..
abinit
Add Abinit 8.6.3 ( #6959 )
2018-01-20 10:20:00 -06:00
abyss
abyss: added missing libtool dependency ( #7054 )
2018-01-31 14:01:49 +01:00
ack
Version update for 2.22 ( #7023 )
2018-01-22 07:12:00 +01:00
activeharmony
adept-utils
adios
adios2
Cleanup: Remove Dbl Brackets ( #6848 )
2018-01-08 19:42:51 +01:00
adlbx
adol-c
albert
alglib
allinea-forge
allinea-reports
allpaths-lg
alquimia
alsa-lib
amg
amg2013
amp
ampliconnoise
amr-exp-parabolic
amrex
andi
angsd
angsd: new version, and conflict for newer htslib with old version ( #7122 )
2018-02-05 18:33:12 +01:00
ant
antlr
ape
apex
applewmproto
appres
apr
apr-util
archer
argp-standalone
argp-standalone@1.3: new package ( #7014 )
2018-01-23 22:49:17 +01:00
argtable
arlecore
armadillo
arpack-ng
Changed keyword argument 'recurse' to 'recursive'
2018-02-13 02:18:28 -08:00
ascent
updates to conduit and ascent packages ( #7040 )
2018-02-12 10:20:46 -08:00
asciidoc
aspa
aspell
aspell6-de
aspell6-en
aspell6-es
assimp
astra
astral
astyle
changed url for astyle ( #6863 )
2018-01-09 09:40:27 -06:00
atk
atlas
Changed keyword argument 'recurse' to 'recursive'
2018-02-13 02:18:28 -08:00
atom-dft
atompaw
atop
augustus
autoconf
Do not construct path to perl command manually ( #6927 )
2018-01-13 22:10:42 -06:00
autodock-vina
autogen
automaded
automake
bamtools
bamutil
barrnap
barrnap: Create new package ( #6855 )
2018-01-08 19:35:31 -06:00
bash
Updated misc devel tools. ( #6897 )
2018-01-11 10:06:53 -06:00
bash-completion
Fix installation of bash-completion ( #6911 )
2018-01-14 15:40:22 -06:00
bats
bazel
bbcp
bbmap
bcftools
bcftools is a AutotoolsPackage. ( #6881 )
2018-01-10 09:45:05 -06:00
bcl2fastq2
bdftopcf
bdw-gc
bear
beast2
bedtools2
beforelight
benchmark
berkeley-db
bertini
bib2xhtml
bigreqsproto
binutils
libtool, binutils: fix darwin linking ( #7073 )
2018-01-28 15:36:24 +01:00
bioawk
biopieces
bison
bitmap
blast-plus
blat
blaze
bliss
blitz
Blitz 1.0.1 ( #6765 )
2018-01-06 12:02:41 -06:00
bmake
bmake@20171207: new package ( #7099 )
2018-01-31 13:42:41 +01:00
bml
bohrium
boost
Add boost 1.66.0 ( #7000 )
2018-01-20 17:10:25 +01:00
boostmplcartesianproduct
bowtie
bowtie2
boxlib
bpp-core
bpp-phyl
bpp-seq
bpp-suite
braker
branson
breakdancer
breseq
brigand
bsseeker2
bucky
busco
butter
bwa
byobu
bzip2
Bzip2 now uses 'spack_cc' as a compiler, instead of plain 'cc' ( #7074 )
2018-01-26 09:52:04 +01:00
c-blosc
caffe
cairo
Updated i3 dependencies. ( #6885 )
2018-01-10 11:02:07 -06:00
caliper
callpath
candle-benchmarks
cantera
canu
Do not construct path to perl command manually ( #6927 )
2018-01-13 22:10:42 -06:00
cap3
cares
cask
casper
casper: new package ( #6873 )
2018-01-09 22:07:05 -06:00
catalyst
Catalyst package ( #6834 )
2018-01-13 22:20:39 -06:00
catch
Updated catch to newer version (up to 2.1.0) ( #6933 )
2018-01-14 15:39:10 -06:00
cbench
cblas
cbtf
cbtf-argonavis
cbtf-argonavis-gui
cbtf-krell
cbtf-lanl
ccache
cctools
cdbfasta
cdd
cddlib
cdhit
cdo
cereal
cfitsio
Version update for cfitsio ( #7032 )
2018-01-23 09:44:40 +01:00
cgal
cgm
cgns
charm
check
chlorop
chombo
cityhash
clamr
cleaveland4
cleverleaf
clfft
clhep
Fix GEANT4 and make more portable and flexible ( #6956 )
2018-01-23 10:13:08 +01:00
clingo
clingo@5.2.2: new package ( #7091 )
2018-02-03 10:05:06 +01:00
cloc
cloog
cloverleaf
cloverleaf3d
clustalo
clustalw
cmake
Updated misc devel tools. ( #6897 )
2018-01-11 10:06:53 -06:00
cmocka
cmor
cnmem
cnpy
LBANN OS X ( #7105 )
2018-01-31 09:38:53 -08:00
cns-nospec
cntk
cntk1bitsgd
codar-cheetah
coevp
cohmm
coinhsl
coinhsl: add version 2014.01.10 ( #6909 )
2018-01-12 17:27:52 -06:00
comd
comd: more sane default ( #7046 )
2018-02-08 12:36:23 -05:00
compiz
compositeproto
conduit
updates to conduit and ascent packages ( #7040 )
2018-02-12 10:20:46 -08:00
constype
converge
coreutils
corset
cosmomc
cosp2
cp2k
cppad
cppcheck
Add version 1.81 of cppcheck ( #6912 )
2018-01-14 08:14:55 -06:00
cpprestsdk
cppunit
cppzmq
cram
cryptopp
cscope
csdp
ctffind
Add a package: ctffind. ( #6836 )
2018-01-05 13:46:48 -06:00
cub
cube
cuda
cuda-memtest
cudnn
cufflinks
cups
curl
cvs
czmq
dakota
daligner
damageproto
damselfly
darshan-runtime
darshan-util
dash
datamash
dataspaces
dbus
dealii
dealii: update CMake dependency ( #7010 )
2018-01-20 21:59:24 +01:00
dejagnu
delly2
denovogear
dia
Fix gtkplus build by hardcoding X11 support ( #6971 )
2018-01-23 15:24:20 -08:00
dialign-tx
diamond
diffsplice
new package: diffsplice ( #7187 )
2018-02-09 20:15:58 -08:00
direnv
discovar
discovardenovo
discovardenovo: adding new package ( #6888 )
2018-01-10 20:40:41 -06:00
dlpack
dmlc-core
dmxproto
docbook-xml
docbook-xsl
dos2unix
double-conversion
doxygen
dri2proto
dri3proto
dtcmp
dyninst
ea-utils
easybuild
ebms
eccodes
ecp-proxy-apps
editres
eigen
elemental
Changed keyword argument 'recurse' to 'recursive'
2018-02-13 02:18:28 -08:00
elfutils
elk
elpa
Changed keyword argument 'recurse' to 'recursive'
2018-02-13 02:18:28 -08:00
emacs
Fix gtkplus build by hardcoding X11 support ( #6971 )
2018-01-23 15:24:20 -08:00
emboss
encodings
environment-modules
es
esmf
espresso
essl
new package: essl ( #6335 )
2018-01-26 10:38:37 -08:00
ethminer
A new package: ethminer. ( #6908 )
2018-01-12 07:50:07 -06:00
etsf-io
everytrace
everytrace-example
evieext
exabayes
exampm
exasp2
exmcutils
exodusii
exonerate
expat
expect
express
extrae
exuberant-ctags
f90cache
falcon
farmhash
fastjar
fastmath
fastme
fastphase
fastq-screen
fastqc
fastqvalidator
fasttree
fastx-toolkit
fenics
ferret
ffmpeg
fftw
fftw package: improved libs implementation ( #7212 )
2018-02-13 18:26:15 -08:00
fimpute
findutils
fio
fish
Update fish url for fish 2.7.1 ( #7089 )
2018-02-04 09:05:44 +01:00
fixesproto
flac
flang
flann
flash
flecsale
flecsi
flex
flex: restrict GCC conflict to newer Ubuntu releases ( #6963 )
2018-01-20 21:36:45 +01:00
flint
flit
fltk
flux
fluxbox
fluxbox lightweight window manager ( #7169 )
2018-02-12 19:35:18 +01:00
fmt
foam-extend
folly
font-adobe-75dpi
font-adobe-100dpi
font-adobe-utopia-75dpi
font-adobe-utopia-100dpi
font-adobe-utopia-type1
font-alias
font-arabic-misc
font-bh-75dpi
font-bh-100dpi
font-bh-lucidatypewriter-75dpi
font-bh-lucidatypewriter-100dpi
font-bh-ttf
font-bh-type1
font-bitstream-75dpi
font-bitstream-100dpi
font-bitstream-speedo
font-bitstream-type1
font-cronyx-cyrillic
font-cursor-misc
font-daewoo-misc
font-dec-misc
font-ibm-type1
font-isas-misc
font-jis-misc
font-micro-misc
font-misc-cyrillic
font-misc-ethiopic
font-misc-meltho
font-misc-misc
font-mutt-misc
font-schumacher-misc
font-screen-cyrillic
font-sony-misc
font-sun-misc
font-util
font-winitzki-cyrillic
font-xfree86-type1
fontcacheproto
fontconfig
fontsproto
fonttosfnt
fpc
fr-hit
fr-hit: Create new package ( #7132 )
2018-01-31 19:28:48 +01:00
freebayes
freetype
fseq
fsl
fslsfonts
fstobdf
funhpc
gapbs
gapcloser
gapfiller
gasnet
gatk
gaussian
gawk
gblocks
gcc
gcc: add version 7.3.0 ( #7097 )
2018-01-31 13:41:12 +01:00
gccmakedep
gccxml
add patch for gccxml with gcc@5: ( #6913 )
2018-01-13 08:46:00 -06:00
gconf
gdal
macOS Fix for GDAL ( #7155 )
2018-02-03 10:06:35 +01:00
gdb
Updated misc devel tools. ( #6897 )
2018-01-11 10:06:53 -06:00
gdbm
gdbm: fix lmod global name 'spack_cc' undefined ( #7225 )
2018-02-14 08:41:50 +01:00
gdk-pixbuf
geant4
Fix GEANT4 and make more portable and flexible ( #6956 )
2018-01-23 10:13:08 +01:00
gearshifft
Cleanup: Remove Dbl Brackets ( #6848 )
2018-01-08 19:42:51 +01:00
gemmlowp
genemark-et
genometools
geos
gettext
gflags
ghostscript
Fix missing dependency in ghostscript ( #6866 )
2018-01-09 08:43:53 -06:00
ghostscript-fonts
giflib
git
Fix tests for git package ( #6869 )
2018-01-10 13:47:38 +01:00
git-imerge
git-imerge@1.1.0: new package ( #7203 )
2018-02-09 19:48:11 +01:00
git-lfs
gl2ps
glew
glfmultiples
new package: Glfmultiples ( #7055 )
2018-02-12 19:35:57 -08:00
glib
glib: Fix python handling ( #6910 )
2018-01-13 08:50:06 -06:00
glimmer
glimmer: Create new package ( #7208 )
2018-02-11 22:22:34 +01:00
glm
global
globalarrays
globus-toolkit
glog
glpk
glproto
gmake
gmap-gsnap
gmime
gmp
gmsh
gnat
gnu-prolog
gnupg
gnuplot
gnutls
go
go-bootstrap
gobject-introspection
googletest
gotcha
gource
gperf
gperftools
grackle
grackle package: add float option ( #7196 )
2018-02-12 14:32:24 -08:00
gradle
grandr
graphlib
graphmap
graphviz
Reworked the graphviz package ( #6865 )
2018-01-15 15:26:14 +01:00
grib-api
groff
gromacs
gsl
gslib
new package: gslib ( #6328 )
2018-01-23 10:42:06 -08:00
gtkorvo-atl
gtkorvo-cercs-env
gtkorvo-dill
gtkorvo-enet
gtkplus
Fix gtkplus build by hardcoding X11 support ( #6971 )
2018-01-23 15:24:20 -08:00
gts
guidance
guile
h5hut
h5part
h5utils
h5z-zfp
hacckernels
hadoop
hapcut2
haploview
harfbuzz
harminv
hdf
hdf5
Changed keyword argument 'recurse' to 'recursive'
2018-02-13 02:18:28 -08:00
hdf5-blosc
help2man
hepmc
heppdt
highfive
highfive: Update to version 1.5 ( #7041 )
2018-02-03 10:22:03 +01:00
highwayhash
hisat2
hmmer
hoomd-blue
hpccg
hpctoolkit
hpctoolkit-externals
hpgmg
hpgmg package: add debug option and new version ( #7175 )
2018-02-09 19:01:49 -08:00
hpl
hpx
hpx5
hsakmt
hstr
htop
htslib
httpie
hub
hunspell
hwloc
hybpiper
hydra
hypre
hypre: add libs method ( #7234 )
2018-02-14 09:21:13 +01:00
i3
Updated i3 dependencies. ( #6885 )
2018-01-10 11:02:07 -06:00
ibmisc
iceauth
icedtea
Fix gtkplus build by hardcoding X11 support ( #6971 )
2018-01-23 15:24:20 -08:00
icet
ico
icu4c
id3lib
idba
igraph
igv
ilmbase
image-magick
imake
impute2
infernal
inputproto
intel
intel-daal
intel-gpu-tools
intel-ipp
intel-mkl
intel-mkl-dnn
intel-mpi
Changed keyword argument 'recurse' to 'recursive'
2018-02-13 02:18:28 -08:00
intel-parallel-studio
fix ips 2018 vtune directory name ( #6893 )
2018-01-11 09:51:14 -06:00
intel-tbb
intltool
ior
iozone
ipopt
ipopt: fix lmod global name 'prefix' undefined bug ( #7224 )
2018-02-14 08:40:47 +01:00
isaac
isaac-server
isl
itstool
itsx
jags
jansson
jasper
jbigkit
A new package: jbigkit. ( #6847 )
2018-01-09 10:03:31 -06:00
jdk
jellyfish
casper: new package ( #6873 )
2018-01-09 22:07:05 -06:00
jemalloc
jmol
jq
json-c
json-cwx
json-glib
jsoncpp
judy
julia
kahip
kaks-calculator
kaldi
kallisto
kbproto
kdiff3
kealib
kentutils
kmergenie
kokkos
kraken
krims
kripke
kvasir-mpl
laghos
lammps
last
latte
launchmon
lazyten
lbann
LBANN OS X ( #7105 )
2018-01-31 09:38:53 -08:00
lbxproxy
lcals
lcms
ldc
ldc-bootstrap
legion
leveldb
lftp
libaec
libaio
libapplewm
libarchive
libarchive@3.3.2: new version ( #7113 )
2018-01-31 13:39:58 +01:00
libassuan
libatomic-ops
libbeagle
libbsd
libbson
libbson, libmongoc: Update to 1.9.1 ( #6900 )
2018-01-11 10:19:44 -06:00
libcanberra
libcap
libcerf
libcint
libcircle
libconfig
libcroco
A new package: libcroco. ( #7154 )
2018-02-03 10:07:02 +01:00
libctl
libdivsufsort
libdmx
libdrm
libdwarf
libdwarf: fix linking, fix build on Darwin ( #7124 )
2018-01-31 16:12:25 -08:00
libedit
libelf
libemos
libepoxy
libev
libevent
libevpath
libfabric
Added v1.4.2 to libfabric package ( #7053 )
2018-01-31 14:02:21 +01:00
libffi
libffs
libfontenc
libfs
libgcrypt
libgd
libgit2
Added libgit2@0.26.0 ( #6952 )
2018-01-20 21:57:41 +01:00
libgpg-error
libgpuarray
libgridxc
libgtextutils
libharu
package libharu: Add build deps ( #6883 )
2018-01-10 12:28:32 -06:00
libhio
libice
libiconv
Older versions of libiconv don't work with newer versions of GCC ( #6829 )
2018-01-10 09:47:33 -06:00
libint
libjpeg
libjpeg-turbo
libksba
liblbxutil
libmatheval
libmesh
libmng
libmongoc
libbson, libmongoc: Update to 1.9.1 ( #6900 )
2018-01-11 10:19:44 -06:00
libmonitor
libnbc
libogg
liboldx
libpcap
libpciaccess
libpfm4
libpipeline
libpng
libpsl
libpthread-stubs
libquo
libsigsegv
libsm
libsodium
libspatialindex
libsplash
libSplash: 1.7.0 ( #7199 )
2018-02-09 12:27:13 +01:00
libssh2
Added added libssh2@1.8.0 ( #6951 )
2018-01-20 21:56:55 +01:00
libsvm
libszip
libtermkey
libtiff
libtool
libtool: symlink correctly on darwin ( #7179 )
2018-02-14 13:52:44 -08:00
libunistring
libunwind
libuuid
libuv
libvorbis
libvterm
libwebsockets
libwindowswm
libx11
libxau
libxaw
libxaw3d
libxc
Changed keyword argument 'recurse' to 'recursive'
2018-02-13 02:18:28 -08:00
libxcb
libxcomposite
Fix GEANT4 and make more portable and flexible ( #6956 )
2018-01-23 10:13:08 +01:00
libxcursor
libxdamage
libxdmcp
libxevie
libxext
libxfixes
libxfont
libxfont2
libxfontcache
libxft
libxi
libxinerama
libxkbcommon
libxkbfile
libxkbui
libxml2
libxmu
libxp
libxpm
libxpresent
libxprintapputil
libxprintutil
libxrandr
libxrender
libxres
libxscrnsaver
libxshmfence
libxslt
libxsmm
LIBXSMM 1.8.3 ( #7183 )
2018-02-06 14:31:18 +01:00
libxstream
libxt
libxtrap
libxtst
libxv
libxvmc
libxxf86dga
libxxf86misc
libxxf86vm
libyogrt
libzip
likwid
Do not construct path to perl command manually ( #6927 )
2018-01-13 22:10:42 -06:00
linkphase3
linux-headers
listres
llvm
llvm: add version 5.0.1 ( #6957 )
2018-01-20 21:09:31 +01:00
llvm-lld
llvm-openmp-ompt
lmdb
lmod
lndir
log4cplus
A new package: log4cplus. ( #7015 )
2018-01-23 09:47:34 +01:00
log4cxx
lrslib
lrzip
lua
lua-bitlib
lua-jit
lua-lpeg
lua-luafilesystem
lua-luaposix
lua-mpack
luit
lulesh
lumpy-sv
A new package: lumpy-sv. ( #7009 )
2018-01-20 18:38:31 +01:00
lwgrp
lwm2
lz4
lz4 platform=darwin: fix dylib name ( #7112 )
2018-01-31 16:12:44 -08:00
lzma
lzo
m4
macsio
mad-numdiff
mafft
magics
magma
makedepend
mallocmc
man-db
maq
maq: Create new package. ( #7133 )
2018-01-31 13:12:43 +01:00
mariadb
masa
masurca
matio
matlab
maven
maverick
mawk
mbedtls
mcl
mdtest
meep
mefit
memaxes
meme
meraculous
mercurial
mesa
Update gl/qt options for vtk package ( #6551 )
2018-01-22 10:46:44 -08:00
mesa-glu
meshkit
meson
mesquite
metaphysicl
metasv
metis
Fix for building METIS 4.0.3 with '~shared'. ( #7202 )
2018-02-13 02:22:25 -08:00
mfem
microbiomeutil
minced
miniaero
miniamr
miniconda2
miniconda3
minife
minighost
minigmg
minimap2
minimd
miniqmc
miniqmc: initial commit ( #6991 )
2018-01-19 09:38:21 -07:00
minisign
minismac2d
minitri
minixyce
mira
mirdeep
mitofates
mitos
mkfontdir
mkfontscale
mlhka
moab
molcas
mono
mosh
mothur
motif
Fix GEANT4 and make more portable and flexible ( #6956 )
2018-01-23 10:13:08 +01:00
motioncor2
mozjs
mpc
mpe2
mpest
mpfr
mpibash
mpiblast
mpich
filter_compiler_path: added the possibility to narrow search path
2018-02-13 02:18:28 -08:00
mpifileutils
mpileaks
mpip
mpir
mpix-launch-swift
mrbayes
mrnet
mrtrix3
msgpack-c
mshadow
multitail
multiverso
mummer
mumps
munge
muparser
muscle
muse
muster
mvapich2
filter_compiler_path: added the possibility to narrow search path
2018-02-13 02:18:28 -08:00
mxml
mxnet
nag
nalu
namd
nano
nanoflann
nasm
nauty
ncbi-rmblastn
nccl
nccmp
ncdu
ncftp
ncl
nco
ncurses
Changed keyword argument 'recurse' to 'recursive'
2018-02-13 02:18:28 -08:00
ncview
ndiff
nek5000
Update Nek5000 package to Version 17 ( #7178 )
2018-02-03 17:05:14 -06:00
nekbone
nekcem
neovim
netcdf
netcdf-cxx
netcdf-cxx4
netcdf-fortran
Changed keyword argument 'recurse' to 'recursive'
2018-02-13 02:18:28 -08:00
netgauge
netgen
netlib-lapack
Changed keyword argument 'recurse' to 'recursive'
2018-02-13 02:18:28 -08:00
netlib-scalapack
Changed keyword argument 'recurse' to 'recursive'
2018-02-13 02:18:28 -08:00
netlib-xblas
netlib-xblas 1.0.248: new package ( #7024 )
2018-01-24 08:28:05 +01:00
nettle
neuron
nextflow
nfft
nghttp2
nginx
ngmlr
ninja
ninja-fortran
nlopt
nmap
nnvm
node-js
notmuch
npb
npm
npth
nspr
numactl
numdiff
nut
nwchem
ocaml
ocaml@4.06.0: new version ( #7078 )
2018-01-31 13:49:17 +01:00
oce
oclint
oclint: new package ( #7076 )
2018-02-06 06:35:17 +01:00
oclock
octave
octave-optim
octave-splines
octave-struct
octopus
of-adios-write
ompss
ompt-openmp
oniguruma
ont-albacore
opa-psm2
opa-psm2: new package ( #6874 )
2018-01-10 09:45:34 -06:00
opam
opam: new package ( #7079 )
2018-01-31 13:44:09 +01:00
opari2
openbabel
openblas
opencoarrays
opencv
openexr
openfast
Updating OpenFAST to use explicit lapack and blas libraries from Spack. ( #6824 )
2018-01-06 12:01:06 -06:00
openfoam-com
openfoam-org
Explicitly cast Version to str in openfoam-org ( #6880 )
2018-01-10 13:48:22 +01:00
openfst
opengl
Update gl/qt options for vtk package ( #6551 )
2018-01-22 10:46:44 -08:00
openjpeg
openmc
openmpi
Changed keyword argument 'recurse' to 'recursive'
2018-02-13 02:18:28 -08:00
opennurbs
openscenegraph
openspeedshop
Changed keyword argument 'recurse' to 'recursive'
2018-02-13 02:18:28 -08:00
openssh
openssl
opium
opus
orfm
orthomcl
osu-micro-benchmarks
Added osu-micro-benchmarks@5.4 ( #7149 )
2018-01-31 16:10:14 -08:00
otf
otf2
p4est
p7zip
pacbio-daligner
pacbio-damasker
pacbio-dazz-db
pacbio-dextractor
pagit
pagmo
paml
panda
pandaseq
pango
Add url_for_version to pango package ( #6939 )
2018-01-15 14:05:27 -06:00
papi
paradiseo
parallel
parallel-netcdf
paraver
paraview
parmetis
Fix type issues with setting flag handlers ( #6960 )
2018-01-18 17:55:44 -08:00
parmgridgen
parsimonator
parsplice
partitionfinder
patch
patchelf
pathfinder
pax-utils
pbmpi
pcma
pcre
Updated i3 dependencies. ( #6885 )
2018-01-10 11:02:07 -06:00
pcre2
pdsh
pdt
pegtl
pennant
percept
perl
perl-algorithm-diff
perl-app-cmd
perl-app-cmd: Create new package ( #7019 )
2018-01-22 07:09:34 +01:00
perl-array-utils
perl-array-utils: Create new package ( #7020 )
2018-01-22 07:10:17 +01:00
perl-b-hooks-endofscope
perl-bio-perl
perl-bit-vector
perl-capture-tiny
perl-carp-clan
perl-class-data-inheritable
perl-class-inspector
perl-class-load
perl-class-load-xs
perl-cpan-meta-check
perl-data-optlist
perl-data-stag
perl-dbd-mysql
perl-dbfile
perl-dbi
perl-devel-cycle
perl-devel-globaldestruction
perl-devel-overloadinfo
perl-devel-stacktrace
perl-digest-md5
perl-digest-md5: Create new package ( #6852 )
2018-01-08 19:35:48 -06:00
perl-dist-checkconflicts
perl-encode-locale
perl-eval-closure
perl-exception-class
perl-exporter-tiny
new package: perl-exporter-tiny ( #7030 )
2018-02-02 10:28:45 -08:00
perl-extutils-makemaker
perl-extutils-pkgconfig
perl-file-copy-recursive
perl-file-listing
perl-file-pushd
perl-file-sharedir-install
perl-file-slurp-tiny
perl-file-which
perl-font-ttf
perl-gd
perl-gd-graph
perl-gd-text
perl-graph
perl-graph: Create new package ( #7022 )
2018-01-22 07:10:58 +01:00
perl-html-parser
perl-html-tagset
perl-http-cookies
perl-http-daemon
perl-http-date
perl-http-message
perl-http-negotiate
perl-inline
perl-inline-c
perl-intervaltree
perl-io-html
perl-io-sessiondata
perl-io-socket-ssl
perl-io-string
perl-list-moreutils
perl-list-moreutils: Create new package ( #6997 )
2018-01-20 19:09:23 +01:00
perl-log-log4perl
perl-lwp
perl-lwp-mediatypes
perl-lwp-protocol-https
perl-math-cdf
perl-module-build
perl-module-runtime-conflicts
perl-moose
perl-mozilla-ca
perl-mro-compat
perl-namespace-clean
perl-net-http
perl-net-ssleay
perl-package-deprecationmanager
perl-package-stash
perl-package-stash-xs
perl-padwalker
perl-params-util
perl-parse-recdescent
perl-pdf-api2
perl-pegex
perl-perlio-gzip
perl-perlio-gzip: Create new package ( #7018 )
2018-01-22 07:08:41 +01:00
perl-soap-lite
perl-star-fusion
perl-statistics-descriptive
perl-sub-exporter
perl-sub-exporter-progressive
perl-sub-identify
perl-sub-install
perl-sub-name
perl-sub-uplevel
perl-svg
perl-swissknife
perl-swissknife: Create new package ( #6851 )
2018-01-08 18:46:51 -06:00
perl-task-weaken
perl-term-readkey
perl-test-cleannamespaces
perl-test-deep
perl-test-differences
perl-test-exception
perl-test-fatal
perl-test-memory-cycle
perl-test-most
perl-test-needs
perl-test-requires
perl-test-requiresinternet
perl-test-warn
perl-test-warnings
perl-text-diff
perl-text-unidecode
perl-text-unidecode: Create new package ( #6854 )
2018-01-08 18:45:58 -06:00
perl-time-hires
perl-time-piece
perl-time-piece: Create new package ( #6853 )
2018-01-08 18:46:16 -06:00
perl-try-tiny
perl-uri
perl-uri-escape
perl-version
perl-www-robotrules
perl-xml-libxml
perl-xml-parser
perl-xml-parser-lite
perl-xml-simple
perl-xml-simple: Create new package ( #6849 )
2018-01-08 19:36:04 -06:00
perl-yaml-libyaml
petsc
petsc: use spack-built python for configure ( #7176 )
2018-02-09 13:11:03 -08:00
pexsi
pfft
pflotran
pfunit
pgdspider
pgi
phantompeakqualtools
phasta
phylip
picard
pidx
pigz
piranha
pixman
pkg-config
pkgconf
Updated i3 dependencies. ( #6885 )
2018-01-10 11:02:07 -06:00
planck-likelihood
plasma
plink
plumed
pmgr-collective
pmix
pnfft
pngwriter
PNGwriter: 0.7.0 ( #7026 )
2018-01-31 14:34:52 +01:00
poamsa
pocl
polymake
porta
portage
postgresql
ppl
prank
presentproto
preseq
price
primer3
printproto
probconsrna
prodigal
prodigal: Create new package ( #6870 )
2018-01-09 12:57:58 -06:00
proj
protobuf
Protobuf fix ( #7110 )
2018-01-31 09:39:53 -08:00
proxymngr
pruners-ninja
ps-lite
psi4
pstreams
pugixml
pumi
pvm
py-3to2
py-4suite-xml
py-abipy
py-adios
py-alabaster
py-apache-libcloud
py-apipkg
py-appdirs
py-appnope
py-apscheduler
py-argcomplete
py-argparse
py-ase
py-asn1crypto
py-astroid
py-astropy
py-attrs
py-autopep8
Update py-autopep8 to 1.3.3 ( #6914 )
2018-01-13 22:05:44 -06:00
py-babel
py-backports-abc
py-backports-functools-lru-cache
Update py-backports-functools-lru-cache to 1.4 ( #6915 )
2018-01-14 15:39:53 -06:00
py-backports-shutil-get-terminal-size
py-backports-ssl-match-hostname
py-basemap
py-beautifulsoup4
py-binwalk
py-biom-format
py-biopython
py-bitarray
Efficient array of booleans, C extension ( #7135 )
2018-02-01 18:48:32 +00:00
py-bleach
py-blessings
py-bokeh
py-boltons
py-bottleneck
py-brian
py-brian2
py-bsddb3
py-bx-python
py-cclib
py-cdat-lite
py-cdo
py-certifi
py-cffi
py-chardet
py-checkm-genome
py-checkm-genome: Create new package ( #7200 )
2018-02-09 19:37:16 +01:00
py-click
py-cogent
py-colorama
py-colormath
py-configparser
py-counter
py-coverage
py-cpuinfo
py-cryptography
py-csvkit
py-current
py-cutadapt
py-cycler
py-cython
py-dask
py-dateutil
py-dbf
py-decorator
py-deeptools
py-dendropy
py-dev
py-dill
py-dlcpar
py-docutils
py-doxypy
py-doxypy conflicts python3 ( #6916 )
2018-01-13 22:07:14 -06:00
py-doxypypy
py-dryscrape
py-dxchange
py-dxfile
py-easybuild-easyblocks
py-easybuild-easyconfigs
py-easybuild-framework
py-edffile
py-editdistance
py-elasticsearch
py-elephant
Update py-elephant to 0.4.1 ( #6917 )
2018-01-13 08:44:43 -06:00
py-emcee
py-entrypoints
py-enum34
py-epydoc
py-espresso
py-espressopp
py-et-xmlfile
py-execnet
py-fastaindex
py-fasteners
py-faststructure
py-fiscalyear
py-flake8
Update py-flake8 to 3.5.0 ( #6918 )
2018-01-13 22:07:46 -06:00
py-flask
py-flexx
py-fparser
Py-fparser: python parser for Fortran code ( #6794 )
2018-01-14 15:42:17 -06:00
py-funcsigs
py-functools32
py-future
py-futures
py-genders
py-genshi
py-git2
py-git-review
add version 1.26 to py-git-review and fix run_env ( #6919 )
2018-01-13 22:08:05 -06:00
py-gnuplot
py-griddataformats
py-guidata
py-guiqwt
py-h5py
py-html2text
py-html5lib
py-htseq
py-httpbin
py-hypothesis
py-idna
py-igraph
py-imagesize
py-iminuit
py-importlib
py-ipaddress
py-ipdb
py-ipykernel
py-ipython
py-ipython-genutils
py-ipywidgets
py-isort
py-itsdangerous
py-jdcal
py-jedi
py-jinja2
py-joblib
py-jpype
py-jsonschema
py-junit-xml
py-jupyter-client
py-jupyter-console
py-jupyter-core
py-jupyter-notebook
py-keras
py-latexcodec
py-lazy
py-lazy-object-proxy
py-lazyarray
py-libconf
py-libensemble
py-line-profiler
py-linecache2
py-lit
py-llvmlite
py-lmfit
py-localcider
py-localcider: Create new package ( #7189 )
2018-02-06 13:52:37 +01:00
py-lockfile
py-logilab-common
py-lrudict
py-lxml
py-lzstring
py-macholib
py-machotools
py-macs2
py-mako
py-mappy
py-markdown
py-markupsafe
py-matplotlib
py-mccabe
Add py-mccabe versions up to 0.6.1 ( #6920 )
2018-01-13 22:08:18 -06:00
py-mdanalysis
py-meep
py-memory-profiler
py-methylcode
py-misopy
py-mistune
py-mock
py-moltemplate
py-mongo
py-monotonic
py-monty
py-mpi4py
py-mpmath
py-multiprocess
py-multiqc
py-mx
py-mxnet
py-myhdl
py-mysqldb1
py-nbconvert
py-nbformat
py-neo
Update py-neo to 0.5.2 ( #6921 )
2018-01-13 22:08:38 -06:00
py-nestle
py-netcdf4
py-netifaces
py-networkx
py-nose
py-nosexcover
py-numba
py-numexpr
py-numpy
py-numpydoc
py-olefile
py-ont-fast5-api
py-openpmd-validator
openPMD-validator ( #7064 )
2018-01-31 13:59:38 +01:00
py-openpyxl
py-ordereddict
py-oset
py-packaging
py-palettable
py-pandas
py-paramiko
py-pathlib2
py-pathos
py-pathspec
py-patsy
py-pbr
py-periodictable
py-petsc4py
py-pexpect
py-phonopy
py-pickleshare
py-pil
py-pillow
py-pip
py-pipits
py-pkgconfig
py-plotly
py-ply
py-pmw
py-pox
py-ppft
py-prettytable
py-proj
py-prompt-toolkit
py-protobuf
py-psutil
py-psyclone
py-psyclone: Parallelisation System for climate models ( #6797 )
2018-01-06 12:02:13 -06:00
py-ptyprocess
py-pudb
py-py
py-py2bit
py-py2cairo
py-py2neo
py-py4j
py-pyani
py-pyasn1
py-pybedtools
py-pybedtools: adding older version 0.6.9 ( #7107 )
2018-02-14 08:46:10 +01:00
py-pybigwig
py-pybind11
pybind11: 2.2.[1,2] & develop ( #7216 )
2018-02-11 18:00:22 +01:00
py-pybtex
py-pybtex-docutils
py-pychecker
py-pycodestyle
Add py-pycodestyle versions up to 2.3.1 ( #6922 )
2018-01-13 22:08:51 -06:00
py-pycparser
py-pycrypto
py-pycurl
py-pydatalog
py-pydispatcher
py-pydot
py-pyelftools
py-pyfasta
py-pyfftw
py-pyflakes
Add py-pyflakes versions up to 1.6.0 ( #6923 )
2018-01-13 22:09:17 -06:00
py-pygments
py-pygobject
py-pygtk
Fix gtkplus build by hardcoding X11 support ( #6971 )
2018-01-23 15:24:20 -08:00
py-pylint
py-pymatgen
py-pyminifier
py-pympler
py-pynn
Add PyNN 0.9.1 ( #6926 )
2018-01-13 22:10:10 -06:00
py-pypar
py-pyparsing
py-pypeflow
py-pyprof2html
py-pyqt
py-pyrad
py-pysam
py-pyscaf
py-pyserial
py-pyside
py-pysocks
py-pytables
py-pytest
py-pytest-cov
py-pytest-flake8
py-pytest-httpbin
py-pytest-mock
py-pytest-runner
py-pytest-xdist
py-python-daemon
py-python-gitlab
py-pythonqwt
py-pytz
py-pywavelets
py-pyyaml
py-qtawesome
py-qtconsole
py-qtpy
py-quantities
py-radical-utils
py-ranger
py-readme-renderer
py-regex
py-reportlab
py-requests
py-restview
py-rope
py-rpy2
py-rsa
py-rseqc
py-rtree
py-saga-python
py-scandir
py-scientificpython
py-scikit-image
py-scikit-learn
py-scipy
py-seaborn
py-setuptools
py-setuptools-git
py-setuptools-git: Create new package ( #7131 )
2018-01-31 16:52:34 +01:00
py-setuptools-scm
py-sfepy
py-sh
py-shiboken
py-simplegeneric
py-simplejson
py-singledispatch
py-sip
py-six
py-slepc4py
py-sncosmo
py-snowballstemmer
py-spectra
py-spefile
py-spglib
py-sphinx
py-sphinx-bootstrap-theme
py-sphinx-rtd-theme
py-sphinxcontrib-bibtex
py-sphinxcontrib-programoutput
py-sphinxcontrib-websupport
py-spyder
py-spykeutils
py-sqlalchemy
py-statsmodels
py-storm
py-subprocess32
py-symengine
py-symfit
py-sympy
py-tabulate
py-tappy
py-terminado
py-tetoolkit
py-theano
py-tifffile
py-toml
py-tomopy
py-tornado
py-tqdm
py-traceback2
py-traitlets
py-tuiview
py-twisted
py-typing
py-tzlocal
py-umi-tools
py-unittest2
py-unittest2py3k
py-urllib3
py-urwid
py-vcversioner
py-virtualenv
py-vsc-base
py-vsc-install
py-wcsaxes
py-wcwidth
py-webkit-server
py-werkzeug
py-wheel
py-widgetsnbextension
py-wrapt
py-xarray
py-xattr
py-xlrd
py-xlsxwriter
py-xmlrunner
py-xopen
py-xpyb
py-xvfbwrapper
py-yapf
py-yt
py-zmq
python
Set a default python that is consistent with the libraries in PYTHONHOME ( #7157 )
2018-02-11 23:08:45 -08:00
qbank
qbox
qhull
qmcpack
qmd-progress
qrupdate
qt
Update gl/qt options for vtk package ( #6551 )
2018-01-22 10:46:44 -08:00
qt-creator
qtgraph
qthreads
quinoa
qwt
r
R package: add version v3.2.5 ( #7139 )
2018-02-13 12:11:52 -08:00
r-a4
r-a4base
r-a4classif
r-a4core
r-a4preproc
r-a4reporting
r-abadata
r-abaenrichment
r-abind
r-absseq
r-acde
r-acepack
r-acgh
r-acme
r-ada
r-adabag
r-ade4
r-adegenet
r-adsplit
r-affxparser
r-affy
r-affycomp
r-affycompatible
r-affycontam
r-affycoretools
r-affydata
r-affyexpress
r-affyilm
r-affyio
r-affypdnn
r-affyplm
r-affyqcreport
r-affyrnadegradation
r-agdex
r-agilp
r-agimicrorna
r-aims
r-aldex2
r-allelicimbalance
r-alpine
r-als
r-alsace
r-altcdfenvs
r-ampliqueso
r-analysispageserver
r-anaquin
r-aneufinder
r-aneufinderdata
r-annaffy
r-annotate
r-annotationdbi
r-annotationfilter
r-annotationforge
r-annotationhub
r-ape
r-assertthat
r-backports
r-bamsignals
r-base64
r-base64enc
r-beanplot
r-bh
r-bindr
r-bindrcpp
r-biobase
r-biocgenerics
r-biocinstaller
r-biocparallel
r-biocstyle
r-biocstyle: Create new package. ( #6503 )
2018-01-10 23:13:31 -06:00
r-biomart
r-biomformat
r-biostrings
r-biovizbase
r-bit
r-bit64
r-bitops
r-blob
r-bookdown
r-bookdown: Create new package. ( #6504 )
2018-01-10 23:13:12 -06:00
r-boot
r-brew
r-broom
r-bsgenome
r-bumphunter
r-c50
r-callr
r-car
r-caret
r-category
r-catools
r-cellranger
r-checkmate
r-checkpoint
r-chemometrics
r-chron
r-circlize
r-class
r-classint
r-cli
r-clipr
r-cluster
r-clusterprofiler
r-coda
r-codetools
r-coin
r-colorspace
r-complexheatmap
r-corpcor
r-corrplot
r-covr
r-cowplot
r-crayon
r-crosstalk
r-cubature
r-cubist
r-curl
r-data-table
r-dbi
r-dbplyr
r-delayedarray
r-deldir
r-dendextend
r-deoptim
r-deoptimr
r-deseq
r-deseq2
r-desolve
r-devtools
r-diagrammer
r-dichromat
r-diffusionmap
r-digest
r-diptest
r-dnacopy
r-do-db
r-domc
r-doparallel
r-dorng
r-dose
r-downloader
r-dplyr
r-dt
r-dtw
r-dygraphs
r-e1071
r-edger
r-ellipse
r-ensembldb
r-ergm
r-evaluate
r-expm
r-factoextra
r-factominer
r-ff
r-fftwtools
r-fgsea
r-filehash
r-flashclust
r-flexmix
r-fnn
r-forcats
r-foreach
r-forecast
r-foreign
r-formatr
r-formula
r-fpc
r-fracdiff
r-futile-logger
r-futile-options
r-gbm
r-gcrma
r-gdata
r-gdsfmt
r-gdsfmt: new package ( #7035 )
2018-01-23 09:42:10 +01:00
r-geiger
r-genefilter
r-geneplotter
r-genomeinfodb
r-genomeinfodbdata
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-geomorph
r-geoquery
r-geosphere
r-getopt
r-getopt: new package ( #6973 )
2018-01-20 19:18:07 +01:00
r-getoptlong
r-ggally
r-ggbio
r-ggdendro
r-ggjoy
r-ggmap
r-ggplot2
r-ggpubr
r-ggrepel
r-ggridges
r-ggsci
r-ggvis
r-gistr
r-git2r
r-glmnet
r-globaloptions
r-glue
r-gmodels
r-gmp
r-go-db
r-googlevis
r-gosemsim
r-gostats
r-gplots
r-graph
r-gridbase
r-gridextra
r-gseabase
r-gsubfn
r-gtable
r-gtools
r-gtrellis
r-gviz
r-haven
r-hexbin
r-highr
r-hmisc
r-hms
r-htmltable
r-htmltools
r-htmlwidgets
r-httpuv
r-httr
r-hwriter
r-hypergraph
r-ica
r-igraph
r-illuminaio
r-impute
r-influencer
r-inline
r-interactivedisplaybase
r-ipred
r-iranges
r-irdisplay
r-irkernel
r-irlba
r-iso
r-iterators
r-janitor
r-jaspar2018
r-jaspar2018: Create new package. ( #7221 )
2018-02-14 08:35:16 +01:00
r-jpeg
r-jsonlite
r-kegg-db
r-kegggraph
r-keggrest
r-kernlab
r-kernsmooth
r-kknn
r-knitr
r-labeling
r-lambda-r
r-laplacesdemon
r-lars
r-lattice
r-latticeextra
r-lava
r-lazyeval
r-leaflet
r-leaps
r-learnbayes
r-limma
r-lme4
r-lmtest
r-locfit
r-log4r
r-lpsolve
r-lsei
r-lubridate
r-magic
r-magrittr
r-makecdfenv
r-maldiquant
r-mapproj
r-maps
r-maptools
r-markdown
r-mass
r-matrix
r-rcppblaze: new package ( #7209 )
2018-02-13 14:07:18 +01:00
r-matrixmodels
r-matrixstats
r-mclust
r-mcmcglmm
r-mda
r-memoise
r-mergemaid
r-methodss3
r-mgcv
r-powerlaw: new package ( #7222 )
2018-02-14 08:36:34 +01:00
r-mime
r-minfi
r-minqa
r-mixtools
r-mlbench
r-mlinterfaces
r-mnormt
r-modelmetrics
r-modelr
r-modeltools
r-mpm
r-msnbase
r-multcomp
r-multtest
r-munsell
r-mvtnorm
r-mzid
r-mzr
r-nanotime
r-ncbit
r-ncdf4
r-network
r-networkd3
r-nlme
r-nloptr
r-nmf
r-nnet
r-nnls
r-nor1mix
r-np
r-numderiv
r-oligoclasses
r-oo
r-openssl
r-org-hs-eg-db
r-organismdbi
r-packrat
r-pacman
r-pamr
r-party
r-partykit
r-pathview
r-pbapply
r-pbdzmq
r-pbkrtest
r-pcamethods
r-pcapp
r-permute
r-pfam-db
r-phantompeakqualtools
r-phyloseq
r-pkgconfig
r-pkgmaker
r-plogr
r-plotly
r-plotrix
r-pls
r-plyr
r-pmcmr
r-png
r-powerlaw
r-powerlaw: new package ( #7222 )
2018-02-14 08:36:34 +01:00
r-prabclus
r-praise
r-preprocesscore
r-prettyunits
r-prodlim
r-progress
r-protgenerics
r-proto
r-proxy
r-pryr
r-psych
r-ptw
r-purrr
r-quadprog
r-quantmod
r-quantreg
r-quantro
r-qvalue
r-r6
r-randomforest
r-ranger
r-rappdirs
r-rappdirs: Create new package. ( #6891 )
2018-01-14 15:41:32 -06:00
r-raster
r-rbgl
r-rbokeh
r-rcolorbrewer
r-rcpp
r-rcpparmadillo
r-rcppblaze
r-rcppblaze: new package ( #7209 )
2018-02-13 14:07:18 +01:00
r-rcppcctz
r-rcppeigen
r-rcppprogress
r-rcurl
r-rda
r-readr
r-readxl
r-registry
r-rematch
r-reordercluster
r-reportingtools
r-repr
r-reprex
r-reshape
r-reshape2
r-rex
r-rgdal
r-rgeos
r-rgl
r-rgooglemaps
r-rgraphviz
r-rhdf5
r-rhtslib
r-rinside
r-rjags
r-rjava
r-rjson
r-rjsonio
r-rlang
r-rmarkdown
r-rmarkdown: Update version to 1.7 ( #6506 )
2018-01-10 23:12:35 -06:00
r-rminer
r-rmpfr
r-rmpi
r-rmysql
r-rngtools
r-robustbase
r-rocr
r-rodbc
r-roxygen2
r-rpart
r-rpart-plot
r-rpostgresql
r-rprojroot
r-rprojroot: Create new package. ( #6505 )
2018-01-10 23:12:54 -06:00
r-rsamtools
r-rsnns
r-rsqlite
r-rstan
r-rstudioapi
r-rtracklayer
r-rtsne
r-rvcheck
r-rvest
r-rzmq
r-s4vectors
r-samr
r-sandwich
r-scales
r-scatterplot3d
r-sdmtools
r-segmented
r-selectr
r-seqinr
r-seqlogo
r-seqlogo: new package ( #7229 )
2018-02-14 09:42:40 +01:00
r-seurat
r-sfsmisc
r-shape
r-shiny
r-shortread
r-siggenes
r-simpleaffy
r-sn
r-snow
r-snprelate
r-snprelate: new package ( #7036 )
2018-01-23 09:43:22 +01:00
r-som
r-somaticsignatures
r-sourcetools
r-sp
r-sparsem
r-spdep
r-speedglm
r-sqldf
r-stanheaders
r-statmod
r-statnet-common
r-stringi
r-stringr
r-strucchange
r-subplex
r-summarizedexperiment
r-survey
r-survival
r-sva
r-tarifx
r-tclust
r-tensora
r-testit
r-testthat
r-tfmpvalue
r-tfmpvalue: new package ( #7230 )
2018-02-14 08:49:09 +01:00
r-th-data
r-threejs
r-tibble
r-tidycensus
r-tidyr
r-tiff
r-tigris
r-timedate
r-topgo
r-trimcluster
r-trust
r-tseries
r-tsne
r-ttr
r-udunits2
r-units
r-utils
r-uuid
r-variantannotation
r-varselrf
r-vcd
r-vegan
r-vgam
r-viridis
r-viridislite
r-visnetwork
r-vsn
r-whisker
r-withr
r-xde
r-xgboost
r-xlconnect
r-xlconnectjars
r-xlsx
r-xlsxjars
r-xmapbridge
r-xml
r-xml2
r-xtable
r-xts
r-xvector
r-yaml
r-yapsa
r-yaqcaffy
r-yarn
r-zlibbioc
r-zoo
raft
raja
RAJA package: add versions and CUDA/openmp support ( #7201 )
2018-02-12 10:34:54 -08:00
randfold
random123
randrproto
ravel
raxml
ray
rdp-classifier
re2c
re2c@1.0.3: new package ( #7092 )
2018-01-31 13:46:17 +01:00
readline
recordproto
redundans
relion
rempi
rename
rendercheck
renderproto
repeatmasker
Do not construct path to perl command manually ( #6927 )
2018-01-13 22:10:42 -06:00
resourceproto
revbayes
rgb
rhash
rlwrap
rmlab
Rmlab: Control PNG ( #6846 )
2018-01-08 09:14:38 -06:00
rna-seqc
rna-seqc package: JAVA_{ARGS,OPTS} for helper script ( #6972 )
2018-01-29 20:23:59 -08:00
rockstar
root
rose
rr
rsbench
rsem
rstart
rsync
rtags
rtags: add 2.17 and for now comment-out 2.12 ( #7126 )
2018-01-31 13:36:22 +01:00
rtax
ruby
ruby: fix +openssl & +readline variants ( #6935 )
2018-01-15 09:00:07 -06:00
ruby-gnuplot
ruby-narray
ruby-rubyinline
ruby-terminal-table
rust
rust-bindgen
sabre
sailfish
sailfish: Create new package ( #6827 )
2018-01-05 15:08:45 -06:00
salmon
sambamba
samblaster
samblaster: Create new package ( #7188 )
2018-02-06 13:54:05 +01:00
samrai
samtools
sandbox
sas
satsuma2
savanna
saws
sbt
scala
scalasca
scalpel
scan-for-matches
scons
scorec-core
scorep
scotch
Changed keyword argument 'recurse' to 'recursive'
2018-02-13 02:18:28 -08:00
scr
screen
scripts
scrnsaverproto
sctk
sdl2
sdl2-image
sed
seqprep
seqtk
serf
sessreg
setxkbmap
sga
shapeit
shared-mime-info
shiny-server
shortbred
shortbred: Create new package ( #7210 )
2018-02-11 22:26:35 +01:00
shortstack
showfont
sickle
siesta
Siesta: only apply patch to <4.1 and fix Intel compiler ( #6466 )
2018-01-06 12:03:54 -06:00
signalp
signify
silo
simplemoc
simul
simulationio
singularity
slepc
slurm
Fix gtkplus build by hardcoding X11 support ( #6971 )
2018-01-23 15:24:20 -08:00
smalt
smc
smproxy
snakemake
snap
snap-berkeley
snap-korf
snappy
snbone
sniffles
sniffles: add version 1.0.7 ( #7004 )
2018-01-20 18:39:29 +01:00
snptest
soap2
soapindel
soapsnp
somatic-sniper
sortmerna
sosflow
sowing
sox
spades
spark
sparsehash
sparta
spdlog
spectrum-mpi
speex
sph2pipe
spherepack
spindle
spot
sqlite
squid
sra-toolkit
sspace-longread
sspace-standard
sst-dumpi
sst-macro
stacks
staden-io-lib
star
star-ccm-plus
startup-notification
stat
stc
fix swift-t packages dependencies ( #6530 )
2018-01-08 17:25:15 +01:00
stow
stow: new package ( #7235 )
2018-02-14 09:42:05 +01:00
stream
strelka
stress
stringtie
stringtie: add version 1.3.4a ( #7164 )
2018-02-03 09:52:51 +01:00
structure
sublime-text
subread
subversion
suite-sparse
sumaclust
sundials
superlu
superlu-dist
superlu-mt
sw4lite
swarm
swfft
swiftsim
swig
symengine
sympol
sz
tabix
talloc
tantan
tar
targetp
task
taskd
tasmanian
tassel
tau
tcl
tcoffee
tcsh
tealeaf
tetgen
tethex
texinfo
Updated misc devel tools. ( #6897 )
2018-01-11 10:06:53 -06:00
texlive
the-platinum-searcher
the-silver-searcher
thrift
thrust
tig
tinyxml
tinyxml2
tioga
tk
tmalign
tmhmm
tmux
tmuxinator
tophat
tppred
transabyss
transdecoder
transposome
transset
trapproto
tree
trf
triangle
trilinos
trimgalore
trimmomatic
turbine
fix swift-t packages dependencies ( #6530 )
2018-01-08 17:25:15 +01:00
turbomole
tut
twm
tycho2
typhonio
uberftp
ucx
ucx: update for release 1.2.2 ( #6990 )
2018-01-18 13:41:16 -07:00
udunits2
ufo-core
ufo-filters
unblur
Add a new package: unblur. ( #6867 )
2018-01-10 09:35:00 -06:00
uncrustify
unibilium
unison
units
unixodbc
usearch
util-linux
util-macros
uuid
valgrind
Updated misc devel tools. ( #6897 )
2018-01-11 10:06:53 -06:00
vampirtrace
vardictjava
vardictjava: Adding version 1.4.4 ( #7223 )
2018-02-14 08:38:06 +01:00
varscan
vc
vcftools
Do not construct path to perl command manually ( #6927 )
2018-01-13 22:10:42 -06:00
vcsh
vdt
vecgeom
veclibfort
Changed keyword argument 'recurse' to 'recursive'
2018-02-13 02:18:28 -08:00
vegas2
velvet
videoproto
viennarna
viewres
vim
make vim python3 compatible ( #6925 )
2018-01-14 15:39:33 -06:00
virtualgl
visit
Visit 2.13.0 ( #6947 )
2018-01-21 09:16:23 -06:00
vizglow
vmatch
voropp
votca-csg
votca-ctp
votca-moo
votca-tools
votca-xtp
vpfft
vpic
vsearch
vtk
Update gl/qt options for vtk package ( #6551 )
2018-01-22 10:46:44 -08:00
vtkh
vtkm
wannier90
wget
windowswmproto
wt
wx
Fix gtkplus build by hardcoding X11 support ( #6971 )
2018-01-23 15:24:20 -08:00
wxpropgrid
x11perf
xapian-core
xauth
xbacklight
xbiff
xbitmaps
xbraid
xbraid: add libs method ( #7233 )
2018-02-14 10:40:56 +01:00
xcalc
xcb-demo
xcb-proto
xcb-util
xcb-util-cursor
xcb-util-errors
xcb-util-image
xcb-util-keysyms
xcb-util-renderutil
xcb-util-wm
xcb-util-xrm
xclip
xclipboard
xclock
xcmiscproto
xcmsdb
xcompmgr
xconsole
xcursor-themes
xcursorgen
xdbedizzy
xditview
xdm
xdpyinfo
xdriinfo
xedit
xerces-c
xev
xextproto
xeyes
xf86bigfontproto
xf86dga
xf86dgaproto
xf86driproto
xf86miscproto
xf86rushproto
xf86vidmodeproto
xfd
xfindproxy
xfontsel
xfs
xfsinfo
xfwp
xgamma
xgc
xhost
xineramaproto
xinit
xinput
xios
xkbcomp
xkbdata
xkbevd
xkbprint
xkbutils
xkeyboard-config
xkill
xload
xlogo
xlsatoms
xlsclients
xlsfonts
xmag
xman
xmessage
xmh
xmlf90
xmlto
xmodmap
xmore
xorg-cf-files
xorg-docs
xorg-gtest
xorg-server
xorg-sgml-doctools
xphelloworld
xplor-nih
xplsprinters
xpr
xprehashprinterlist
xprop
xproto
xproxymanagementprotocol
xqilla
xrandr
xrdb
xrefresh
xrootd
xrx
xsbench
xscope
xsdk
Added Nox for Trilinos installation by xSDK ( #7219 )
2018-02-13 02:20:59 -08:00
xsdktrilinos
xset
xsetmode
xsetpointer
xsetroot
xsimd
Xtensor 0.15.1 ( #7215 )
2018-02-11 17:56:08 +01:00
xsm
xstdcmap
xtensor
Xtensor 0.15.1 ( #7215 )
2018-02-11 17:56:08 +01:00
xtensor-python
xtensor-python ( #7217 )
2018-02-11 22:21:45 +01:00
xterm
xtl
Xtensor 0.15.1 ( #7215 )
2018-02-11 17:56:08 +01:00
xtrans
xtrap
xts
xvidtune
xvinfo
xwd
xwininfo
xwud
xz
yajl
yaml-cpp
Update checksum for version 0.5.3 of yaml-cpp ( #6924 )
2018-01-13 22:09:36 -06:00
yasm
yorick
z3
zeromq
zfp
zip
zlib
Changed keyword argument 'recurse' to 'recursive'
2018-02-13 02:18:28 -08:00
zoltan
zsh
zstd
