..
abinit
abyss
accfft
ack
activeharmony
adept-utils
adios
ADIOS 1.13.1 & SZ 1.4.12.3 ( #7808 )
2018-04-18 10:52:13 -05:00
adios2
adlbx
adol-c
adol-c: add boost optional dependency ( #7905 )
2018-04-26 08:42:03 -05:00
albert
alglib
allinea-forge
allinea-reports
allpaths-lg
alquimia
alsa-lib
amg
amg2013
amp
ampliconnoise
amrex
andi
angsd
ant
antlr
ants
ape
apex
applewmproto
appres
apr
apr-util
aragorn
ARAGORN: Create new package ( #7875 )
2018-04-23 16:51:42 -05:00
archer
argp-standalone
argtable
arlecore
armadillo
arpack-ng
ascent
asciidoc
aspa
aspcud
aspell
add patch to get aspell to build on OSX ( #7919 )
2018-04-26 15:19:52 -05:00
aspell6-de
aspell6-en
aspell6-es
assimp
astra
astral
astyle
atk
atlas
atom-dft
atompaw
atop
augustus
autoconf
autodock-vina
autogen
automaded
automake
Added the latest versions of a few packages ( #7910 )
2018-04-26 14:46:45 +02:00
bamtools
bamutil
barrnap
bash
bash-completion
bats
bazel
bbcp
bbmap
bc
bcftools
Bump samtools, hstlib and bcftools to version 1.8. ( #8020 )
2018-05-04 16:27:54 -05:00
bcl2fastq2
bcl2fastq2: package update ( #7794 )
2018-04-18 10:11:44 -05:00
bdftopcf
bdw-gc
bear
beast1
beast2
bedops
bedops: Create new package ( #7956 )
2018-05-02 08:14:00 -05:00
bedtools2
beforelight
benchmark
Updates to Google Benchmark package: ( #8056 )
2018-05-08 13:04:19 -05:00
berkeley-db
bertini
bib2xhtml
bigreqsproto
binutils
bioawk
biopieces
bismark
bismark: Create new package ( #7795 )
2018-04-17 14:45:10 -05:00
bison
bitmap
blast-plus
blat
blaze
bliss
blitz
bmake
bml
bohrium
bookleaf-cpp
Added BookLeaf_Cpp and Typhon packages. ( #7969 )
2018-05-02 10:45:30 -05:00
boost
Add boost 1.67.0 ( #7889 )
2018-04-25 21:00:22 -05:00
boostmplcartesianproduct
bowtie
bowtie2
boxlib
bpp-core
bpp-phyl
bpp-seq
bpp-suite
bracken
braker
branson
breakdancer
breseq
brigand
bsseeker2
bucky
bumpversion
Add package for "bumpversion" ( #8078 )
2018-05-12 18:37:10 -05:00
busco
Use GitLab's API endpoint for fetching a git snapshot. ( #7881 )
2018-04-26 16:40:11 -05:00
butter
bwa
byobu
bzip2
c-blosc
c-lime
caffe
cairo
caliper
callpath
candle-benchmarks
cantera
canu
cap3
cares
cask
casper
catalyst
catch
cbench
cblas
cbtf
Simple updates to the Krell Institute OpenSpeedShop and CBTF components build package files. ( #7812 )
2018-04-18 14:05:53 -05:00
cbtf-argonavis
Simple updates to the Krell Institute OpenSpeedShop and CBTF components build package files. ( #7812 )
2018-04-18 14:05:53 -05:00
cbtf-argonavis-gui
Simple updates to the Krell Institute OpenSpeedShop and CBTF components build package files. ( #7812 )
2018-04-18 14:05:53 -05:00
cbtf-krell
Simple updates to the Krell Institute OpenSpeedShop and CBTF components build package files. ( #7812 )
2018-04-18 14:05:53 -05:00
cbtf-lanl
ccache
cctools
cdbfasta
cdd
cddlib
cdhit
cdo
ceed
cereal
cfitsio
cgal
cgm
cgns
charm
check
chlorop
chombo
cistem
cityhash
clamr
cleaveland4
cleverleaf
clfft
clhep
clingo
cloc
cloog
cloverleaf
cloverleaf3d
clustalo
clustalw
cmake
cmake: update version ( #7802 )
2018-04-17 17:26:03 -05:00
cmocka
cmor
cnmem
cnpy
cntk
cntk1bitsgd
codar-cheetah
coevp
cohmm
coinhsl
colm
New colm, ragel packages ( #7867 )
2018-04-23 10:50:58 -05:00
colordiff
comd
compiz
compositeproto
conduit
constype
converge
coreutils
corset
cosmomc
cosp2
cp2k
cppad
cppcheck
add variant htmlreport to package cppcheck ( #7824 )
2018-04-21 10:26:37 -05:00
cpprestsdk
cppunit
cppzmq
cpu-features
cpuinfo
Add a new package: cpuinfo. ( #7895 )
2018-04-25 10:04:45 -05:00
cram
cryptopp
cscope
csdp
ctffind
cub
cube
cuda
cuda-memtest
cudnn
cufflinks
cups
curl
self has no attribute named satisfies. ( #7826 )
2018-04-19 12:43:12 -05:00
cvs
czmq
dakota
daligner
damageproto
damselfly
darshan-runtime
darshan-util
dash
datamash
dataspaces
dbus
dealii
dealii: add 9.0.0 ( #8096 )
2018-05-11 21:59:25 -05:00
deconseq-standalone
dejagnu
delly2
denovogear
dia
dialign-tx
diamond
DIAMOND: Add version 0.9.20 ( #7847 )
2018-04-21 09:57:06 -05:00
diffsplice
direnv
discovar
discovardenovo
dislin
shoremap: new package ( #7343 )
2018-05-12 08:22:45 +02:00
dlpack
dmlc-core
dmxproto
docbook-xml
docbook-xsl
dos2unix
double-conversion
doxygen
dri2proto
dri3proto
dsdp
dsrc
dtcmp
dyninst
ea-utils
easybuild
ebms
eccodes
ecp-proxy-apps
ed
editres
eigen
elemental
elfutils
elk
elpa
emacs
emboss
encodings
environment-modules
eospac
Patch eospac package to allow compilation with %clang. ( #7928 )
2018-04-29 18:40:27 -06:00
es
esmf
espresso
essl
ethminer
etsf-io
everytrace
Everytrace: update ( #7995 )
2018-05-03 17:00:21 -05:00
everytrace-example
evieext
exabayes
examinimd
exampm
exasp2
exmcutils
exodusii
exonerate
expat
expect
express
extrae
exuberant-ctags
f90cache
fabtests
fabtests: new package ( #7837 )
2018-04-25 10:29:29 -05:00
falcon
farmhash
fastjar
fastmath
fastme
fastphase
fastq-screen
fastqc
fastqvalidator
fasttree
fastx-toolkit
fenics
fermi
fermikit
ferret
ffmpeg
fftw
fimpute
findutils
fio
fish
fixesproto
flac
flang
flann
flash
flecsale
flecsi
flex
flint
flit
fltk
flux
fluxbox
fmt
foam-extend
folly
font-adobe-75dpi
font-adobe-100dpi
font-adobe-utopia-75dpi
font-adobe-utopia-100dpi
font-adobe-utopia-type1
font-alias
font-arabic-misc
font-bh-75dpi
font-bh-100dpi
font-bh-lucidatypewriter-75dpi
font-bh-lucidatypewriter-100dpi
font-bh-ttf
font-bh-type1
font-bitstream-75dpi
font-bitstream-100dpi
font-bitstream-speedo
font-bitstream-type1
font-cronyx-cyrillic
font-cursor-misc
font-daewoo-misc
font-dec-misc
font-ibm-type1
font-isas-misc
font-jis-misc
font-micro-misc
font-misc-cyrillic
font-misc-ethiopic
font-misc-meltho
font-misc-misc
font-mutt-misc
font-schumacher-misc
font-screen-cyrillic
font-sony-misc
font-sun-misc
font-util
font-winitzki-cyrillic
font-xfree86-type1
fontcacheproto
fontconfig
fontsproto
fonttosfnt
fp16
Add a new package: fp16. ( #7896 )
2018-04-25 07:30:07 -05:00
fpc
fr-hit
freebayes
freeglut
freeglut: new package ( #7820 )
2018-04-18 19:49:42 -05:00
freetype
freetype: adding subdir to cpath for deps ( #7818 )
2018-04-19 09:00:49 -05:00
fseq
fsl
fslsfonts
fstobdf
funhpc
gapbs
gapcloser
gapfiller
gasnet
gatk
Bump gatk version to 4.0.4.0. ( #7985 )
2018-05-03 10:08:48 -05:00
gaussian
gawk
gblocks
gcc
macOS-specific patch no longer applies to GCC 8 ( #8029 )
2018-05-06 09:28:33 -05:00
gccmakedep
gccxml
gconf
gcta
gdal
gdal: update ( #8008 )
2018-05-03 22:55:31 -05:00
gdb
Add gdb@8.1; add optional lzma dependency for debug information support ( #8068 )
2018-05-08 21:08:39 -05:00
gdbm
Package 'gdbm': do not set CC. ( #7912 )
2018-04-26 08:44:17 -05:00
gdk-pixbuf
geant4
gearshifft
gemmlowp
genemark-et
genomefinisher
genomefinisher: Create new package ( #7989 )
2018-05-03 13:11:00 -05:00
genometools
geopm
geos
gettext
gflags
ghost
ghostscript
ghostscript-fonts
giflib
git
Added the latest versions of a few packages ( #7910 )
2018-04-26 14:46:45 +02:00
git-imerge
git-lfs
gl2ps
glew
glew: adding gl dependency ( #7817 )
2018-04-18 17:58:45 -05:00
glfmultiples
glib
glimmer
glm
global
globalarrays
globus-toolkit
glog
gloo
Add a new package: gloo. ( #7894 )
2018-04-25 10:05:16 -05:00
glpk
glproto
glvis
gmake
gmap-gsnap
gmime
gmp
gmp: update ( #7999 )
2018-05-03 16:53:19 -05:00
gmsh
gmsh: add netgen and tetgen ( #8060 )
2018-05-11 14:22:12 +02:00
gnat
gnu-prolog
gnupg
gnuplot
gnuplot: add 5.2.2 ( #7831 )
2018-04-21 10:24:36 -05:00
gnutls
go
go: Update to 1.10.2 ( #7982 )
2018-05-03 12:14:52 +02:00
go-bootstrap
gobject-introspection
googletest
googletest: add variant to enable/disable threads ( #8052 )
2018-05-08 12:42:57 -05:00
gotcha
gource
gperf
gperftools
grackle
Add grackle 3.1 ( #7805 )
2018-04-18 07:23:09 -05:00
gradle
grandr
graph500
graphlib
graphmap
graphviz
grib-api
groff
gromacs
gsl
gslib
gtkorvo-atl
gtkorvo-cercs-env
gtkorvo-dill
gtkorvo-enet
gtkplus
gts
guidance
guile
gurobi
h5hut
h5part
h5utils
h5z-zfp
hacckernels
Use GitLab's API endpoint for fetching a git snapshot. ( #7881 )
2018-04-26 16:40:11 -05:00
hadoop
Added the latest versions of a few packages ( #7910 )
2018-04-26 14:46:45 +02:00
hapcut2
hapdip
haploview
harfbuzz
harminv
hdf
hdf5
hdf5-blosc
help2man
hepmc
heppdt
hic-pro
Hic-Pro: fix a typo and replace hard-coded version. ( #8022 )
2018-05-04 10:56:04 -05:00
highfive
highwayhash
hiop
hisat2
hmmer
hoomd-blue
hpccg
hpctoolkit
hpctoolkit-externals
hpgmg
hpl
hpx
hpx5
hsakmt
hstr
htop
htslib
Bump samtools, hstlib and bcftools to version 1.8. ( #8020 )
2018-05-04 16:27:54 -05:00
httpie
hub
hunspell
hwloc
hybpiper
hydra
hypre
petsc and slepc: add 3.9.0; hypre: add 2.14 (needed by petsc) ( #7877 )
2018-04-24 07:10:46 -05:00
i3
ibmisc
iceauth
icedtea
icet
Use GitLab's API endpoint for fetching a git snapshot. ( #7881 )
2018-04-26 16:40:11 -05:00
ico
icu4c
id3lib
idba
igraph
igv
igvtools
ilmbase
image-magick
imake
imp
A new pacakge: IMP. ( #7859 )
2018-04-21 13:08:44 -05:00
impute2
infernal
inputproto
intel
intel-daal
intel-gpu-tools
intel-ipp
intel-mkl
intel-mkl-dnn
intel-mpi
intel-parallel-studio
intel-tbb
intel-xed
intltool
intltool requires patching for newer perl versions ( #8061 )
2018-05-08 17:53:50 -05:00
ior
iozone
ipopt
isaac
isaac-server
isl
itstool
itsx
jags
jansson
jasper
jbigkit
jchronoss
jdk
Added the latest versions of a few packages ( #7910 )
2018-04-26 14:46:45 +02:00
jellyfish
jellyfish: fixing url for v2 package retrieval ( #7849 )
2018-04-21 09:56:38 -05:00
jemalloc
jmol
jq
json-c
json-cwx
json-glib
jsoncpp
judy
julia
k8
kahip
kaks-calculator
kaldi
kallisto
kbproto
kdiff3
kealib
kentutils
kmergenie
kokkos
Added OpenMP Variant for Kokkos ( #7902 )
2018-04-25 10:50:58 -05:00
kraken
krb5
Add package wireshark and dependencies ( #8024 )
2018-05-06 09:32:06 -05:00
krims
kripke
kvasir-mpl
laghos
lammps
last
latte
launchmon
lazyten
lbann
opencv updates for lbann ( #6502 )
2018-05-08 17:55:12 -07:00
lbxproxy
lcals
lcms
ldc
ldc-bootstrap
legion
leveldb
lftp
libaec
Use GitLab's API endpoint for fetching a git snapshot. ( #7881 )
2018-04-26 16:40:11 -05:00
libaio
libapplewm
libarchive
libassuan
libatomic-ops
libbeagle
libbsd
libbson
libcanberra
libcap
libceed
libcerf
libcheck
libcint
Add libcint version 3.0.12 ( #7972 )
2018-05-02 10:44:58 -05:00
libcircle
libconfig
libcroco
libctl
libdivsufsort
libdmx
libdrm
libdwarf
libedit
libelf
libemos
libepoxy
libev
libevent
libevpath
libfabric
Libfabric: updating fabrics & adding deps ( #7838 )
2018-04-25 10:35:36 -05:00
libffi
libffs
libfontenc
libfs
libgcrypt
libgd
libgit2
libgpg-error
libgpuarray
libgridxc
libgtextutils
libharu
libhio
libice
libiconv
libint
libjpeg
libjpeg-turbo
libksba
liblbxutil
liblockfile
libmatheval
libmaxminddb
Add package wireshark and dependencies ( #8024 )
2018-05-06 09:32:06 -05:00
libmesh
libmng
libmongoc
libmonitor
libnbc
libnl
libnl: new package ( #7833 )
2018-04-25 10:33:01 -05:00
libogg
liboldx
libpcap
libpciaccess
libpfm4
libpipeline
libpng
libpsl
libpthread-stubs
libquo
librom
libshm
A new library: libshm. ( #8028 )
2018-05-05 17:16:48 -05:00
libsigsegv
libsm
libsodium
libspatialindex
libsplash
libssh
add variants and conflicts for curl ( #7804 )
2018-04-19 07:23:16 -05:00
libssh2
libsvm
libszip
libtermkey
libtiff
libtool
libunistring
libunwind
libuuid
libuv
libvorbis
libvterm
libwebsockets
libwindowswm
libx11
libxau
libxaw
libxaw3d
libxc
libxcb
libxcomposite
libxcursor
libxdamage
libxdmcp
libxevie
libxext
libxfixes
libxfont
libxfont2
libxfontcache
libxft
libxi
libxinerama
libxkbcommon
libxkbfile
libxkbui
libxml2
libxml2: adding subdir to cpath for deps ( #7819 )
2018-04-19 09:01:11 -05:00
libxmu
libxp
libxpm
libxpresent
libxprintapputil
libxprintutil
libxrandr
libxrender
libxres
libxscrnsaver
libxshmfence
libxslt
libxsmm
libxstream
libxt
shoremap: new package ( #7343 )
2018-05-12 08:22:45 +02:00
libxtrap
libxtst
libxv
libxvmc
libxxf86dga
libxxf86misc
libxxf86vm
libyogrt
libzip
likwid
linkphase3
linux-headers
listres
llvm
llvm: replace @when with internal check in @run_before ( #8092 )
2018-05-11 12:32:26 -07:00
llvm-openmp-ompt
lmdb
lmod
Added the latest versions of a few packages ( #7910 )
2018-04-26 14:46:45 +02:00
lndir
log4cplus
log4cxx
loki
A new package: loki. ( #7908 )
2018-04-26 08:37:03 -05:00
lrslib
lrzip
lsof
ltrace
lua
lua-bitlib
lua-jit
lua-lpeg
lua-luafilesystem
lua-luaposix
lua-mpack
luit
lulesh
lumpy-sv
lwgrp
lwm2
lz4
lzma
lzo
m4
macsio
mad-numdiff
mafft
magics
magma
makedepend
mallocmc
man-db
manta
manta: Create new package ( #8043 )
2018-05-07 17:22:43 -05:00
maq
mariadb
masa
masurca
masurca: new version ( #8094 )
2018-05-11 14:43:21 -05:00
matio
matlab
maven
maverick
mawk
mbedtls
mc
mcl
mdtest
meep
mefit
memaxes
meme
meraculous
mercurial
mesa
mesa-glu
meshkit
meson
mesquite
metabat
metabat: Create new package ( #7991 )
2018-05-06 10:56:03 -05:00
metaphysicl
metasv
metis
mfem
mfem: fix concretization ( #7923 )
2018-04-28 07:16:43 -05:00
microbiomeutil
minced
mindthegap
miniaero
miniamr
miniasm
miniconda2
miniconda3
minife
minighost
minigmg
minimap2
minimd
miniqmc
minisign
minismac2d
minitri
minixyce
mira
mirdeep
mitofates
mitos
mkfontdir
mkfontscale
mlhka
moab
modern-wheel
molcas
mono
Add a new version 5.4.1.7 for mono. ( #7866 )
2018-04-23 07:31:29 -05:00
mosh
mothur
motif
motioncor2
mozjs
mpark-variant
mpc
mpe2
mpest
mpfr
mpibash
mpiblast
mpich
mpifileutils
mpifileutils: roll back to dtcmp v1.0.3, add option to build master branch ( #7949 )
2018-04-30 18:46:17 -05:00
mpileaks
mpip
mpir
mpix-launch-swift
mrbayes
mrnet
mrtrix3
mscgen
msgpack-c
mshadow
multitail
multiverso
mummer
mumps
munge
muparser
muscle
muse
muster
mvapich2
mvapich2: add 2.3rc2 ( #7976 )
2018-05-02 14:23:32 -05:00
mxml
mxnet
nag
nalu
namd
nano
nanoflann
nanopb
A new package: nanopb. ( #7981 )
2018-05-03 10:12:37 -05:00
nasm
nauty
ncbi-rmblastn
nccl
nccmp
ncdu
ncftp
ncl
nco
ncurses
ncview
ndiff
nek5000
nekbone
nekcem
neovim
netcdf
netcdf: added version 4.6.1 ( #8098 )
2018-05-12 17:24:59 +02:00
netcdf-cxx
netcdf-cxx4
netcdf-fortran
netgauge
netgen
gmsh: add netgen and tetgen ( #8060 )
2018-05-11 14:22:12 +02:00
netlib-lapack
netlib-scalapack
netlib-xblas
nettle
neuron
nextflow
nfft
nfft: added version 3.4.1 Moved package to github ( #8099 )
2018-05-12 17:25:28 +02:00
nghttp2
nginx
ngmlr
ninja
ninja-fortran
nlohmann-json
nlopt
nmap
nnvm
node-js
notmuch
npb
npm
npth
nspr
numactl
numdiff
nut
nwchem
ocaml
occa
oce
oclint
oclock
octave
octave-optim
octave-splines
octave-struct
octopus
of-adios-write
omega-h
omega-h: new package ( #7861 )
2018-04-22 17:26:52 -05:00
ompss
ompt-openmp
oniguruma
ont-albacore
opa-psm2
opam
opari2
openbabel
openblas
opencoarrays
opencv
opencv updates for lbann ( #6502 )
2018-05-08 17:55:12 -07:00
openexr
openfast
openfoam-com
openfoam-org
openfst
opengl
openglu
openjpeg
openmc
openmc is not a proxy ( #7968 )
2018-05-02 06:48:16 -06:00
openmpi
openmpi: new version ( #8055 )
2018-05-08 12:35:44 -05:00
opennurbs
openpmd-api
openPMD-api ( #7765 )
2018-04-19 09:04:07 -05:00
openscenegraph
openslide
A new package: openslide. ( #7906 )
2018-04-26 07:17:15 +02:00
openspeedshop
Simple updates to the Krell Institute OpenSpeedShop and CBTF components build package files. ( #7812 )
2018-04-18 14:05:53 -05:00
openssh
openssl
opium
opus
orfm
orthofinder
orthomcl
osu-micro-benchmarks
otf
otf2
p4est
p7zip
pacbio-daligner
pacbio-damasker
pacbio-dazz-db
pacbio-dextractor
pagit
pagmo
paml
panda
pandaseq
pango
papi
papyrus
a new package: papyrus. ( #8023 )
2018-05-04 18:51:37 -05:00
paradiseo
parallel
parallel-netcdf
paraver
paraview
parmetis
parmgridgen
parsimonator
parsplice
Use GitLab's API endpoint for fetching a git snapshot. ( #7881 )
2018-04-26 16:40:11 -05:00
partitionfinder
patch
patchelf
pathfinder
pax-utils
pbmpi
pcma
pcre
pcre2
pdf2svg
new package: py-weblogo ( #7886 )
2018-04-24 19:31:37 -07:00
pdsh
pdt
pegtl
pennant
percept
perl
perl: add 5.26.2 ( #7984 )
2018-05-07 13:40:32 -05:00
perl-algorithm-diff
perl-app-cmd
perl-array-utils
perl-b-hooks-endofscope
perl-bio-perl
perl-bit-vector
perl-cairo
perl-capture-tiny
perl-carp-clan
perl-class-data-inheritable
perl-class-inspector
perl-class-load
perl-class-load-xs
perl-contextual-return
perl-cpan-meta-check
perl-data-optlist
perl-data-stag
perl-dbd-mysql
perl-dbfile
perl-dbi
perl-devel-cycle
perl-devel-globaldestruction
perl-devel-overloadinfo
perl-devel-stacktrace
perl-digest-md5
perl-dist-checkconflicts
perl-encode-locale
perl-eval-closure
perl-exception-class
perl-exporter-tiny
perl-extutils-depends
perl-extutils-makemaker
perl-extutils-pkgconfig
perl-extutils-pkgconfig: Add pkg-config dependency ( #8045 )
2018-05-09 13:10:36 -05:00
perl-file-copy-recursive
perl-file-listing
perl-file-pushd
perl-file-sharedir-install
perl-file-slurp-tiny
perl-file-slurper
perl-file-which
perl-font-ttf
perl-gd
perl-gd-graph
perl-gd-text
perl-graph
perl-graph-readwrite
perl-html-parser
perl-html-tagset
perl-http-cookies
perl-http-daemon
perl-http-date
perl-http-message
perl-http-negotiate
perl-inline
perl-inline-c
perl-intervaltree
perl-io-html
perl-io-sessiondata
perl-io-socket-ssl
perl-io-string
perl-json
perl-libwww-perl
py-mg-rast-tools: Create new package and its dependencies. ( #7816 )
2018-04-21 10:28:44 -05:00
perl-list-moreutils
perl-log-log4perl
perl-lwp
perl-lwp-mediatypes
perl-lwp-protocol-https
perl-math-cdf
perl-math-matrixreal
perl-module-build
perl-module-implementation
perl-module-runtime
perl-module-runtime-conflicts
perl-moose
perl-mozilla-ca
perl-mro-compat
perl-namespace-clean
perl-net-http
perl-net-scp-expect
perl-net-ssleay
perl-package-deprecationmanager
perl-package-stash
perl-package-stash-xs
perl-padwalker
perl-parallel-forkmanager
perl-params-util
perl-parse-recdescent
perl-pdf-api2
perl-pegex
perl-perlio-gzip
perl-perlio-utf8-strict
perl-soap-lite
perl-star-fusion
perl-statistics-descriptive
perl-statistics-pca
perl-statistics-pca: Create new package ( #7796 )
2018-04-17 13:30:12 -05:00
perl-sub-exporter
perl-sub-exporter-progressive
perl-sub-identify
perl-sub-install
perl-sub-name
perl-sub-uplevel
perl-svg
perl-swissknife
perl-task-weaken
perl-term-readkey
perl-test-cleannamespaces
perl-test-deep
perl-test-differences
perl-test-exception
perl-test-fatal
perl-test-memory-cycle
perl-test-most
perl-test-needs
perl-test-requires
perl-test-requiresinternet
perl-test-warn
perl-test-warnings
perl-text-csv
perl-text-diff
perl-text-simpletable
perl-text-unidecode
perl-time-hires
perl-time-piece
perl-try-tiny
perl-uri
perl-uri-escape
perl-version
perl-want
perl-www-robotrules
perl-xml-libxml
perl-xml-parser
perl-xml-parser-lite
perl-xml-simple
perl-yaml-libyaml
petsc
petsc: specify number of processors used for test case ( #8015 )
2018-05-10 10:49:18 -07:00
pexsi
pfft
pflotran
pfunit
pfunit: update ( #7994 )
2018-05-03 17:02:20 -05:00
pgdspider
pgi
Bump pgi to 18.4. ( #7980 )
2018-05-03 10:12:17 -05:00
phantompeakqualtools
phasta
phist
phylip
picard
Added the latest versions of a few packages ( #7910 )
2018-04-26 14:46:45 +02:00
pidx
pigz
pilon
pindel
piranha
pism
pism: new package ( #8010 )
2018-05-03 22:54:00 -05:00
pixman
Add patch ( #8034 )
2018-05-07 09:51:27 -05:00
pkg-config
pkgconf
pkgconf: use alpine linux mirror to avoid ssl error ( #8039 )
2018-05-07 10:46:58 -06:00
planck-likelihood
plasma
plink
plink: new source version 1.9-beta5 ( #8076 )
2018-05-12 18:38:22 -05:00
plumed
pmgr-collective
pmix
pmix: add 1.2.5 and 2.0.3 bug fix releases ( #8097 )
2018-05-11 21:58:29 -05:00
pnfft
pngwriter
pnmpi
poamsa
pocl
polymake
poppler
new package: py-weblogo ( #7886 )
2018-04-24 19:31:37 -07:00
porta
portage
postgresql
ppl
prank
presentproto
preseq
price
primer3
prinseq-lite
prinseq-lite: Create new package ( #7873 )
2018-04-23 16:11:27 -05:00
printproto
probconsrna
prodigal
proj
protobuf
Add 3.5.2; Add optional cpp implementation enable for py-protobuf ( #8069 )
2018-05-09 20:52:39 -05:00
proxymngr
pruners-ninja
ps-lite
psi4
psm
psm: new package ( #7834 )
2018-04-25 10:34:31 -05:00
psmc
psmc: new package ( #7773 )
2018-04-17 13:30:30 -05:00
pstreams
pugixml
pumi
pvm
py-3to2
py-4suite-xml
py-abipy
py-adios
py-affine
py-alabaster
py-apache-libcloud
py-apipkg
py-appdirs
py-appnope
py-apscheduler
py-argcomplete
py-argparse
py-ase
py-asn1crypto
py-astroid
py-astropy
py-attrs
py-autopep8
py-babel
py-backports-abc
py-backports-functools-lru-cache
py-backports-shutil-get-terminal-size
py-backports-ssl-match-hostname
py-basemap
py-bcbio-gff
py-beautifulsoup4
py-binwalk
py-biom-format
py-biopython
py-bitarray
py-bitstring
py-bleach
py-blessings
py-bokeh
py-boltons
py-bottleneck
py-breakseq2
py-brian
py-brian2
py-bsddb3
py-bsddb3: update ( #8006 )
2018-05-03 19:20:14 -05:00
py-bx-python
py-cclib
py-cdat-lite
py-cdo
py-certifi
py-cffi
py-chardet
py-checkm-genome
py-click
py-cligj
py-cnvkit
Py cnvkit: updating dependencies ( #8057 )
2018-05-08 17:54:15 -05:00
py-cogent
py-colorama
py-colormath
py-configparser
py-counter
py-coverage
py-cpuinfo
py-crispresso
py-crispresso: Create new package ( #7990 )
2018-05-03 13:09:59 -05:00
py-crossmap
py-cryptography
py-csvkit
py-current
py-cutadapt
py-cvxopt
py-cycler
py-cython
py-cython: update ( #8005 )
2018-05-03 16:46:15 -05:00
py-dask
py-dateutil
py-dbf
py-decorator
py-deeptools
py-dendropy
py-dev
py-dill
py-discover
py-dlcpar
py-dlcpar: Add package description ( #8032 )
2018-05-07 06:44:16 -05:00
py-docutils
py-doxypy
py-doxypypy
py-dryscrape
py-dxchange
py-dxfile
py-easybuild-easyblocks
py-easybuild-easyconfigs
py-easybuild-framework
py-edffile
py-editdistance
py-elasticsearch
py-elephant
py-emcee
py-entrypoints
py-enum34
py-epydoc
py-espresso
py-espressopp
py-et-xmlfile
py-eventlet
py-execnet
py-fastaindex
py-fasteners
py-faststructure
py-fiscalyear
py-flake8
py-flask
py-flask-compress
py-flask-socketio
py-flexx
py-fparser
py-funcsigs
py-functools32
py-future
py-futures
py-gdbgui
py-genders
py-genshi
py-gevent
py-git2
py-git-review
py-gnuplot
py-goatools
py-gpaw
py-greenlet
py-griddataformats
py-guidata
py-guiqwt
py-h5py
py-html2text
py-html5lib
py-htseq
py-httpbin
py-hypothesis
py-idna
py-igraph
py-illumina-utils
py-imagesize
py-iminuit
py-importlib
py-ipaddress
py-ipdb
py-ipykernel
py-ipython
py-ipython-genutils
py-ipywidgets
py-isort
py-itsdangerous
py-jdcal
py-jedi
py-jinja2
py-joblib
py-jpype
py-jsonschema
py-junit-xml
py-jupyter-client
py-jupyter-console
py-jupyter-core
py-jupyter-notebook
py-keras
py-kiwisolver
py-latexcodec
py-lazy
py-lazy-object-proxy
py-lazyarray
py-libconf
py-libensemble
py-line-profiler
py-linecache2
py-lit
py-llvmlite
py-lmfit
py-localcider
py-lockfile
py-logilab-common
py-lrudict
py-lxml
py-lzstring
py-macholib
py-machotools
py-macs2
py-maestrowf
py-mako
py-mappy
py-markdown
py-markupsafe
py-matplotlib
py-mccabe
py-mdanalysis
py-meep
py-memory-profiler
py-methylcode
py-mg-rast-tools
py-mg-rast-tools: Create new package and its dependencies. ( #7816 )
2018-04-21 10:28:44 -05:00
py-misopy
py-mistune
py-mock
py-moltemplate
py-mongo
py-monotonic
py-monty
py-more-itertools
py-more-itertools: new package ( #8004 )
2018-05-04 16:27:14 -05:00
py-mpi4py
py-mpmath
py-multiprocess
py-multiqc
py-mx
py-mxnet
py-myhdl
py-mysqldb1
py-natsort
py-nbconvert
py-nbformat
py-neo
py-nestle
py-netcdf4
py-netifaces
py-networkx
py-nose
py-nosexcover
py-numba
py-numexpr
py-numpy
py-numpy: update ( #8003 )
2018-05-03 22:53:41 -05:00
py-numpydoc
py-olefile
py-ont-fast5-api
py-openpmd-validator
py-openpyxl
py-openslide-python
A new package: py-openslide-python. ( #7907 )
2018-05-03 08:37:52 -05:00
py-ordereddict
py-oset
py-packaging
py-palettable
py-pandas
py-paramiko
py-pathlib2
py-pathos
py-pathspec
py-patsy
py-pbr
py-perf
py-performance
py-periodictable
py-petsc4py
py-pexpect
py-phonopy
py-pickleshare
py-pil
py-pillow
py-pip
py-pipits
py-pkgconfig
py-plotly
py-ply
py-pmw
py-poster
py-mg-rast-tools: Create new package and its dependencies. ( #7816 )
2018-04-21 10:28:44 -05:00
py-pox
py-ppft
py-prettytable
py-proj
py-prompt-toolkit
py-protobuf
Add 3.5.2; Add optional cpp implementation enable for py-protobuf ( #8069 )
2018-05-09 20:52:39 -05:00
py-psutil
py-psyclone
py-ptyprocess
py-pudb
py-py
py-py2bit
py-py2cairo
py-py2neo
py-py4j
py-pyani
py-pyasn1
py-pybedtools
py-pybigwig
py-pybind11
pybind11: v2.2.3 ( #8051 )
2018-05-08 12:43:38 -05:00
py-pybtex
py-pybtex-docutils
py-pychecker
py-pycodestyle
py-pycparser
py-pycrypto
py-pycurl
py-pydatalog
py-pydispatcher
py-pydot
py-pyelftools
py-pyfaidx
py-pyfasta
py-pyfftw
py-pyflakes
py-pygdbmi
py-pygments
py-pygobject
py-pygpu
py-pygtk
py-pylint
py-pymatgen
py-pyminifier
py-pymol
py-pymol: new package ( #7823 )
2018-04-21 10:28:09 -05:00
py-pympler
py-pynn
py-pypar
py-pyparsing
py-pypeflow
py-pyprof2html
py-pyqt
py-pyrad
py-pysam
Bump pysam to 0.14.1. ( #7988 )
2018-05-04 22:11:26 -05:00
py-pyscaf
py-pyserial
py-pyside
py-pyside: update ( #8002 )
2018-05-03 16:50:55 -05:00
py-pysocks
py-pysqlite
py-pysqlite: Create new package ( #8042 )
2018-05-07 13:42:24 -05:00
py-pytables
py-pytest
py-pytest-cov
py-pytest-flake8
py-pytest-httpbin
py-pytest-mock
py-pytest-runner
py-pytest-xdist
py-python-daemon
py-python-engineio
py-python-gitlab
py-python-levenshtein
py-python-socketio
py-pythonqwt
py-pytz
py-pyutilib
py-pyvcf
py-pywavelets
py-pyyaml
py-qtawesome
py-qtconsole
py-qtpy
py-quantities
py-quast
py-radical-utils
py-ranger
py-rasterio
py-readme-renderer
py-regex
py-reportlab
py-requests
py-requests-toolbelt
py-mg-rast-tools: Create new package and its dependencies. ( #7816 )
2018-04-21 10:28:44 -05:00
py-restview
py-rope
py-rpy2
py-rsa
py-rseqc
py-rtree
py-saga-python
py-scandir
py-scientificpython
py-scikit-image
py-scikit-learn
py-scipy
py-numpy: update ( #8003 )
2018-05-03 22:53:41 -05:00
py-seaborn
py-setuptools
py-setuptools-git
py-setuptools-scm
py-sfepy
py-sh
py-shiboken
py-simplegeneric
py-simplejson
py-singledispatch
py-sip
py-six
py-slepc4py
py-slurm-pipeline
py-sncosmo
py-snowballstemmer
py-snuggs
py-spectra
py-spefile
py-spglib
py-sphinx
sphinx: Updated to v1.7.4 ( #7977 )
2018-05-02 14:23:02 -05:00
py-sphinx-bootstrap-theme
py-sphinx-rtd-theme
py-sphinxcontrib-bibtex
py-sphinxcontrib-programoutput
py-sphinxcontrib-websupport
py-spyder
py-spykeutils
py-sqlalchemy
py-statsmodels
py-stevedore
py-storm
py-subprocess32
py-symengine
py-symfit
py-sympy
py-tabulate
py-tappy
py-terminado
py-testinfra
py-testinfra: Create new package ( #7883 )
2018-04-25 10:29:45 -05:00
py-tetoolkit
py-theano
py-tifffile
py-toml
py-tomopy
py-tornado
py-tqdm
py-traceback2
py-traitlets
py-tuiview
py-twisted
py-typing
py-tzlocal
py-udunits
py-udunits: New package ( #7998 )
2018-05-05 17:33:44 -05:00
py-umi-tools
py-unittest2
py-unittest2py3k
py-urllib3
py-urwid
py-vcversioner
py-virtualenv
py-virtualenv-clone
py-virtualenvwrapper
py-vmd-python
py-vsc-base
py-vsc-install
py-wcsaxes
py-wcwidth
py-webkit-server
py-weblogo
new package: py-weblogo ( #7886 )
2018-04-24 19:31:37 -07:00
py-werkzeug
py-wheel
py-widgetsnbextension
py-wrapt
py-xarray
py-xattr
py-xlrd
py-xlsxwriter
py-xmlrunner
py-xopen
py-xpyb
py-xvfbwrapper
py-yamlreader
py-yamlreader: new package ( #7997 )
2018-05-03 16:58:40 -05:00
py-yapf
py-yt
py-zmq
python
make symlinking python3->python optional ( #7960 )
2018-05-02 12:26:30 -07:00
qbank
qbox
qhull
qmcpack
qmd-progress
qrupdate
qt
qt-creator
qtgraph
qthreads
quinoa
qwt
r
add versions 3.4.3. and 3.5.0 ( #7929 )
2018-04-26 21:12:17 -05:00
r-a4
r-a4base
r-a4classif
r-a4core
r-a4preproc
r-a4reporting
r-abadata
r-abaenrichment
r-abind
r-absseq
r-acde
r-acepack
r-acgh
r-acme
r-ada
r-adabag
r-ade4
r-adegenet
r-adsplit
r-affxparser
r-affy
r-affycomp
r-affycompatible
r-affycontam
r-affycoretools
r-affydata
r-affyexpress
r-affyilm
r-affyio
r-affypdnn
r-affyplm
r-affyqcreport
r-affyrnadegradation
r-agdex
r-agilp
r-agimicrorna
r-aims
r-aldex2
r-allelicimbalance
r-alpine
r-als
r-alsace
r-altcdfenvs
r-ampliqueso
r-analysispageserver
r-anaquin
r-aneufinder
r-aneufinderdata
r-annaffy
r-annotate
r-annotationdbi
r-annotationfilter
r-annotationforge
r-annotationhub
r-ape
r-assertthat
r-backports
r-bamsignals
r-base64
r-base64enc
r-bbmisc
Additional r packages ( #7892 )
2018-04-25 20:59:46 -05:00
r-beanplot
r-bh
r-bindr
r-bindrcpp
r-biobase
r-biocgenerics
r-biocinstaller
r-biocparallel
r-biocstyle
r-biom-utils
py-mg-rast-tools: Create new package and its dependencies. ( #7816 )
2018-04-21 10:28:44 -05:00
r-biomart
r-biomformat
r-biostrings
r-biovizbase
r-bit
r-bit64
r-bitops
r-blob
r-bookdown
r-boot
r-brew
r-broom
r-bsgenome
r-bumphunter
r-c50
r-callr
r-car
r-caret
r-category
r-catools
r-cdcfluview
r-cdcfluview: new package ( #8089 )
2018-05-12 18:28:18 -05:00
r-cellranger
r-checkmate
r-checkpoint
r-chemometrics
r-chron
r-circlize
r-class
r-classint
r-cli
r-clipr
r-cluster
r-clusterprofiler
r-cner
r-coda
r-codetools
r-coin
r-colorspace
r-complexheatmap
r-corpcor
r-corrplot
r-covr
r-cowplot
r-crayon
r-crosstalk
r-cubature
r-cubist
r-curl
r-data-table
r-dbi
r-dbplyr
r-delayedarray
r-deldir
r-dendextend
r-deoptim
r-deoptimr
r-deseq
r-deseq2
r-desolve
r-devtools
r-diagrammer
r-dicekriging
Additional r packages ( #7892 )
2018-04-25 20:59:46 -05:00
r-dichromat
r-diffusionmap
r-digest
r-diptest
r-dirichletmultinomial
r-dnacopy
r-do-db
r-domc
r-doparallel
r-dorng
r-dose
r-downloader
r-dplyr
r-dt
r-dtw
r-dygraphs
r-e1071
r-edger
r-ellipse
r-ensembldb
r-ergm
r-evaluate
r-expm
r-factoextra
r-factominer
r-fastmatch
r-ff
r-fftwtools
r-fgsea
r-filehash
r-flashclust
r-flexclust
r-flexmix
r-fnn
r-forcats
r-foreach
r-forecast
r-foreign
r-formatr
r-formula
r-fpc
r-fracdiff
r-futile-logger
r-futile-options
r-gbm
r-gcrma
r-gdata
r-gdsfmt
r-geiger
r-genefilter
r-geneplotter
r-genie3
r-genie3: new package ( #8044 )
2018-05-07 17:23:45 -05:00
r-genomeinfodb
r-genomeinfodbdata
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-geomorph
r-geoquery
r-geosphere
r-getopt
r-getoptlong
r-ggally
r-ggbio
r-ggdendro
r-ggjoy
r-ggmap
r-ggplot2
r-ggpubr
r-ggrepel
r-ggridges
r-ggsci
r-ggvis
r-gistr
r-git2r
r-glmnet
r-globaloptions
r-glue
r-gmodels
r-gmp
r-go-db
r-googlevis
r-gosemsim
r-gostats
r-gplots
r-graph
r-gridbase
r-gridextra
r-gseabase
r-gss
r-gsubfn
r-gtable
r-gtools
r-gtrellis
r-gviz
r-haven
r-hexbin
r-highr
r-hmisc
r-hms
r-htmltable
r-htmltools
r-htmlwidgets
r-httpuv
r-httr
r-hwriter
r-hypergraph
r-ica
r-igraph
r-illuminaio
r-impute
r-influencer
r-inline
r-interactivedisplaybase
r-ipred
r-iranges
r-irdisplay
r-irkernel
r-irlba
r-iso
r-iterators
r-janitor
r-jaspar2018
r-jpeg
r-jsonlite
r-kegg-db
r-kegggraph
r-keggrest
r-kernlab
r-kernsmooth
r-kknn
r-knitr
r-labeling
r-lambda-r
r-laplacesdemon
r-lars
r-lattice
r-latticeextra
r-lava
r-lazyeval
r-leaflet
r-leaps
r-learnbayes
r-lhs
Additional r packages ( #7892 )
2018-04-25 20:59:46 -05:00
r-limma
r-lme4
r-lmtest
r-locfit
r-log4r
r-lpsolve
r-lsei
r-lubridate
r-magic
r-magrittr
r-makecdfenv
r-maldiquant
r-mapproj
r-maps
r-maptools
r-markdown
r-mass
r-matr
py-mg-rast-tools: Create new package and its dependencies. ( #7816 )
2018-04-21 10:28:44 -05:00
r-matrix
r-matrixmodels
r-matrixstats
r-mclust
r-mcmcglmm
r-mco
Additional r packages ( #7892 )
2018-04-25 20:59:46 -05:00
r-mda
r-memoise
r-mergemaid
r-methodss3
r-mgcv
r-mgraster
py-mg-rast-tools: Create new package and its dependencies. ( #7816 )
2018-04-21 10:28:44 -05:00
r-mime
r-minfi
r-minqa
r-misc3d
Additional r packages ( #7892 )
2018-04-25 20:59:46 -05:00
r-mixtools
r-mlbench
r-mlinterfaces
r-mlr
Additional r packages ( #7892 )
2018-04-25 20:59:46 -05:00
r-mlrmbo
Additional r packages ( #7892 )
2018-04-25 20:59:46 -05:00
r-mmwrweek
r-mmwrweek: new pacakge ( #8086 )
2018-05-10 17:32:58 -05:00
r-mnormt
r-modelmetrics
r-modelr
r-modeltools
r-mpm
r-msnbase
r-multcomp
r-multtest
r-munsell
r-mvtnorm
r-mzid
r-mzr
r-nanotime
r-ncbit
r-ncdf4
r-network
r-networkd3
r-nlme
r-nloptr
r-nmf
r-nnet
r-nnls
r-nor1mix
r-np
r-numderiv
r-oligoclasses
r-oo
r-openssl
r-org-hs-eg-db
r-organismdbi
r-packrat
r-pacman
r-pamr
r-parallelmap
Additional r packages ( #7892 )
2018-04-25 20:59:46 -05:00
r-paramhelpers
Additional r packages ( #7892 )
2018-04-25 20:59:46 -05:00
r-party
r-partykit
r-pathview
r-pbapply
r-pbdzmq
r-pbkrtest
r-pcamethods
r-pcapp
r-permute
r-pfam-db
r-phangorn
r-phantompeakqualtools
r-phyloseq
r-pkgconfig
r-pkgmaker
r-plogr
r-plot3d
Additional r packages ( #7892 )
2018-04-25 20:59:46 -05:00
r-plotly
r-plotrix
r-pls
r-plyr
r-pmcmr
r-png
r-powerlaw
r-prabclus
r-praise
r-preprocesscore
r-prettyunits
r-prodlim
r-progress
r-protgenerics
r-proto
r-proxy
r-pryr
r-psych
r-ptw
r-purrr
r-quadprog
r-quantmod
r-quantreg
r-quantro
r-qvalue
r-r6
r-randomforest
r-ranger
r-rappdirs
r-raster
r-rbgl
r-rbokeh
r-rcolorbrewer
r-rcpp
Bump r-rcpp versions. ( #8016 )
2018-05-03 22:54:45 -05:00
r-rcpparmadillo
r-rcppblaze
r-rcppcctz
r-rcppeigen
r-rcppprogress
r-rcurl
r-rda
r-readr
r-readxl
r-registry
r-rematch
r-reordercluster
r-reportingtools
r-repr
r-reprex
r-reshape
r-reshape2
r-rex
r-rgdal
r-rgenoud
Additional r packages ( #7892 )
2018-04-25 20:59:46 -05:00
r-rgeos
r-rgl
r-rgooglemaps
r-rgraphviz
r-rhdf5
r-rhtslib
r-rinside
Additional r packages ( #7892 )
2018-04-25 20:59:46 -05:00
r-rjags
r-rjava
r-rjson
r-rjsonio
r-rlang
r-rmarkdown
r-rminer
r-rmpfr
r-rmpi
r-rmysql
r-rngtools
r-robustbase
r-rocr
r-rodbc
r-roxygen2
r-rpart
r-rpart-plot
r-rpostgresql
r-rprojroot
r-rsamtools
r-rsnns
r-rsolnp
r-rsqlite
r-rstan
r-rstudioapi
r-rtracklayer
r-rtsne
r-rvcheck
r-rvest
r-rzmq
r-s4vectors
r-samr
r-sandwich
r-scales
r-scatterplot3d
r-sdmtools
r-segmented
r-selectr
r-seqinr
r-seqlogo
r-seurat
r-sf
r-sfsmisc
r-shape
r-shiny
r-shortread
r-siggenes
r-simpleaffy
r-smoof
Additional r packages ( #7892 )
2018-04-25 20:59:46 -05:00
r-sn
r-snow
r-snowfall
r-snprelate
r-som
r-somaticsignatures
r-sourcetools
r-sp
r-sparsem
r-spdep
r-speedglm
r-spem
r-sqldf
r-stanheaders
r-statmod
r-statnet-common
r-stringi
r-stringr
r-strucchange
r-subplex
r-summarizedexperiment
r-survey
r-survival
r-sva
r-tarifx
r-tclust
r-tensora
r-testit
r-testthat
r-tfbstools
r-tfmpvalue
r-th-data
r-threejs
r-tibble
r-tidycensus
r-tidyr
r-tidyselect
r-tidyverse
r-tiff
r-tigris
r-timedate
r-tmixclust
r-topgo
r-trimcluster
r-truncnorm
r-trust
r-tseries
r-tsne
r-ttr
r-udunits2
r-units
r-utils
r-uuid
r-variantannotation
r-varselrf
r-vcd
r-vegan
r-vgam
r-viridis
r-viridislite
r-visnetwork
r-vsn
r-whisker
r-withr
r-xde
r-xgboost
r-xlconnect
r-xlconnectjars
r-xlsx
r-xlsxjars
r-xmapbridge
r-xml
r-xml2
r-xtable
r-xts
r-xvector
r-yaml
r-yapsa
r-yaqcaffy
r-yarn
r-zlibbioc
r-zoo
racon
new package: racon (bioinformatics) ( #7726 )
2018-04-22 07:54:48 -05:00
raft
ragel
New colm, ragel packages ( #7867 )
2018-04-23 10:50:58 -05:00
raja
randfold
random123
randrproto
rapidjson
ravel
raxml
ray
rdma-core
rdma-core: new package ( #7835 )
2018-04-25 10:33:30 -05:00
rdp-classifier
re2c
readfq
readline
recordproto
redundans
relion
rempi
rename
rendercheck
renderproto
repeatmasker
resourceproto
revbayes
rgb
rhash
rlwrap
rmlab
rna-seqc
rockstar
root
rose
rr
rsbench
rsem
rstart
rsync
rtags
rtax
ruby
ruby-gnuplot
ruby-narray
ruby-ronn
ruby-rubyinline
ruby-svn2git
New Package: ruby-svn2git ( #7979 )
2018-05-03 10:12:57 -05:00
ruby-terminal-table
rust
rust-bindgen
sabre
sailfish
salmon
sambamba
samblaster
samrai
samtools
Bump samtools, hstlib and bcftools to version 1.8. ( #8020 )
2018-05-04 16:27:54 -05:00
sandbox
sas
satsuma2
savanna
saws
sbt
scala
Added the latest versions of a few packages ( #7910 )
2018-04-26 14:46:45 +02:00
scalasca
scalpel
scan-for-matches
scons
scorec-core
scorep
scotch
scr
screen
scripts
scrnsaverproto
sctk
sdl2
sdl2-image
sed
seqan
seqprep
seqtk
serf
sessreg
setxkbmap
sga
shapeit
shared-mime-info
added shared-mime-info version 1.9 ( #8063 )
2018-05-08 17:52:02 -05:00
shiny-server
shocklibs
py-mg-rast-tools: Create new package and its dependencies. ( #7816 )
2018-04-21 10:28:44 -05:00
shoremap
shoremap: new package ( #7343 )
2018-05-12 08:22:45 +02:00
shortbred
shortstack
showfont
sickle
siesta
signalp
signify
silo
simplemoc
simul
simulationio
singularity
slepc
petsc and slepc: add 3.9.0; hypre: add 2.14 (needed by petsc) ( #7877 )
2018-04-24 07:10:46 -05:00
slurm
smalt
smproxy
snakemake
snap
snap-berkeley
snap-korf
snappy
snbone
sniffles
snpeff
snphylo
snptest
soap2
soapdenovo2
soapdenovo-trans
soapindel
soapsnp
sofa-c
somatic-sniper
sortmerna
sosflow
sowing
sox
spades
spark
Added the latest versions of a few packages ( #7910 )
2018-04-26 14:46:45 +02:00
sparsehash
sparta
spdlog
spectrum-mpi
Fix Spectrum MPI package spec file for PGI compilers ( #7964 )
2018-05-02 08:12:08 -05:00
speex
spglib
sph2pipe
spherepack
spindle
spot
sqlite
squid
sra-toolkit
sspace-longread
sspace-standard
sst-dumpi
sst-macro
stacks
staden-io-lib
star
star-ccm-plus
startup-notification
stat
added stat version 4.0.0 ( #8062 )
2018-05-08 17:52:38 -05:00
stc
stow
strace
stream
strelka
stress
stringtie
structure
sublime-text
subread
subversion
suite-sparse
Suite-sparse: provide patch to fix builts with clang@6.0.0. ( #7811 )
2018-04-19 08:59:55 -05:00
sumaclust
sundials
Add new Sundials versions ( #8075 )
2018-05-09 20:53:25 -05:00
superlu
superlu-dist
superlu-mt
supernova
sw4lite
swarm
swfft
Use GitLab's API endpoint for fetching a git snapshot. ( #7881 )
2018-04-26 16:40:11 -05:00
swiftsim
adds new version to swiftsim ( #8093 )
2018-05-11 10:32:30 -05:00
swig
symengine
sympol
sz
ADIOS 1.13.1 & SZ 1.4.12.3 ( #7808 )
2018-04-18 10:52:13 -05:00
tabix
talloc
tantan
tar
Added the latest versions of a few packages ( #7910 )
2018-04-26 14:46:45 +02:00
targetp
task
taskd
tasmanian
tassel
tau
tcl
tcl-tcllib
tcl-tclxml
tclap
tcoffee
tcptrace
tcsh
tealeaf
tetgen
tethex
texinfo
texlive
Create custom PATH that texlive requires in its module. ( #8064 )
2018-05-12 18:40:36 -05:00
the-platinum-searcher
the-silver-searcher
thrift
thrust
tig
tinyxml
Build shared libs for tinyxml. ( #7914 )
2018-04-30 10:03:24 -05:00
tinyxml2
tioga
tk
tmalign
tmhmm
tmux
Added the latest versions of a few packages ( #7910 )
2018-04-26 14:46:45 +02:00
tmuxinator
tophat
tppred
transabyss
transdecoder
transposome
transset
trapproto
tree
trf
triangle
trilinos
trilinos: minor cleanup ( #7987 )
2018-05-07 06:45:49 -05:00
trimgalore
trimmomatic
trinity
Add Trinity package ( #7828 )
2018-04-26 09:11:58 -05:00
trnascan-se
turbine
turbomole
tut
twm
tycho2
typhon
Added BookLeaf_Cpp and Typhon packages. ( #7969 )
2018-05-02 10:45:30 -05:00
typhonio
uberftp
ucx
ucx: needs numactl and rdma-core ( #7836 )
2018-04-25 10:34:55 -05:00
udunits2
ufo-core
ufo-filters
unblur
uncrustify
unibilium
unison
units
unixodbc
unzip
usearch
util-linux
util-macros
uuid
valgrind
vampirtrace
vardictjava
varscan
vc
vcftools
vcsh
vdt
vecgeom
Use GitLab's API endpoint for fetching a git snapshot. ( #7881 )
2018-04-26 16:40:11 -05:00
veclibfort
vegas2
velvet
verilator
videoproto
viennarna
viewres
vim
virtualgl
visit
vizglow
vmatch
voropp
votca-csg
votca-ctp
votca-tools
votca-xtp
vpfft
vpic
vsearch
vt
vt: Create new package ( #7947 )
2018-04-30 12:11:06 -05:00
vtk
vtkh
vtkm
Use GitLab's API endpoint for fetching a git snapshot. ( #7881 )
2018-04-26 16:40:11 -05:00
wannier90
wcslib
wget
wgsim
windowswmproto
wireshark
wireshark: stop cmake from picking up /usr paths ( #8053 )
2018-05-10 06:58:43 -05:00
wt
wx
wxpropgrid
x11perf
xapian-core
xauth
xbacklight
xbiff
xbitmaps
xbraid
xcalc
xcb-demo
xcb-proto
xcb-util
xcb-util-cursor
xcb-util-errors
xcb-util-image
xcb-util-keysyms
xcb-util-renderutil
xcb-util-wm
xcb-util-xrm
xclip
xclipboard
xclock
xcmiscproto
xcmsdb
xcompmgr
xconsole
xcursor-themes
xcursorgen
xdbedizzy
xditview
xdm
xdpyinfo
xdriinfo
xedit
xerces-c
xev
xextproto
xeyes
xf86bigfontproto
xf86dga
xf86dgaproto
xf86driproto
xf86miscproto
xf86rushproto
xf86vidmodeproto
xfd
xfindproxy
xfontsel
xfs
xfsinfo
xfwp
xgamma
xgc
xhost
xineramaproto
xinit
xinput
xios
xkbcomp
xkbdata
xkbevd
xkbprint
xkbutils
xkeyboard-config
xkill
xload
xlogo
xlsatoms
xlsclients
xlsfonts
xmag
xman
xmessage
xmh
xmlf90
xmlto
xmodmap
xmore
xorg-cf-files
xorg-docs
xorg-gtest
xorg-server
xorg-sgml-doctools
xphelloworld
xplor-nih
xplsprinters
xpr
xprehashprinterlist
xprop
xproto
xproxymanagementprotocol
xqilla
xrandr
xrandr: needs randrproto ( #7814 )
2018-04-18 14:02:04 -05:00
xrdb
xrefresh
xrootd
Update with recent versions through 4.8.3 and add variants. ( #7933 )
2018-04-27 10:11:33 -05:00
xrx
xsbench
xscope
xsdk
xsdktrilinos
xset
xsetmode
xsetpointer
xsetroot
xsimd
xsm
xstdcmap
xtensor
xtensor-python
xterm
xtl
xtrans
xtrap
xts
xvidtune
xvinfo
xwd
xwininfo
xwud
xz
yajl
yambo
yaml-cpp
yasm
yorick
z3
zeromq
zfp
zip
zlib
zoltan
zsh
zstd
