54 lines
2.3 KiB
Python
54 lines
2.3 KiB
Python
##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Plink(Package):
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"""PLINK is a free, open-source whole genome association analysis toolset,
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designed to perform a range of basic, large-scale analyses in a
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computationally efficient manner."""
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homepage = "https://www.cog-genomics.org/plink/1.9/"
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version('1.9-beta5', '737545504ae19348a44a05fa69b75c28',
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url='https://github.com/chrchang/plink-ng/archive/b15c19f.tar.gz')
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version('1.07', 'fd0bafeda42151b20534e4f97b0d97df',
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url='http://zzz.bwh.harvard.edu/plink/dist/plink-1.07-x86_64.zip',
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preferred=True)
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depends_on('atlas', when='@1.9-beta5')
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depends_on('netlib-lapack', when='@1.9-beta5')
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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if spec.version == Version('1.07'):
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install('plink', prefix.bin)
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install('gPLINK.jar', prefix.bin)
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if spec.version == Version('1.9-beta5'):
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with working_dir('1.9'):
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first_compile = Executable('./plink_first_compile')
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first_compile()
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install('plink', prefix.bin)
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