
- [x] add `concretize.lp`, `spack.yaml`, etc. to licensed files - [x] update all licensed files to say 2013-2021 using `spack license update-copyright-year` - [x] appease mypy with some additions to package.py that needed for oneapi.py
28 lines
939 B
Python
28 lines
939 B
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
|
|
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
#
|
|
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
|
|
from spack import *
|
|
|
|
|
|
class AllpathsLg(AutotoolsPackage):
|
|
"""ALLPATHS-LG is our original short read assembler and it works on both
|
|
small and large (mammalian size) genomes."""
|
|
|
|
homepage = "http://www.broadinstitute.org/software/allpaths-lg/blog/"
|
|
url = "ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/allpathslg-52488.tar.gz"
|
|
|
|
version('52488', sha256='035b49cb21b871a6b111976757d7aee9c2513dd51af04678f33375e620998542')
|
|
|
|
# compiles with gcc 4.7.0 to 4.9.4)
|
|
conflicts('%gcc@:4.6.4,5.1.0:')
|
|
conflicts('%cce')
|
|
conflicts('%apple-clang')
|
|
conflicts('%clang')
|
|
conflicts('%intel')
|
|
conflicts('%nag')
|
|
conflicts('%pgi')
|
|
conflicts('%xl')
|
|
conflicts('%xl_r')
|