64 lines
3.4 KiB
Python
64 lines
3.4 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RGgbio(RPackage):
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"""Visualization tools for genomic data
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The ggbio package extends and specializes the grammar of graphics for
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biological data. The graphics are designed to answer common scientific
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questions, in particular those often asked of high throughput genomics
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data. All core Bioconductor data structures are supported, where
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appropriate. The package supports detailed views of particular genomic
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regions, as well as genome-wide overviews. Supported overviews include
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ideograms and grand linear views. High-level plots include sequence
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fragment length, edge-linked interval to data view, mismatch pileup, and
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several splicing summaries."""
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homepage = "https://bioconductor.org/packages/ggbio"
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git = "https://git.bioconductor.org/packages/ggbio.git"
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version('1.38.0', commit='c39c51993f419cfc2f094e664477f25f5212a242')
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version('1.32.0', commit='04bd12fbe0b1c5c6b721a5f927e1352765f9bf88')
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version('1.30.0', commit='8b05258b089b06a743352e92058edda06c24cfb7')
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version('1.28.5', commit='594521ca556ef7d97cf4882ecfa54d22c2a2faba')
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version('1.26.1', commit='b4f4c898c92aa1082aa7574f1e5c2a0dae943fbc')
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version('1.24.1', commit='ef04c1bca1330f37152bcc21080cbde94849a094')
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depends_on('r-biocgenerics', type=('build', 'run'))
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depends_on('r-ggplot2@1.0.0:', type=('build', 'run'))
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depends_on('r-gridextra', type=('build', 'run'))
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depends_on('r-scales', type=('build', 'run'))
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depends_on('r-reshape2', type=('build', 'run'))
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depends_on('r-gtable', type=('build', 'run'))
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depends_on('r-hmisc', type=('build', 'run'))
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depends_on('r-biovizbase@1.23.3:', type=('build', 'run'))
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depends_on('r-biovizbase@1.28.2:', when='@1.28.5:', type=('build', 'run'))
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depends_on('r-biovizbase@1.29.2:', when='@1.30.0:', type=('build', 'run'))
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depends_on('r-biobase', type=('build', 'run'))
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depends_on('r-s4vectors@0.13.13:', type=('build', 'run'))
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depends_on('r-iranges', type=('build', 'run'))
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depends_on('r-iranges@2.11.16:', when='@1.26.1:', type=('build', 'run'))
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depends_on('r-genomeinfodb@1.1.3:', type=('build', 'run'))
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depends_on('r-genomicranges@1.21.10:', type=('build', 'run'))
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depends_on('r-genomicranges@1.29.14:', when='@1.26.1:', type=('build', 'run'))
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depends_on('r-summarizedexperiment', type=('build', 'run'))
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depends_on('r-biostrings', type=('build', 'run'))
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depends_on('r-rsamtools@1.17.28:', type=('build', 'run'))
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depends_on('r-genomicalignments@1.1.16:', type=('build', 'run'))
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depends_on('r-bsgenome', type=('build', 'run'))
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depends_on('r-variantannotation@1.11.4:', type=('build', 'run'))
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depends_on('r-rtracklayer@1.25.16:', type=('build', 'run'))
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depends_on('r-genomicfeatures@1.17.13:', type=('build', 'run'))
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depends_on('r-genomicfeatures@1.29.11:', when='@1.26.1:', type=('build', 'run'))
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depends_on('r-organismdbi', type=('build', 'run'))
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depends_on('r-ggally', type=('build', 'run'))
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depends_on('r-ensembldb@1.99.13:', type=('build', 'run'))
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depends_on('r-annotationdbi', type=('build', 'run'))
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depends_on('r-annotationfilter', type=('build', 'run'))
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depends_on('r-rlang', when='@1.28.5:', type=('build', 'run'))
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