04 -05:00
perl-contextual-return
perl-cpan-meta-check
perl-data-optlist
perl-data-stag
perl-dbd-mysql
perl-dbfile
perl-dbi
perl-devel-cycle
perl-devel-globaldestruction
perl-devel-overloadinfo
perl-devel-stacktrace
perl-digest-md5
perl-dist-checkconflicts
perl-encode-locale
perl-eval-closure
perl-exception-class
perl-exporter-tiny
perl-extutils-depends
perl-extutils-makemaker
perl-extutils-pkgconfig
perl-file-copy-recursive
perl-file-listing
perl-file-pushd
perl-file-sharedir-install
perl-file-slurp-tiny
perl-file-slurper
perl-file-which
perl-font-ttf
perl-gd
perl-gd-graph
perl-gd-text
perl-graph
perl-graph-readwrite
perl-html-parser
perl-html-tagset
perl-http-cookies
perl-http-daemon
perl-http-date
perl-http-message
perl-http-negotiate
perl-inline
perl-inline-c
perl-intervaltree
perl-io-compress	A new perl package: perl-io-compress. (#8566)	2018-06-25 12:02:04 -05:00
perl-io-html
perl-io-sessiondata
perl-io-socket-ssl
perl-io-string
perl-json
perl-libwww-perl
perl-list-moreutils
perl-log-log4perl
perl-lwp
perl-lwp-mediatypes
perl-lwp-protocol-https
perl-math-cdf
perl-math-matrixreal
perl-module-build
perl-module-implementation
perl-module-runtime
perl-module-runtime-conflicts
perl-moose
perl-mozilla-ca
perl-mro-compat
perl-namespace-clean
perl-net-http
perl-net-scp-expect
perl-net-ssleay
perl-package-deprecationmanager
perl-package-stash
perl-package-stash-xs
perl-padwalker
perl-parallel-forkmanager
perl-params-util
perl-parse-recdescent
perl-pdf-api2
perl-pegex
perl-perlio-gzip
perl-perlio-utf8-strict
perl-soap-lite
perl-star-fusion
perl-statistics-descriptive
perl-statistics-pca
perl-sub-exporter
perl-sub-exporter-progressive
perl-sub-identify
perl-sub-install
perl-sub-name
perl-sub-uplevel
perl-svg
perl-swissknife
perl-task-weaken
perl-term-readkey
perl-test-cleannamespaces
perl-test-deep
perl-test-differences
perl-test-exception
perl-test-fatal
perl-test-memory-cycle
perl-test-most
perl-test-needs
perl-test-requires
perl-test-requiresinternet
perl-test-warn
perl-test-warnings
perl-text-csv
perl-text-diff
perl-text-simpletable
perl-text-soundex	perl-text-soundex: new package (#8279)	2018-05-25 14:00:12 -05:00
perl-text-unidecode
perl-time-hires
perl-time-piece
perl-try-tiny
perl-uri
perl-uri-escape
perl-version
perl-want
perl-www-robotrules
perl-xml-libxml
perl-xml-parser
perl-xml-parser-lite
perl-xml-simple
perl-yaml-libyaml
petsc	Balay/petsc remove boost dependency (#8508)	2018-06-24 10:52:14 -05:00
pexsi
pfft
pflotran
pfunit
pgdspider
pgi
phantompeakqualtools
phast	New package: phast (#7993)	2018-06-04 13:22:47 -05:00
phasta
phist	new version: Phist 1.6.0 (#8312)	2018-05-29 14:46:12 -05:00
phylip
picard	Add missing expand=False for v2.18.3 (#8342)	2018-05-31 20:24:33 -05:00
pidx
pigz	Use GitHub URL for pigz, supports > 1 release (#8339)	2018-05-31 20:28:08 -05:00
pilon
pindel
piranha
pism
pixman	Fixed linking of R with MKL + configure issue in a dep (pixman) (#8449)	2018-06-22 08:03:47 -05:00
pkg-config
pkgconf	Add pkgconf 1.4.2 (#8256)	2018-05-23 13:27:39 -05:00
planck-likelihood
plasma	xsdk: update xsdk@develop to use plasma@develop (#8555)	2018-06-24 08:08:44 -05:00
platypus	Create new package: fastgbs and its dependency platypus. (#8174)	2018-05-21 16:13:05 -05:00
plink
plplot	GDL and missing dependencies (#8283)	2018-06-08 08:35:28 -05:00
plumed	plumed: added versions 2.4.1 and 2.3.5 (#8297)	2018-05-28 08:01:51 -05:00
pmgr-collective
pmix
pnfft	Added gsl dependency to pnfft (#8255)	2018-05-24 16:24:47 -05:00
pngwriter
pnmpi
poamsa
pocl
polymake
poppler	poppler needs it test repo URL updated (#8519)	2018-06-20 16:04:22 -05:00
poppler-data	Add missing dependencies to poppler package (#8220)	2018-05-21 15:58:51 -05:00
porta
portage
postgresql
ppl
prank
presentproto
preseq
price
primer3
prinseq-lite
printproto
prng	Add new package: prng (#8396)	2018-06-06 12:07:16 -05:00
probconsrna
prodigal
proj	Add PROJ 5.0.1 (#8233)	2018-05-23 13:29:08 -05:00
protobuf
proxymngr
pruners-ninja
ps-lite
psi4
pslib	GDL and missing dependencies (#8283)	2018-06-08 08:35:28 -05:00
psm
psmc
pstreams
pugixml
pumi	pumi: add fortran variant (#8584)	2018-06-27 10:03:46 -05:00
pv	pv: initial commit (#8147)	2018-05-17 15:40:54 -05:00
pvm
py-3to2
py-4suite-xml
py-abipy
py-adios
py-affine
py-alabaster
py-apache-libcloud
py-apipkg
py-appdirs
py-appnope
py-apscheduler
py-argcomplete
py-argparse
py-ase
py-asn1crypto
py-astroid
py-astropy
py-attrs	Add dependencies for py-dask (#8120)	2018-05-16 22:54:33 -05:00
py-autopep8
py-avro	added avro and avro_json_serializer python packages (#8351)	2018-06-01 15:06:27 -05:00
py-avro-json-serializer	added avro and avro_json_serializer python packages (#8351)	2018-06-01 15:06:27 -05:00
py-babel
py-backports-abc
py-backports-functools-lru-cache
py-backports-shutil-get-terminal-size	views: packages can customize how they're added to views (#7152)	2018-06-26 16:14:05 -07:00
py-backports-ssl-match-hostname	views: packages can customize how they're added to views (#7152)	2018-06-26 16:14:05 -07:00
py-basemap
py-bcbio-gff
py-beautifulsoup4
py-binwalk
py-biom-format
py-biopython
py-bitarray
py-bitstring
py-bleach
py-blessings
py-bokeh
py-boltons
py-bottleneck
py-breakseq2
py-brian
py-brian2	add commented test dependencies (#8407)	2018-06-07 10:33:59 -05:00
py-bsddb3
py-bx-python
py-cartopy	add package py-cartopy and dependencies (#8406)	2018-06-07 08:10:39 -05:00
py-cclib
py-cdat-lite
py-cdo
py-certifi
py-cffi	added py-cffi 1.11.5 (#8349)	2018-06-01 13:13:33 -05:00
py-chardet
py-checkm-genome
py-cheetah	new packages: workrave and its dependencies (#7753)	2018-06-21 18:25:26 -07:00
py-click
py-cligj
py-cloudpickle	Add dependencies for py-dask (#8120)	2018-05-16 22:54:33 -05:00
py-cnvkit
py-cogent
py-colorama
py-colormath
py-configparser
py-counter
py-coverage
py-cpuinfo
py-crispresso
py-crossmap
py-cryptography
py-csvkit
py-current
py-cutadapt
py-cvxopt
py-cycler
py-cython	py-cython: added version 0.28.3 (#8379)	2018-06-05 13:36:29 -05:00
py-dask	Add dependencies for py-dask (#8120)	2018-05-16 22:54:33 -05:00
py-dateutil
py-dbf
py-decorator
py-deeptools
py-dendropy
py-dev
py-dill
py-discover
py-dlcpar
py-docopt	Add py-docopt package (#8236)	2018-05-22 10:49:12 -05:00
py-docutils
py-doxypy
py-doxypypy
py-dryscrape
py-dxchange
py-dxfile
py-easybuild-easyblocks
py-easybuild-easyconfigs
py-easybuild-framework
py-edffile
py-editdistance
py-elasticsearch
py-elephant	add commented test dependencies (#8407)	2018-06-07 10:33:59 -05:00
py-emcee
py-entrypoints
py-enum34
py-epydoc
py-espresso
py-espressopp
py-et-xmlfile
py-eventlet
py-execnet
py-fastaindex
py-fasteners
py-faststructure
py-fiscalyear	add commented test dependencies (#8407)	2018-06-07 10:33:59 -05:00
py-flake8	add commented test dependencies (#8407)	2018-06-07 10:33:59 -05:00
py-flask
py-flask-compress
py-flask-socketio
py-flexx
py-fparser
py-funcsigs
py-functools32
py-future
py-futures
py-gdbgui
py-genders
py-genshi
py-gevent
py-git2
py-git-review
py-gnuplot
py-goatools
py-gpaw
py-greenlet
py-griddataformats
py-guidata
py-guiqwt
py-h5py
py-html2text
py-html5lib
py-htseq
py-httpbin
py-hypothesis
py-idna
py-igraph
py-illumina-utils
py-imageio	Add py-imageio for python3 (#8553)	2018-06-26 12:55:10 -05:00
py-imagesize
py-iminuit
py-importlib
py-ipaddress
py-ipdb
py-ipykernel
py-ipython
py-ipython-genutils
py-ipywidgets
py-isort
py-itsdangerous
py-jdcal
py-jedi
py-jinja2
py-joblib
py-jpype
py-jsonschema
py-junit-xml
py-jupyter-client
py-jupyter-console
py-jupyter-core
py-jupyter-notebook
py-keras
py-kiwisolver
py-latexcodec
py-lazy
py-lazy-object-proxy
py-lazyarray
py-libconf
py-libensemble	Update py-libensemble package (#8617)	2018-06-29 14:51:30 -05:00
py-line-profiler
py-linecache2
py-lit
py-llvmlite
py-lmfit
py-localcider
py-locket	Add dependencies for py-dask (#8120)	2018-05-16 22:54:33 -05:00
py-lockfile
py-logilab-common
py-lrudict
py-lxml
py-lzstring
py-macholib
py-machotools
py-macs2
py-maestrowf
py-mako	add commented test dependencies (#8407)	2018-06-07 10:33:59 -05:00
py-mappy
py-markdown
py-markupsafe
py-matplotlib	add commented test dependencies (#8407)	2018-06-07 10:33:59 -05:00
py-mccabe	add commented test dependencies (#8407)	2018-06-07 10:33:59 -05:00
py-mdanalysis
py-meep
py-memory-profiler
py-methylcode
py-mg-rast-tools
py-misopy
py-mistune
py-mock
py-moltemplate
py-mongo
py-monotonic
py-monty
py-more-itertools
py-mpi4py
py-mpmath	py-mpmath: added version 1.0.0 (#8382)	2018-06-06 07:59:53 -05:00
py-multiprocess
py-multiqc
py-mx
py-mxnet
py-myhdl
py-mysqldb1
py-natsort
py-nbconvert
py-nbformat
py-neo
py-nestle
py-netcdf4
py-netifaces
py-networkx
py-nose
py-nosexcover
py-numba
py-numexpr
py-numexpr3
py-numpy	numpy: nosetest (#8404)	2018-06-06 10:33:31 -05:00
py-numpydoc
py-olefile
py-ont-fast5-api
py-openpmd-validator
py-openpyxl
py-openslide-python
py-ordereddict
py-oset
py-owslib	add package py-cartopy and dependencies (#8406)	2018-06-07 08:10:39 -05:00
py-packaging
py-palettable
py-pandas
py-paramiko
py-partd	Add dependencies for py-dask (#8120)	2018-05-16 22:54:33 -05:00
py-pathlib2
py-pathos
py-pathspec
py-patsy	add commented test dependencies (#8407)	2018-06-07 10:33:59 -05:00
py-pbr
py-perf
py-performance
py-periodictable
py-petsc4py
py-pexpect
py-phonopy
py-pickleshare
py-pil
py-pillow	Updating py-pillow with change in checksum for version 5.1.0. (#8547)	2018-06-22 18:02:27 -05:00
py-pip	Added py-pip 10.0.1 and py-setuptools 39.2.0 (#8377)	2018-06-05 13:36:09 -05:00
py-pipits
py-pkgconfig	add commented test dependencies (#8407)	2018-06-07 10:33:59 -05:00
py-plotly
py-pluggy	Add dependencies for py-dask (#8120)	2018-05-16 22:54:33 -05:00
py-ply
py-pmw
py-poster
py-pox
py-ppft
py-prettytable
py-proj
py-projectq	py-projectq: Added new package and fixed its dependency py-pybind11 (#8378)	2018-06-09 16:22:25 -05:00
py-prompt-toolkit
py-protobuf
py-psutil	modified: var/spack/repos/builtin/packages/py-psutil/package.py (#8420)	2018-06-07 10:26:48 -05:00
py-psyclone	add commented test dependencies (#8407)	2018-06-07 10:33:59 -05:00
py-ptyprocess
py-pudb
py-py	Add dependencies for py-dask (#8120)	2018-05-16 22:54:33 -05:00
py-py2bit
py-py2cairo	add commented test dependencies (#8407)	2018-06-07 10:33:59 -05:00
py-py2neo
py-py4j
py-pyani
py-pyasn1
py-pybedtools
py-pybigwig
py-pybind11	py-projectq: Added new package and fixed its dependency py-pybind11 (#8378)	2018-06-09 16:22:25 -05:00
py-pybtex
py-pybtex-docutils
py-pychecker
py-pycodestyle
py-pycparser
py-pycrypto
py-pycurl
py-pydatalog
py-pydispatcher
py-pydot
py-pyelftools
py-pyepsg	add package py-cartopy and dependencies (#8406)	2018-06-07 08:10:39 -05:00
py-pyfaidx
py-pyfasta
py-pyfftw
py-pyflakes
py-pygdbmi
py-pygments
py-pygobject
py-pygpu
py-pygtk
py-pylint
py-pymatgen
py-pyminifier
py-pymol
py-pympler
py-pynn	add commented test dependencies (#8407)	2018-06-07 10:33:59 -05:00
py-pypar
py-pyparsing
py-pypeflow
py-pyprof2html
py-pyqt
py-pyrad
py-pysam
py-pyscaf
py-pyserial
py-pyshp	add package py-cartopy and dependencies (#8406)	2018-06-07 08:10:39 -05:00
py-pyside
py-pysocks
py-pysqlite
py-pytables
py-pytest	Add dependencies for py-dask (#8120)	2018-05-16 22:54:33 -05:00
py-pytest-cov
py-pytest-flake8
py-pytest-httpbin
py-pytest-mock
py-pytest-runner
py-pytest-xdist
py-python-daemon
py-python-engineio
py-python-gitlab
py-python-levenshtein
py-python-socketio
py-pythonqwt
py-pytz
py-pyutilib
py-pyvcf
py-pywavelets
py-pyyaml
py-qtawesome
py-qtconsole	add commented test dependencies (#8407)	2018-06-07 10:33:59 -05:00
py-qtpy
py-quantities
py-quast
py-radical-utils
py-ranger
py-rasterio
py-readme-renderer
py-regex
py-reportlab
py-requests	add commented test dependencies (#8407)	2018-06-07 10:33:59 -05:00
py-requests-toolbelt
py-restview
py-rope
py-rpy2
py-rsa
py-rseqc
py-rtree
py-saga-python
py-scandir
py-scientificpython
py-scikit-image
py-scikit-learn	py-scikit-learn: added version 0.19.1 and updated dependencies (#8399)	2018-06-06 07:41:48 -05:00
py-scipy	py-scikit-learn: added version 0.19.1 and updated dependencies (#8399)	2018-06-06 07:41:48 -05:00
py-seaborn
py-setuptools	Added py-pip 10.0.1 and py-setuptools 39.2.0 (#8377)	2018-06-05 13:36:09 -05:00
py-setuptools-git
py-setuptools-scm
py-sfepy
py-sh
py-shapely	add package py-cartopy and dependencies (#8406)	2018-06-07 08:10:39 -05:00
py-shiboken
py-simplegeneric
py-simplejson
py-singledispatch
py-sip
py-six
py-slepc4py
py-slurm-pipeline
py-sncosmo
py-snowballstemmer
py-snuggs
py-spectra
py-spefile
py-spglib
py-sphinx	add commented test dependencies (#8407)	2018-06-07 10:33:59 -05:00
py-sphinx-bootstrap-theme
py-sphinx-rtd-theme
py-sphinxcontrib-bibtex
py-sphinxcontrib-programoutput
py-sphinxcontrib-websupport	add commented test dependencies (#8407)	2018-06-07 10:33:59 -05:00
py-spyder
py-spykeutils
py-sqlalchemy
py-statsmodels
py-stevedore
py-storm
py-subprocess32
py-symengine
py-symfit
py-sympy	py-sympy: added version 1.1.1 (#8381)	2018-06-05 13:42:18 -05:00
py-tabulate
py-tappy
py-terminado
py-testinfra	py-testinfra: Add versions 1.12.0 and 1.13.0 (#8222)	2018-05-21 15:57:25 -05:00
py-tetoolkit
py-theano	add commented test dependencies (#8407)	2018-06-07 10:33:59 -05:00
py-tifffile
py-toml
py-tomopy
py-toolz	Add dependencies for py-dask (#8120)	2018-05-16 22:54:33 -05:00
py-tornado
py-tqdm
py-traceback2
py-traitlets
py-tuiview
py-twisted
py-typing
py-tzlocal
py-udunits
py-umi-tools
py-unittest2
py-unittest2py3k
py-urllib3
py-urwid
py-vcversioner
py-virtualenv	py-virtualenv: added version 16.0.0 (#8380)	2018-06-05 13:35:43 -05:00
py-virtualenv-clone
py-virtualenvwrapper
py-vmd-python
py-vsc-base
py-vsc-install
py-wcsaxes
py-wcwidth
py-webkit-server
py-weblogo
py-werkzeug
py-wheel
py-widgetsnbextension
py-wrapt
py-xarray
py-xattr
py-xlrd
py-xlsxwriter
py-xmlrunner
py-xopen
py-xpyb
py-xvfbwrapper
py-yamlreader
py-yapf
py-yt
py-zmq
py-zope-event	Add dependencies for py-dask (#8120)	2018-05-16 22:54:33 -05:00
py-zope-interface	Add dependencies for py-dask (#8120)	2018-05-16 22:54:33 -05:00
python	Add Python 3.7.0 (#8619)	2018-06-29 16:25:39 -05:00
qbank
qbox
qhull
qmcpack	Add tags for ECP applications that are in Spack.	2018-06-21 16:07:47 -07:00
qmd-progress	latte: version bump (#8611)	2018-06-29 09:19:24 -05:00
qrupdate
qt	fix qt@5.8: build on systems without wayland (#8417)	2018-06-07 10:50:05 -05:00
qt-creator
qtgraph	Add urls into cbtf* and openspeedshop* package files and update the release versions for the Krell products (#8188)	2018-05-21 16:03:31 -05:00
qthreads
quantum-espresso	Fixed compilation of quantum-espresso (#8439)	2018-06-11 11:42:13 -05:00
quinoa
qwt
r	Fixed linking of R with MKL + configure issue in a dep (pixman) (#8449)	2018-06-22 08:03:47 -05:00
r-a4
r-a4base
r-a4classif
r-a4core
r-a4preproc
r-a4reporting
r-abadata
r-abaenrichment
r-abind
r-absseq
r-acde
r-acepack
r-acgh
r-acme
r-ada
r-adabag
r-ade4
r-adegenet
r-adsplit
r-aer	r-aer: a new package. (#8567)	2018-06-28 15:40:00 -05:00
r-affxparser
r-affy
r-affycomp
r-affycompatible
r-affycontam
r-affycoretools
r-affydata
r-affyexpress
r-affyilm
r-affyio
r-affypdnn
r-affyplm
r-affyqcreport
r-affyrnadegradation
r-agdex
r-agilp
r-agimicrorna
r-aims
r-aldex2
r-allelicimbalance
r-alpine
r-als
r-alsace
r-altcdfenvs
r-ampliqueso
r-analysispageserver
r-anaquin
r-aneufinder
r-aneufinderdata
r-annaffy
r-annotate
r-annotationdbi
r-annotationfilter
r-annotationforge
r-annotationhub
r-ape
r-assertthat
r-backports
r-bamsignals
r-base64
r-base64enc
r-bbmisc
r-beanplot
r-bh
r-bindr
r-bindrcpp
r-biobase
r-biocgenerics
r-biocinstaller
r-biocparallel
r-biocstyle
r-biom-utils
r-biomart
r-biomformat
r-biostrings
r-biovizbase
r-bit
r-bit64
r-bitops
r-blob
r-bookdown
r-boot
r-brew
r-broom
r-bsgenome
r-bumphunter
r-c50
r-callr
r-car
r-caret
r-category
r-catools
r-cdcfluview
r-cellranger
r-cghflasso	r-cghflasso v0 2 1 - new package (#8177)	2018-05-21 16:12:35 -05:00
r-checkmate
r-checkpoint
r-chemometrics
r-chron
r-circlize
r-class
r-classint
r-cli
r-clipr
r-cluster
r-clusterprofiler
r-cner
r-coda
r-codetools
r-coin
r-colorspace
r-complexheatmap
r-corpcor
r-corrplot
r-covr
r-cowplot
r-crayon
r-crosstalk
r-cubature
r-cubist
r-curl
r-data-table
r-dbi
r-dbplyr
r-delayedarray
r-deldir
r-dendextend
r-deoptim
r-deoptimr
r-deseq
r-deseq2
r-desolve
r-devtools
r-diagrammer
r-dicekriging
r-dichromat
r-diffusionmap
r-digest
r-diptest
r-dirichletmultinomial
r-dismo	R dismo 1 1 4 - new package (#8176)	2018-05-17 19:50:19 -05:00
r-dnacopy
r-do-db
r-domc
r-doparallel
r-dorng
r-dose
r-downloader
r-dplyr
r-dt
r-dtw
r-dygraphs
r-e1071
r-edger
r-ellipse
r-ensembldb
r-ergm
r-evaluate
r-expm
r-factoextra
r-factominer
r-fastmatch
r-ff
r-fftwtools
r-fgsea
r-filehash
r-fit-models
r-flashclust
r-flexclust
r-flexmix
r-fnn
r-forcats
r-foreach
r-forecast
r-foreign
r-formatr
r-formula
r-fpc
r-fracdiff
r-futile-logger
r-futile-options	Add list_url to allow download of prior versions from cran archive (#8141)	2018-05-15 22:10:20 -05:00
r-gbm
r-gcrma
r-gdata
r-gdsfmt
r-geiger
r-genefilter
r-geneplotter
r-genie3
r-genomeinfodb
r-genomeinfodbdata
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-geomorph
r-geoquery
r-geosphere
r-getopt
r-getoptlong
r-ggally
r-ggbio
r-ggdendro
r-ggjoy
r-ggmap
r-ggplot2
r-ggpubr
r-ggrepel
r-ggridges
r-ggsci
r-ggvis
r-gistr
r-git2r
r-glmnet
r-globaloptions
r-glue
r-gmodels
r-gmp
r-go-db
r-googlevis
r-gosemsim
r-gostats
r-gplots
r-graph
r-gridbase
r-gridextra
r-gseabase
r-gss
r-gsubfn
r-gtable
r-gtools
r-gtrellis
r-gviz
r-haven
r-hexbin
r-highr
r-hmisc
r-hms
r-htmltable
r-htmltools
r-htmlwidgets
r-httpuv
r-httr
r-hwriter
r-hypergraph
r-ica
r-igraph
r-illuminaio
r-impute
r-influencer
r-inline
r-interactivedisplaybase
r-ipred
r-iranges
r-irdisplay
r-irkernel
r-irlba
r-iso
r-iterators
r-janitor
r-jaspar2018
r-jomo	r-mitml: new package and its dependencies r-jomo and r-pan (#8412)	2018-06-06 17:44:32 -05:00
r-jpeg
r-jsonlite
r-kegg-db
r-kegggraph
r-keggrest
r-kernlab
r-kernsmooth
r-kknn
r-knitr
r-labeling
r-lambda-r	Add list_url to allow download of prior versions from cran archive (#8141)	2018-05-15 22:10:20 -05:00
r-laplacesdemon
r-lars
r-lattice
r-latticeextra
r-lava
r-lazyeval
r-leaflet
r-leaps
r-learnbayes
r-lhs
r-limma
r-lme4
r-lmtest
r-locfit
r-log4r
r-lpsolve
r-lsei
r-lubridate
r-magic
r-magrittr
r-makecdfenv
r-maldiquant
r-mapproj
r-maps
r-maptools
r-markdown
r-mass
r-matr
r-matrix
r-matrixmodels
r-matrixstats
r-mclust
r-mcmcglmm
r-mco
r-mda
r-memoise
r-mergemaid
r-methodss3
r-mgcv
r-mgraster
r-mice	r-mice: new package (#8423)	2018-06-08 14:48:54 -05:00
r-mime
r-minfi
r-minqa
r-misc3d
r-mitml	r-mitml: new package and its dependencies r-jomo and r-pan (#8412)	2018-06-06 17:44:32 -05:00
r-mixtools
r-mlbench
r-mlinterfaces
r-mlr
r-mlrmbo
r-mmwrweek
r-mnormt
r-modelmetrics
r-modelr
r-modeltools
r-mpm
r-msnbase
r-multcomp
r-multtest
r-munsell
r-mvtnorm
r-mzid
r-mzr
r-nanotime
r-ncbit
r-ncdf4
r-network
r-networkd3
r-nlme
r-nloptr
r-nmf
r-nnet
r-nnls
r-nor1mix
r-np
r-numderiv
r-oligoclasses
r-oo
r-openssl
r-org-hs-eg-db
r-organismdbi
r-packrat
r-pacman
r-pamr
r-pan	r-mitml: new package and its dependencies r-jomo and r-pan (#8412)	2018-06-06 17:44:32 -05:00
r-parallelmap
r-paramhelpers
r-party
r-partykit
r-pathview
r-pbapply
r-pbdzmq
r-pbkrtest
r-pcamethods
r-pcapp
r-permute
r-pfam-db
r-phangorn
r-phantompeakqualtools
r-phyloseq
r-picante
r-pkgconfig
r-pkgmaker
r-plogr
r-plot3d
r-plotly
r-plotrix
r-pls
r-plyr
r-pmcmr
r-png
r-powerlaw
r-prabclus
r-praise
r-preprocesscore
r-prettyunits
r-proc	r-proc v1 12 1 - New package (#8191)	2018-05-19 11:26:44 -05:00
r-prodlim
r-progress
r-protgenerics
r-proto
r-proxy
r-pryr
r-psych
r-ptw
r-purrr
r-quadprog
r-quantmod
r-quantreg
r-quantro
r-qvalue
r-r6
r-randomforest
r-ranger
r-rappdirs
r-raster
r-rbgl
r-rbokeh
r-rcolorbrewer
r-rcpp
r-rcpparmadillo
r-rcppblaze
r-rcppcctz
r-rcppcnpy	r-rcppcnpy: a new package. (#8139)	2018-05-16 12:45:24 -05:00
r-rcppeigen	r-rstan: new version and dependents (#8158)	2018-05-17 15:26:38 -05:00
r-rcppprogress
r-rcurl
r-rda
r-readr
r-readxl
r-registry
r-rematch
r-reordercluster
r-reportingtools
r-repr
r-reprex
r-reshape
r-reshape2
r-rex
r-rgdal
r-rgenoud
r-rgeos
r-rgl
r-rgooglemaps
r-rgraphviz
r-rhdf5
r-rhtslib
r-rinside
r-rjags
r-rjava
r-rjson
r-rjsonio
r-rlang
r-rmarkdown
r-rminer
r-rmpfr
r-rmpi
r-rmysql
r-rngtools
r-robustbase
r-rocr
r-rodbc
r-roxygen2
r-rpart
r-rpart-plot
r-rpostgresql
r-rprojroot
r-rsamtools
r-rsnns
r-rsolnp
r-rsqlite
r-rstan	r-rstan: new version and dependents (#8158)	2018-05-17 15:26:38 -05:00
r-rstudioapi
r-rtracklayer
r-rtsne
r-rvcheck
r-rvest
r-rzmq
r-s4vectors
r-samr
r-sandwich
r-scales
r-scatterplot3d
r-sdmtools
r-segmented
r-selectr
r-seqinr
r-seqlogo
r-seurat
r-sf
r-sfsmisc
r-shape
r-shiny
r-shinydashboard
r-shortread
r-siggenes
r-simpleaffy
r-smoof
r-sn
r-snow
r-snowfall
r-snprelate
r-som
r-somaticsignatures
r-sourcetools
r-sp
r-sparsem
r-spatial	r-spatial v7.3.11 - New package (#8204)	2018-05-19 13:12:47 -05:00
r-spdep
r-speedglm
r-spem
r-splitstackshape	r-splitstackshape: Create new package. (#8370)	2018-06-06 08:03:23 -05:00
r-sqldf
r-squash
r-stanheaders	r-rstan: new version and dependents (#8158)	2018-05-17 15:26:38 -05:00
r-statmod
r-statnet-common
r-stringi
r-stringr
r-strucchange
r-subplex
r-summarizedexperiment
r-survey
r-survival
r-sva
r-tarifx
r-tclust
r-tensora
r-testit
r-testthat
r-tfbstools
r-tfmpvalue
r-th-data
r-threejs
r-tibble
r-tidycensus
r-tidyr
r-tidyselect
r-tidyverse
r-tiff
r-tigris
r-timedate
r-tmixclust
r-topgo
r-trimcluster
r-truncnorm
r-trust
r-tseries
r-tsne
r-ttr
r-udunits2
r-units
r-utf8	r-utf8 v1.1.3 - New package (#8206)	2018-05-19 16:23:03 -05:00
r-utils
r-uuid
r-variantannotation
r-varselrf
r-vcd
r-vegan
r-vgam
r-vipor
r-viridis
r-viridislite
r-visnetwork
r-vsn
r-whisker
r-withr
r-xde
r-xgboost
r-xlconnect
r-xlconnectjars
r-xlsx
r-xlsxjars
r-xmapbridge
r-xml
r-xml2
r-xtable
r-xts
r-xvector
r-yaml
r-yapsa
r-yaqcaffy
r-yarn
r-zlibbioc
r-zoo
racon
raft
ragel
raja
randfold
random123
randrproto
rapidjson
ravel
raxml
ray
rdma-core
rdp-classifier
re2c
readfq
readline
recordproto
redundans
relion
rempi	added ReMPI version 1.1.0 (#8548)	2018-06-22 17:03:41 -05:00
rename
rendercheck
renderproto
repeatmasker	repeatmasker: fix bin location and dependency (#8286)	2018-05-25 18:22:25 -05:00
resourceproto
revbayes
rgb
rhash
rlwrap
rmlab
rna-seqc
rngstreams	Add new package: rngstreams (#8395)	2018-06-06 12:10:56 -05:00
rockstar
root
rose
rr	add commented test dependencies (#8407)	2018-06-07 10:33:59 -05:00
rsbench
rsem
rstart
rsync
rtags
rtax
ruby
ruby-gnuplot
ruby-narray
ruby-ronn
ruby-rubyinline
ruby-svn2git
ruby-terminal-table
rust
rust-bindgen
sabre
sailfish
salmon
sambamba
samblaster
samrai	samrai: update package for 3.12.0 and fix compilation bugs for earlier versions (#8501)	2018-06-18 13:52:24 -05:00
samtools
sandbox
sas
satsuma2
savanna
saws
sbt	Provide new version of sbt (simple build tool) (#8576)	2018-06-27 10:43:24 -07:00
scala
scalasca
scalpel
scan-for-matches
scons
scorec-core
scorep	Update scorep and friends to newest versions (#8171)	2018-05-17 19:52:01 -05:00
scotch	new version scotch@6.0.5a (#8254)	2018-06-08 08:39:03 -05:00
scr
screen
scripts
scrnsaverproto
sctk
sdl2
sdl2-image
sed
seqan
seqprep
seqtk
serf
sessreg
setxkbmap
sga
shapeit
shared-mime-info
shiny-server
shocklibs
shoremap
shortbred
shortstack
showfont
sickle
siesta
signalp
signify
silo	silo: Make silo use AutotoolsPackage (#8551)	2018-06-22 17:19:03 -05:00
simplemoc
simul
simulationio
singularity
sleef	sleef: a new library. (#8198)	2018-05-19 11:26:31 -05:00
slepc	slepc: add 3.9.1 (#8480)	2018-06-14 13:41:52 -05:00
slurm
smalt
smproxy
snakemake
snap
snap-berkeley
snap-korf
snappy
snbone
sniffles
snpeff
snphylo
snptest
soap2
soapdenovo2
soapdenovo-trans
soapindel
soapsnp
sofa-c
somatic-sniper
sortmerna
sosflow
sowing	sowing: update to version used by current petsc -i.e 1.1.25-p1 (#8561)	2018-06-24 17:02:39 -05:00
sox
spades
spark
sparsehash
sparta
spdlog
spectrum-mpi
speex
spglib
sph2pipe
spherepack
spindle
spot
sqlite	add sqlitebrowser (#8418)	2018-06-07 11:34:29 -05:00
sqlitebrowser	add sqlitebrowser (#8418)	2018-06-07 11:34:29 -05:00
squid
sra-toolkit
sspace-longread
sspace-standard
sst-dumpi
sst-macro
stacks
staden-io-lib
star
star-ccm-plus
startup-notification
stat
stc
stow
strace
stream
strelka
stress
stringtie
structure
sublime-text
subread	subread: use compiler wrappers when compiling (#8328)	2018-06-01 10:30:47 +02:00
subversion
suite-sparse	Use the name of the Fortran compiler to determine what name mangling (#8393)	2018-06-14 20:45:21 -07:00
sumaclust
sundials
superlu
superlu-dist	superlu_dist: 'master' is branch - not tag (#8495)	2018-06-16 08:18:01 -05:00
superlu-mt
supernova
sw4lite
swap-assembler	swap-assembler: Create new package. (#8144)	2018-05-17 15:43:30 -05:00
swarm
swfft
swiftsim
swig
symengine
sympol
sz	remove pwrType from the interface SZ_compress_args() (#8414)	2018-06-06 17:44:47 -05:00
tabix
talloc
tantan
tar
targetp
task	task: Add version 2.5.1 (#8184)	2018-05-18 10:28:19 -05:00
taskd
tasmanian
tassel
tau	Add new versions for TAU and PDT package (#8497)	2018-06-17 17:21:00 -05:00
tcl	tcl package: Install sources (#8153)	2018-06-08 11:10:40 -07:00
tcl-itcl	Add package tcl-itcl (#8578)	2018-06-27 10:05:00 -05:00
tcl-tcllib
tcl-tclxml
tclap
tcoffee
tcptrace
tcsh
tealeaf
tetgen
tethex
texinfo
texlive
the-platinum-searcher
the-silver-searcher
thrift
thrust
tig
tinyxml
tinyxml2
tioga
tk
tmalign
tmhmm
tmux
tmuxinator
tophat	Add Tophat v2.1.2, fixes automake issues (#8266)	2018-05-24 20:04:03 -05:00
tppred
transabyss
transdecoder
transposome
transset
trapproto
tree
trf	trf: make executable (#8265)	2018-05-24 10:47:17 -05:00
triangle
trilinos	Trilinos needs parallel-netcdf as an explicit dependency to avoid concretization errors when netcdf is an external. (#8493)	2018-06-16 14:11:07 -05:00
trimgalore	trimgalore: Use perl from env (#8318)	2018-05-30 12:31:05 -05:00
trimmomatic
trinity	trinity: add perl+threads dependency (#8143)	2018-05-18 07:47:33 -05:00
trnascan-se
turbine
turbomole
tut
twm
tycho2
typhon	Update BookLeaf_Cpp and Typhon packages. (#8249)	2018-05-23 07:28:15 -05:00
typhonio
uberftp
ucx
udunits2
ufo-core
ufo-filters
umpire	Add umpire package (#8229)	2018-05-29 14:41:09 -05:00
unblur
uncrustify
unibilium
unison
units
unixodbc
unuran	Add new package: unuran (#8397)	2018-06-11 08:41:32 -05:00
unzip
usearch
util-linux
util-macros
uuid
valgrind	use new valgrind repo (#8538)	2018-06-21 16:35:07 -05:00
vampirtrace
vardictjava
varscan
vc
vcftools
vcsh
vdt
vecgeom
veclibfort
vegas2
velvet
verilator	Add version 3.904 of verilator (#8577)	2018-06-26 17:51:45 -05:00
videoproto
viennarna
viewres
vim	Added vim 8.1 (#8185)	2018-05-18 12:07:05 -05:00
virtualgl
visit
vizglow
vmatch
voropp
votca-csg
votca-ctp
votca-tools
votca-xtp
vpfft
vpic
vsearch
vt
vtk
vtkh
vtkm
wannier90
wcslib
wget	add commented test dependencies (#8407)	2018-06-07 10:33:59 -05:00
wgsim
windowswmproto
wireshark
workrave	new packages: workrave and its dependencies (#7753)	2018-06-21 18:25:26 -07:00
wt
wx
wxpropgrid
x11perf
xapian-core
xauth
xbacklight
xbiff
xbitmaps
xbraid
xcalc
xcb-demo
xcb-proto
xcb-util
xcb-util-cursor
xcb-util-errors
xcb-util-image
xcb-util-keysyms
xcb-util-renderutil
xcb-util-wm
xcb-util-xrm
xclip
xclipboard
xclock
xcmiscproto
xcmsdb
xcompmgr
xconsole
xcursor-themes
xcursorgen
xdbedizzy
xditview
xdm
xdpyinfo
xdriinfo
xedit
xerces-c	Add Xerces-C++ 3.2.1 (#8208)	2018-05-20 15:04:06 -05:00
xev
xextproto
xeyes
xf86bigfontproto
xf86dga
xf86dgaproto
xf86driproto
xf86miscproto
xf86rushproto
xf86vidmodeproto
xfd
xfindproxy
xfontsel
xfs
xfsinfo
xfwp
xgamma
xgc
xhmm	A new package: xhmm. (#8620)	2018-07-02 07:54:41 -05:00
xhost
xineramaproto
xinit
xinput
xios
xkbcomp
xkbdata
xkbevd
xkbprint
xkbutils
xkeyboard-config
xkill
xload
xlogo
xlsatoms
xlsclients
xlsfonts
xmag
xman
xmessage
xmh
xmlf90
xmlto
xmodmap
xmore
xorg-cf-files
xorg-docs
xorg-gtest
xorg-server
xorg-sgml-doctools
xphelloworld
xplor-nih
xplsprinters
xpr
xprehashprinterlist
xprop
xproto
xproxymanagementprotocol
xqilla
xrandr
xrdb
xrefresh
xrootd
xrx
xsbench
xscope
xsdk	Balay/petsc remove boost dependency (#8508)	2018-06-24 10:52:14 -05:00
xsdktrilinos
xset
xsetmode
xsetpointer
xsetroot
xsimd	xsimd: test type (#8405)	2018-06-06 12:10:34 -05:00
xsm
xstdcmap
xtensor
xtensor-python
xterm
xtl
xtrans
xtrap
xts
xvidtune
xvinfo
xwd
xwininfo
xwud
xxhash	New package xxhash. (#8530)	2018-06-20 13:51:53 -05:00
xz	Add xz 5.2.4 (#8202)	2018-05-20 15:01:33 -05:00
yajl
yambo	yambo: added versions 4.2.2 (#8298)	2018-05-28 08:01:29 -05:00
yaml-cpp
yasm
yorick
z3
zeromq	Bump ZeroMQ from v4.2.2 to v4.2.5 (#8514)	2018-06-20 16:33:17 +02:00
zfp
zip
zlib
zoltan	zoltan: depends on metis.h and libmetis (#8583)	2018-06-26 23:29:22 -07:00
zsh
zstd