a8ccb8e116
- [x] add `concretize.lp`, `spack.yaml`, etc. to licensed files
- [x] update all licensed files to say 2013-2021 using
`spack license update-copyright-year`
- [x] appease mypy with some additions to package.py that needed
for oneapi.py
30 lines
1.1 KiB
Python
30 lines
1.1 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Mixcr(Package):
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"""MiXCR is a universal framework that processes big immunome data from
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raw sequences to quantitated clonotypes. MiXCR efficiently handles
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paired- and single-end reads, considers sequence quality, corrects PCR
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errors and identifies germline hypermutations. The software supports
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both partial- and full-length profiling and employs all available RNA or
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DNA information, including sequences upstream of V and downstream of J
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gene segments."""
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homepage = "https://mixcr.readthedocs.io/en/master/index.html"
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url = "https://github.com/milaboratory/mixcr/releases/download/v3.0.2/mixcr-3.0.2.zip"
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version('3.0.2', sha256='b4dcad985053438d5f5590555f399edfbd8cb514e1b9717620ee0ad0b5eb6b33')
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depends_on('java@8:')
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def install(self, spec, prefix):
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install_tree('.', prefix)
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def setup_run_environment(self, env):
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env.prepend_path('PATH', self.prefix)
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