47 lines
2.0 KiB
Python
47 lines
2.0 KiB
Python
##############################################################################
|
|
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
|
|
# Produced at the Lawrence Livermore National Laboratory.
|
|
#
|
|
# This file is part of Spack.
|
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
|
# LLNL-CODE-647188
|
|
#
|
|
# For details, see https://github.com/spack/spack
|
|
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
|
|
#
|
|
# This program is free software; you can redistribute it and/or modify
|
|
# it under the terms of the GNU Lesser General Public License (as
|
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
|
#
|
|
# This program is distributed in the hope that it will be useful, but
|
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
|
# conditions of the GNU Lesser General Public License for more details.
|
|
#
|
|
# You should have received a copy of the GNU Lesser General Public
|
|
# License along with this program; if not, write to the Free Software
|
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
|
##############################################################################
|
|
from spack import *
|
|
|
|
|
|
class FastqScreen(Package):
|
|
"""FastQ Screen allows you to screen a library of sequences in FastQ format
|
|
against a set of sequence databases so you can see if the composition of
|
|
the library matches with what you expect."""
|
|
|
|
homepage = "https://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/"
|
|
url = "https://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/fastq_screen_v0.11.2.tar.gz"
|
|
|
|
version('0.11.2', 'ef79f16ee553aaa0ab2fc14ea11e5473')
|
|
|
|
depends_on('perl', type='run')
|
|
depends_on('perl-gd-graph', type='run')
|
|
depends_on('bowtie')
|
|
depends_on('bowtie2')
|
|
depends_on('bwa')
|
|
depends_on('samtools')
|
|
|
|
def install(self, spec, prefix):
|
|
install_tree('.', prefix.bin)
|