33 lines
1.5 KiB
Python
33 lines
1.5 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
|
|
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
#
|
|
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
|
|
from spack import *
|
|
|
|
|
|
class RPathview(RPackage):
|
|
"""Pathview is a tool set for pathway based data integration and
|
|
visualization. It maps and renders a wide variety of biological data on
|
|
relevant pathway graphs. All users need is to supply their data and
|
|
specify the target pathway. Pathview automatically downloads the pathway
|
|
graph data, parses the data file, maps user data to the pathway, and
|
|
render pathway graph with the mapped data. In addition, Pathview also
|
|
seamlessly integrates with pathway and gene set (enrichment) analysis
|
|
tools for large-scale and fully automated analysis."""
|
|
|
|
homepage = "https://www.bioconductor.org/packages/pathview/"
|
|
git = "https://git.bioconductor.org/packages/pathview.git"
|
|
|
|
version('1.16.7', commit='fc560ed15ef7393a73d35e714716cc24dc835339')
|
|
|
|
depends_on('r-keggrest', type=('build', 'run'))
|
|
depends_on('r-png', type=('build', 'run'))
|
|
depends_on('r-annotationdbi', type=('build', 'run'))
|
|
depends_on('r-graph', type=('build', 'run'))
|
|
depends_on('r-rgraphviz', type=('build', 'run'))
|
|
depends_on('r-xml', type=('build', 'run'))
|
|
depends_on('r-kegggraph', type=('build', 'run'))
|
|
depends_on('r-org-hs-eg-db', type=('build', 'run'))
|
|
depends_on('r@3.4.0:3.4.9', when='@1.16.7')
|