37d7b5b199
* Activate environment in container file This PR will ensure that the container recipes will build the spack environment by first activating the environment. * Deactivate environment before environment collection For Singularity, the environment must be deactivated before running the command to collect the environment variables. This is because the environment collection uses `spack env activate`.
93 lines
2.1 KiB
Modula-2
93 lines
2.1 KiB
Modula-2
Bootstrap: docker
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From: {{ build.image }}:{{ build.tag }}
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Stage: build
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%post
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# Create the manifest file for the installation in /opt/spack-environment
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mkdir {{ paths.environment }} && cd {{ paths.environment }}
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cat << EOF > spack.yaml
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{{ manifest }}
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EOF
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# Install all the required software
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. /opt/spack/share/spack/setup-env.sh
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spack env activate .
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spack install
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spack gc -y
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spack env deactivate
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spack env activate --sh -d . >> {{ paths.environment }}/environment_modifications.sh
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{% if strip %}
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# Strip the binaries to reduce the size of the image
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find -L {{ paths.view }}/* -type f -exec readlink -f '{}' \; | \
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xargs file -i | \
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grep 'charset=binary' | \
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grep 'x-executable\|x-archive\|x-sharedlib' | \
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awk -F: '{print $1}' | xargs strip -s
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{% endif %}
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{% if extra_instructions.build %}
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{{ extra_instructions.build }}
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{% endif %}
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{% if apps %}
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{% for application, help_text in apps.items() %}
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%apprun {{ application }}
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exec /opt/view/bin/{{ application }} "$@"
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%apphelp {{ application }}
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{{help_text }}
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{% endfor %}
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{% endif %}
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Bootstrap: docker
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From: {{ run.image }}
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Stage: final
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%files from build
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{{ paths.environment }} /opt
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{{ paths.store }} /opt
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{{ paths.view }} /opt
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{{ paths.environment }}/environment_modifications.sh {{ paths.environment }}/environment_modifications.sh
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%post
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{% if os_packages.list %}
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# Update, install and cleanup of system packages
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{{ os_packages.update }}
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{{ os_packages.install }} {{ os_packages.list | join | replace('\n', ' ') }}
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{{ os_packages.clean }}
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{% endif %}
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# Modify the environment without relying on sourcing shell specific files at startup
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cat {{ paths.environment }}/environment_modifications.sh >> $SINGULARITY_ENVIRONMENT
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{% if extra_instructions.final %}
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{{ extra_instructions.final }}
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{% endif %}
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{% if runscript %}
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%runscript
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{{ runscript }}
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{% endif %}
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{% if startscript %}
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%startscript
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{{ startscript }}
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{% endif %}
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{% if test %}
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%test
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{{ test }}
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{% endif %}
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{% if help %}
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%help
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{{ help }}
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{% endif %}
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{% if labels %}
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%labels
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{% for label, value in labels.items() %}
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{{ label }} {{ value }}
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{% endfor %}
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{% endif %}
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