2d93154119
* Rework spack.util.web.list_url()
list_url() now accepts an optional recursive argument (default: False)
for controlling whether to only return files within the prefix url or to
return all files whose path starts with the prefix url. Allows for the
most effecient implementation for the given prefix url scheme. For
example, only recursive queries are supported for S3 prefixes, so the
returned list is trimmed down if recursive == False, but the native
search is returned as-is when recursive == True. Suitable
implementations for each case are also used for file system URLs.
* Switch to using an explicit index for public keys
Switches to maintaining a build cache's keys under build_cache/_pgp.
Within this directory is an index.json file listing all the available
keys and a <fingerprint>.pub file for each such key.
- Adds spack.binary_distribution.generate_key_index()
- (re)generates a build cache's key index
- Modifies spack.binary_distribution.build_tarball()
- if tarball is signed, automatically pushes the key used for signing
along with the tarball
- if regenerate_index == True, automatically (re)generates the build
cache's key index along with the build cache's package index; as in
spack.binary_distribution.generate_key_index()
- Modifies spack.binary_distribution.get_keys()
- a build cache's key index is now used instead of programmatic
listing
- Adds spack.binary_distribution.push_keys()
- publishes keys from Spack's keyring to a given list of mirrors
- Adds new spack subcommand: spack gpg publish
- publishes keys from Spack's keyring to a given list of mirrors
- Modifies spack.util.gpg.Gpg.signing_keys()
- Accepts optional positional arguments for filtering the set of keys
returned
- Adds spack.util.gpg.Gpg.public_keys()
- As spack.util.gpg.Gpg.signing_keys(), except public keys are
returned
- Modifies spack.util.gpg.Gpg.export_keys()
- Fixes an issue where GnuPG would prompt for user input if trying to
overwrite an existing file
- Modifies spack.util.gpg.Gpg.untrust()
- Fixes an issue where GnuPG would fail for input that were not key
fingerprints
- Modifies spack.util.web.url_exists()
- Fixes an issue where url_exists() would throw instead of returning
False
* rework gpg module/fix error with very long GNUPGHOME dir
* add a shim for functools.cached_property
* handle permission denied error in gpg util
* fix tests/make gpgconf optional if no socket dir is available
1225 lines
43 KiB
Python
1225 lines
43 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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import codecs
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import os
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import re
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import tarfile
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import shutil
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import tempfile
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import hashlib
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import glob
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from contextlib import closing
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import ruamel.yaml as yaml
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import json
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from six.moves.urllib.error import URLError
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import llnl.util.tty as tty
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from llnl.util.filesystem import mkdirp
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import spack.cmd
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import spack.config as config
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import spack.database as spack_db
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import spack.fetch_strategy as fs
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import spack.relocate as relocate
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import spack.util.gpg
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import spack.util.spack_json as sjson
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import spack.util.spack_yaml as syaml
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import spack.mirror
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import spack.util.url as url_util
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import spack.util.web as web_util
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from spack.spec import Spec
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from spack.stage import Stage
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_build_cache_relative_path = 'build_cache'
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_build_cache_keys_relative_path = '_pgp'
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BUILD_CACHE_INDEX_TEMPLATE = '''
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<html>
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<head>
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<title>{title}</title>
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</head>
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<body>
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<ul>
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{path_list}
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</ul>
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</body>
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</html>
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'''
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BUILD_CACHE_INDEX_ENTRY_TEMPLATE = ' <li><a href="{path}">{path}</a></li>'
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class NoOverwriteException(spack.error.SpackError):
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"""
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Raised when a file exists and must be overwritten.
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"""
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def __init__(self, file_path):
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err_msg = "\n%s\nexists\n" % file_path
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err_msg += "Use -f option to overwrite."
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super(NoOverwriteException, self).__init__(err_msg)
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class NoGpgException(spack.error.SpackError):
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"""
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Raised when gpg2 is not in PATH
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"""
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def __init__(self, msg):
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super(NoGpgException, self).__init__(msg)
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class NoKeyException(spack.error.SpackError):
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"""
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Raised when gpg has no default key added.
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"""
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def __init__(self, msg):
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super(NoKeyException, self).__init__(msg)
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class PickKeyException(spack.error.SpackError):
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"""
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Raised when multiple keys can be used to sign.
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"""
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def __init__(self, keys):
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err_msg = "Multiple keys available for signing\n%s\n" % keys
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err_msg += "Use spack buildcache create -k <key hash> to pick a key."
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super(PickKeyException, self).__init__(err_msg)
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class NoVerifyException(spack.error.SpackError):
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"""
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Raised if file fails signature verification.
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"""
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pass
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class NoChecksumException(spack.error.SpackError):
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"""
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Raised if file fails checksum verification.
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"""
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pass
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class NewLayoutException(spack.error.SpackError):
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"""
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Raised if directory layout is different from buildcache.
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"""
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def __init__(self, msg):
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super(NewLayoutException, self).__init__(msg)
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def build_cache_relative_path():
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return _build_cache_relative_path
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def build_cache_prefix(prefix):
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return os.path.join(prefix, build_cache_relative_path())
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def buildinfo_file_name(prefix):
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"""
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Filename of the binary package meta-data file
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"""
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name = os.path.join(prefix, ".spack/binary_distribution")
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return name
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def read_buildinfo_file(prefix):
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"""
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Read buildinfo file
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"""
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filename = buildinfo_file_name(prefix)
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with open(filename, 'r') as inputfile:
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content = inputfile.read()
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buildinfo = yaml.load(content)
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return buildinfo
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def write_buildinfo_file(spec, workdir, rel=False):
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"""
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Create a cache file containing information
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required for the relocation
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"""
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prefix = spec.prefix
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text_to_relocate = []
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binary_to_relocate = []
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link_to_relocate = []
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blacklist = (".spack", "man")
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prefix_to_hash = dict()
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prefix_to_hash[str(spec.package.prefix)] = spec.dag_hash()
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deps = spack.build_environment.get_rpath_deps(spec.package)
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for d in deps:
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prefix_to_hash[str(d.prefix)] = d.dag_hash()
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# Do this at during tarball creation to save time when tarball unpacked.
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# Used by make_package_relative to determine binaries to change.
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for root, dirs, files in os.walk(prefix, topdown=True):
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dirs[:] = [d for d in dirs if d not in blacklist]
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for filename in files:
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path_name = os.path.join(root, filename)
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m_type, m_subtype = relocate.mime_type(path_name)
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if os.path.islink(path_name):
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link = os.readlink(path_name)
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if os.path.isabs(link):
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# Relocate absolute links into the spack tree
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if link.startswith(spack.store.layout.root):
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rel_path_name = os.path.relpath(path_name, prefix)
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link_to_relocate.append(rel_path_name)
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else:
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msg = 'Absolute link %s to %s ' % (path_name, link)
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msg += 'outside of prefix %s ' % prefix
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msg += 'should not be relocated.'
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tty.warn(msg)
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if relocate.needs_binary_relocation(m_type, m_subtype):
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if not filename.endswith('.o'):
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rel_path_name = os.path.relpath(path_name, prefix)
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binary_to_relocate.append(rel_path_name)
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if relocate.needs_text_relocation(m_type, m_subtype):
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rel_path_name = os.path.relpath(path_name, prefix)
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text_to_relocate.append(rel_path_name)
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# Create buildinfo data and write it to disk
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buildinfo = {}
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buildinfo['relative_rpaths'] = rel
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buildinfo['buildpath'] = spack.store.layout.root
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buildinfo['spackprefix'] = spack.paths.prefix
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buildinfo['relative_prefix'] = os.path.relpath(
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prefix, spack.store.layout.root)
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buildinfo['relocate_textfiles'] = text_to_relocate
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buildinfo['relocate_binaries'] = binary_to_relocate
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buildinfo['relocate_links'] = link_to_relocate
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buildinfo['prefix_to_hash'] = prefix_to_hash
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filename = buildinfo_file_name(workdir)
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with open(filename, 'w') as outfile:
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outfile.write(syaml.dump(buildinfo, default_flow_style=True))
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def tarball_directory_name(spec):
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"""
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Return name of the tarball directory according to the convention
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<os>-<architecture>/<compiler>/<package>-<version>/
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"""
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return "%s/%s/%s-%s" % (spec.architecture,
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str(spec.compiler).replace("@", "-"),
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spec.name, spec.version)
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def tarball_name(spec, ext):
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"""
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Return the name of the tarfile according to the convention
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<os>-<architecture>-<package>-<dag_hash><ext>
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"""
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return "%s-%s-%s-%s-%s%s" % (spec.architecture,
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str(spec.compiler).replace("@", "-"),
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spec.name,
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spec.version,
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spec.dag_hash(),
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ext)
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def tarball_path_name(spec, ext):
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"""
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Return the full path+name for a given spec according to the convention
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<tarball_directory_name>/<tarball_name>
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"""
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return os.path.join(tarball_directory_name(spec),
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tarball_name(spec, ext))
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def checksum_tarball(file):
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# calculate sha256 hash of tar file
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block_size = 65536
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hasher = hashlib.sha256()
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with open(file, 'rb') as tfile:
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buf = tfile.read(block_size)
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while len(buf) > 0:
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hasher.update(buf)
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buf = tfile.read(block_size)
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return hasher.hexdigest()
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def select_signing_key(key=None):
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if key is None:
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keys = spack.util.gpg.signing_keys()
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if len(keys) == 1:
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key = keys[0]
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if len(keys) > 1:
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raise PickKeyException(str(keys))
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if len(keys) == 0:
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raise NoKeyException(
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"No default key available for signing.\n"
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"Use spack gpg init and spack gpg create"
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" to create a default key.")
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return key
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def sign_tarball(key, force, specfile_path):
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if os.path.exists('%s.asc' % specfile_path):
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if force:
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os.remove('%s.asc' % specfile_path)
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else:
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raise NoOverwriteException('%s.asc' % specfile_path)
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key = select_signing_key(key)
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spack.util.gpg.sign(key, specfile_path, '%s.asc' % specfile_path)
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def generate_package_index(cache_prefix):
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"""Create the build cache index page.
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Creates (or replaces) the "index.json" page at the location given in
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cache_prefix. This page contains a link for each binary package (.yaml)
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under cache_prefix.
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"""
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tmpdir = tempfile.mkdtemp()
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db_root_dir = os.path.join(tmpdir, 'db_root')
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db = spack_db.Database(None, db_dir=db_root_dir,
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enable_transaction_locking=False,
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record_fields=['spec', 'ref_count'])
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file_list = (
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entry
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for entry in web_util.list_url(cache_prefix)
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if entry.endswith('.yaml'))
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tty.debug('Retrieving spec.yaml files from {0} to build index'.format(
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cache_prefix))
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for file_path in file_list:
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try:
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yaml_url = url_util.join(cache_prefix, file_path)
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tty.debug('fetching {0}'.format(yaml_url))
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_, _, yaml_file = web_util.read_from_url(yaml_url)
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yaml_contents = codecs.getreader('utf-8')(yaml_file).read()
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# yaml_obj = syaml.load(yaml_contents)
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# s = Spec.from_yaml(yaml_obj)
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s = Spec.from_yaml(yaml_contents)
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db.add(s, None)
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except (URLError, web_util.SpackWebError) as url_err:
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tty.error('Error reading spec.yaml: {0}'.format(file_path))
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tty.error(url_err)
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try:
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index_json_path = os.path.join(db_root_dir, 'index.json')
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with open(index_json_path, 'w') as f:
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db._write_to_file(f)
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web_util.push_to_url(
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index_json_path,
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url_util.join(cache_prefix, 'index.json'),
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keep_original=False,
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extra_args={'ContentType': 'application/json'})
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finally:
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shutil.rmtree(tmpdir)
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def generate_key_index(key_prefix, tmpdir=None):
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"""Create the key index page.
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Creates (or replaces) the "index.json" page at the location given in
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key_prefix. This page contains an entry for each key (.pub) under
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key_prefix.
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"""
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tty.debug(' '.join(('Retrieving key.pub files from',
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url_util.format(key_prefix),
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'to build key index')))
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fingerprints = (
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entry[:-4]
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for entry in web_util.list_url(key_prefix, recursive=False)
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if entry.endswith('.pub'))
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keys_local = url_util.local_file_path(key_prefix)
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if keys_local:
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target = os.path.join(keys_local, 'index.json')
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else:
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target = os.path.join(tmpdir, 'index.json')
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index = {
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'keys': dict(
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(fingerprint, {}) for fingerprint
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in sorted(set(fingerprints)))
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}
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with open(target, 'w') as f:
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sjson.dump(index, f)
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if not keys_local:
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web_util.push_to_url(
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target,
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url_util.join(key_prefix, 'index.json'),
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keep_original=False,
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extra_args={'ContentType': 'application/json'})
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def build_tarball(spec, outdir, force=False, rel=False, unsigned=False,
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allow_root=False, key=None, regenerate_index=False):
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"""
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Build a tarball from given spec and put it into the directory structure
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used at the mirror (following <tarball_directory_name>).
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"""
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if not spec.concrete:
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raise ValueError('spec must be concrete to build tarball')
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# set up some paths
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tmpdir = tempfile.mkdtemp()
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cache_prefix = build_cache_prefix(tmpdir)
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tarfile_name = tarball_name(spec, '.tar.gz')
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tarfile_dir = os.path.join(cache_prefix, tarball_directory_name(spec))
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tarfile_path = os.path.join(tarfile_dir, tarfile_name)
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spackfile_path = os.path.join(
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cache_prefix, tarball_path_name(spec, '.spack'))
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remote_spackfile_path = url_util.join(
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outdir, os.path.relpath(spackfile_path, tmpdir))
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mkdirp(tarfile_dir)
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if web_util.url_exists(remote_spackfile_path):
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if force:
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web_util.remove_url(remote_spackfile_path)
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else:
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raise NoOverwriteException(url_util.format(remote_spackfile_path))
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# need to copy the spec file so the build cache can be downloaded
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# without concretizing with the current spack packages
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# and preferences
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spec_file = os.path.join(spec.prefix, ".spack", "spec.yaml")
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specfile_name = tarball_name(spec, '.spec.yaml')
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specfile_path = os.path.realpath(
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os.path.join(cache_prefix, specfile_name))
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remote_specfile_path = url_util.join(
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outdir, os.path.relpath(specfile_path, os.path.realpath(tmpdir)))
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if web_util.url_exists(remote_specfile_path):
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if force:
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web_util.remove_url(remote_specfile_path)
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else:
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raise NoOverwriteException(url_util.format(remote_specfile_path))
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# make a copy of the install directory to work with
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workdir = os.path.join(tmpdir, os.path.basename(spec.prefix))
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# install_tree copies hardlinks
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# create a temporary tarfile from prefix and exract it to workdir
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# tarfile preserves hardlinks
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temp_tarfile_name = tarball_name(spec, '.tar')
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temp_tarfile_path = os.path.join(tarfile_dir, temp_tarfile_name)
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with closing(tarfile.open(temp_tarfile_path, 'w')) as tar:
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tar.add(name='%s' % spec.prefix,
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arcname='.')
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with closing(tarfile.open(temp_tarfile_path, 'r')) as tar:
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tar.extractall(workdir)
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os.remove(temp_tarfile_path)
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# create info for later relocation and create tar
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write_buildinfo_file(spec, workdir, rel)
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# optionally make the paths in the binaries relative to each other
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# in the spack install tree before creating tarball
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if rel:
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try:
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make_package_relative(workdir, spec, allow_root)
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except Exception as e:
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shutil.rmtree(workdir)
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shutil.rmtree(tarfile_dir)
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shutil.rmtree(tmpdir)
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tty.die(e)
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else:
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try:
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check_package_relocatable(workdir, spec, allow_root)
|
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except Exception as e:
|
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shutil.rmtree(workdir)
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shutil.rmtree(tarfile_dir)
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shutil.rmtree(tmpdir)
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tty.die(e)
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|
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# create gzip compressed tarball of the install prefix
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with closing(tarfile.open(tarfile_path, 'w:gz')) as tar:
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tar.add(name='%s' % workdir,
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arcname='%s' % os.path.basename(spec.prefix))
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# remove copy of install directory
|
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shutil.rmtree(workdir)
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|
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# get the sha256 checksum of the tarball
|
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checksum = checksum_tarball(tarfile_path)
|
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|
|
# add sha256 checksum to spec.yaml
|
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with open(spec_file, 'r') as inputfile:
|
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content = inputfile.read()
|
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spec_dict = yaml.load(content)
|
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bchecksum = {}
|
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bchecksum['hash_algorithm'] = 'sha256'
|
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bchecksum['hash'] = checksum
|
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spec_dict['binary_cache_checksum'] = bchecksum
|
|
# Add original install prefix relative to layout root to spec.yaml.
|
|
# This will be used to determine is the directory layout has changed.
|
|
buildinfo = {}
|
|
buildinfo['relative_prefix'] = os.path.relpath(
|
|
spec.prefix, spack.store.layout.root)
|
|
buildinfo['relative_rpaths'] = rel
|
|
spec_dict['buildinfo'] = buildinfo
|
|
spec_dict['full_hash'] = spec.full_hash()
|
|
|
|
tty.debug('The full_hash ({0}) of {1} will be written into {2}'.format(
|
|
spec_dict['full_hash'],
|
|
spec.name,
|
|
url_util.format(remote_specfile_path)))
|
|
tty.debug(spec.tree())
|
|
|
|
with open(specfile_path, 'w') as outfile:
|
|
outfile.write(syaml.dump(spec_dict))
|
|
|
|
# sign the tarball and spec file with gpg
|
|
if not unsigned:
|
|
key = select_signing_key(key)
|
|
sign_tarball(key, force, specfile_path)
|
|
|
|
# put tarball, spec and signature files in .spack archive
|
|
with closing(tarfile.open(spackfile_path, 'w')) as tar:
|
|
tar.add(name=tarfile_path, arcname='%s' % tarfile_name)
|
|
tar.add(name=specfile_path, arcname='%s' % specfile_name)
|
|
if not unsigned:
|
|
tar.add(name='%s.asc' % specfile_path,
|
|
arcname='%s.asc' % specfile_name)
|
|
|
|
# cleanup file moved to archive
|
|
os.remove(tarfile_path)
|
|
if not unsigned:
|
|
os.remove('%s.asc' % specfile_path)
|
|
|
|
web_util.push_to_url(
|
|
spackfile_path, remote_spackfile_path, keep_original=False)
|
|
web_util.push_to_url(
|
|
specfile_path, remote_specfile_path, keep_original=False)
|
|
|
|
tty.debug('Buildcache for "{0}" written to \n {1}'
|
|
.format(spec, remote_spackfile_path))
|
|
|
|
try:
|
|
# push the key to the build cache's _pgp directory so it can be
|
|
# imported
|
|
if not unsigned:
|
|
push_keys(outdir,
|
|
keys=[key],
|
|
regenerate_index=regenerate_index,
|
|
tmpdir=tmpdir)
|
|
|
|
# create an index.json for the build_cache directory so specs can be
|
|
# found
|
|
if regenerate_index:
|
|
generate_package_index(url_util.join(
|
|
outdir, os.path.relpath(cache_prefix, tmpdir)))
|
|
finally:
|
|
shutil.rmtree(tmpdir)
|
|
|
|
return None
|
|
|
|
|
|
def download_tarball(spec):
|
|
"""
|
|
Download binary tarball for given package into stage area
|
|
Return True if successful
|
|
"""
|
|
if not spack.mirror.MirrorCollection():
|
|
tty.die("Please add a spack mirror to allow " +
|
|
"download of pre-compiled packages.")
|
|
|
|
tarball = tarball_path_name(spec, '.spack')
|
|
|
|
for mirror in spack.mirror.MirrorCollection().values():
|
|
url = url_util.join(
|
|
mirror.fetch_url, _build_cache_relative_path, tarball)
|
|
|
|
# stage the tarball into standard place
|
|
stage = Stage(url, name="build_cache", keep=True)
|
|
stage.create()
|
|
try:
|
|
stage.fetch()
|
|
return stage.save_filename
|
|
except fs.FetchError:
|
|
continue
|
|
|
|
return None
|
|
|
|
|
|
def make_package_relative(workdir, spec, allow_root):
|
|
"""
|
|
Change paths in binaries to relative paths. Change absolute symlinks
|
|
to relative symlinks.
|
|
"""
|
|
prefix = spec.prefix
|
|
buildinfo = read_buildinfo_file(workdir)
|
|
old_layout_root = buildinfo['buildpath']
|
|
orig_path_names = list()
|
|
cur_path_names = list()
|
|
for filename in buildinfo['relocate_binaries']:
|
|
orig_path_names.append(os.path.join(prefix, filename))
|
|
cur_path_names.append(os.path.join(workdir, filename))
|
|
|
|
platform = spack.architecture.get_platform(spec.platform)
|
|
if 'macho' in platform.binary_formats:
|
|
relocate.make_macho_binaries_relative(
|
|
cur_path_names, orig_path_names, old_layout_root)
|
|
|
|
if 'elf' in platform.binary_formats:
|
|
relocate.make_elf_binaries_relative(
|
|
cur_path_names, orig_path_names, old_layout_root)
|
|
|
|
relocate.raise_if_not_relocatable(cur_path_names, allow_root)
|
|
orig_path_names = list()
|
|
cur_path_names = list()
|
|
for linkname in buildinfo.get('relocate_links', []):
|
|
orig_path_names.append(os.path.join(prefix, linkname))
|
|
cur_path_names.append(os.path.join(workdir, linkname))
|
|
relocate.make_link_relative(cur_path_names, orig_path_names)
|
|
|
|
|
|
def check_package_relocatable(workdir, spec, allow_root):
|
|
"""
|
|
Check if package binaries are relocatable.
|
|
Change links to placeholder links.
|
|
"""
|
|
buildinfo = read_buildinfo_file(workdir)
|
|
cur_path_names = list()
|
|
for filename in buildinfo['relocate_binaries']:
|
|
cur_path_names.append(os.path.join(workdir, filename))
|
|
relocate.raise_if_not_relocatable(cur_path_names, allow_root)
|
|
|
|
|
|
def relocate_package(spec, allow_root):
|
|
"""
|
|
Relocate the given package
|
|
"""
|
|
workdir = str(spec.prefix)
|
|
buildinfo = read_buildinfo_file(workdir)
|
|
new_layout_root = str(spack.store.layout.root)
|
|
new_prefix = str(spec.prefix)
|
|
new_rel_prefix = str(os.path.relpath(new_prefix, new_layout_root))
|
|
new_spack_prefix = str(spack.paths.prefix)
|
|
old_layout_root = str(buildinfo['buildpath'])
|
|
old_spack_prefix = str(buildinfo.get('spackprefix'))
|
|
old_rel_prefix = buildinfo.get('relative_prefix')
|
|
old_prefix = os.path.join(old_layout_root, old_rel_prefix)
|
|
rel = buildinfo.get('relative_rpaths')
|
|
prefix_to_hash = buildinfo.get('prefix_to_hash', None)
|
|
if (old_rel_prefix != new_rel_prefix and not prefix_to_hash):
|
|
msg = "Package tarball was created from an install "
|
|
msg += "prefix with a different directory layout and an older "
|
|
msg += "buildcache create implementation. It cannot be relocated."
|
|
raise NewLayoutException(msg)
|
|
# older buildcaches do not have the prefix_to_hash dictionary
|
|
# need to set an empty dictionary and add one entry to
|
|
# prefix_to_prefix to reproduce the old behavior
|
|
if not prefix_to_hash:
|
|
prefix_to_hash = dict()
|
|
hash_to_prefix = dict()
|
|
hash_to_prefix[spec.format('{hash}')] = str(spec.package.prefix)
|
|
new_deps = spack.build_environment.get_rpath_deps(spec.package)
|
|
for d in new_deps:
|
|
hash_to_prefix[d.format('{hash}')] = str(d.prefix)
|
|
prefix_to_prefix = dict()
|
|
for orig_prefix, hash in prefix_to_hash.items():
|
|
prefix_to_prefix[orig_prefix] = hash_to_prefix.get(hash, None)
|
|
prefix_to_prefix[old_prefix] = new_prefix
|
|
prefix_to_prefix[old_layout_root] = new_layout_root
|
|
|
|
tty.debug("Relocating package from",
|
|
"%s to %s." % (old_layout_root, new_layout_root))
|
|
|
|
def is_backup_file(file):
|
|
return file.endswith('~')
|
|
|
|
# Text files containing the prefix text
|
|
text_names = list()
|
|
for filename in buildinfo['relocate_textfiles']:
|
|
text_name = os.path.join(workdir, filename)
|
|
# Don't add backup files generated by filter_file during install step.
|
|
if not is_backup_file(text_name):
|
|
text_names.append(text_name)
|
|
|
|
# If we are not installing back to the same install tree do the relocation
|
|
if old_layout_root != new_layout_root:
|
|
files_to_relocate = [os.path.join(workdir, filename)
|
|
for filename in buildinfo.get('relocate_binaries')
|
|
]
|
|
# If the buildcache was not created with relativized rpaths
|
|
# do the relocation of path in binaries
|
|
platform = spack.architecture.get_platform(spec.platform)
|
|
if 'macho' in platform.binary_formats:
|
|
relocate.relocate_macho_binaries(files_to_relocate,
|
|
old_layout_root,
|
|
new_layout_root,
|
|
prefix_to_prefix, rel,
|
|
old_prefix,
|
|
new_prefix)
|
|
|
|
if 'elf' in platform.binary_formats:
|
|
relocate.relocate_elf_binaries(files_to_relocate,
|
|
old_layout_root,
|
|
new_layout_root,
|
|
prefix_to_prefix, rel,
|
|
old_prefix,
|
|
new_prefix)
|
|
# Relocate links to the new install prefix
|
|
links = [link for link in buildinfo.get('relocate_links', [])]
|
|
relocate.relocate_links(
|
|
links, old_layout_root, old_prefix, new_prefix
|
|
)
|
|
|
|
# For all buildcaches
|
|
# relocate the install prefixes in text files including dependencies
|
|
relocate.relocate_text(text_names,
|
|
old_layout_root, new_layout_root,
|
|
old_prefix, new_prefix,
|
|
old_spack_prefix,
|
|
new_spack_prefix,
|
|
prefix_to_prefix)
|
|
|
|
paths_to_relocate = [old_prefix, old_layout_root]
|
|
paths_to_relocate.extend(prefix_to_hash.keys())
|
|
files_to_relocate = list(filter(
|
|
lambda pathname: not relocate.file_is_relocatable(
|
|
pathname, paths_to_relocate=paths_to_relocate),
|
|
map(lambda filename: os.path.join(workdir, filename),
|
|
buildinfo['relocate_binaries'])))
|
|
# relocate the install prefixes in binary files including dependencies
|
|
relocate.relocate_text_bin(files_to_relocate,
|
|
old_prefix, new_prefix,
|
|
old_spack_prefix,
|
|
new_spack_prefix,
|
|
prefix_to_prefix)
|
|
|
|
# If we are installing back to the same location
|
|
# relocate the sbang location if the spack directory changed
|
|
else:
|
|
if old_spack_prefix != new_spack_prefix:
|
|
relocate.relocate_text(text_names,
|
|
old_layout_root, new_layout_root,
|
|
old_prefix, new_prefix,
|
|
old_spack_prefix,
|
|
new_spack_prefix,
|
|
prefix_to_prefix)
|
|
|
|
|
|
def extract_tarball(spec, filename, allow_root=False, unsigned=False,
|
|
force=False):
|
|
"""
|
|
extract binary tarball for given package into install area
|
|
"""
|
|
if os.path.exists(spec.prefix):
|
|
if force:
|
|
shutil.rmtree(spec.prefix)
|
|
else:
|
|
raise NoOverwriteException(str(spec.prefix))
|
|
|
|
tmpdir = tempfile.mkdtemp()
|
|
stagepath = os.path.dirname(filename)
|
|
spackfile_name = tarball_name(spec, '.spack')
|
|
spackfile_path = os.path.join(stagepath, spackfile_name)
|
|
tarfile_name = tarball_name(spec, '.tar.gz')
|
|
tarfile_path = os.path.join(tmpdir, tarfile_name)
|
|
specfile_name = tarball_name(spec, '.spec.yaml')
|
|
specfile_path = os.path.join(tmpdir, specfile_name)
|
|
|
|
with closing(tarfile.open(spackfile_path, 'r')) as tar:
|
|
tar.extractall(tmpdir)
|
|
# some buildcache tarfiles use bzip2 compression
|
|
if not os.path.exists(tarfile_path):
|
|
tarfile_name = tarball_name(spec, '.tar.bz2')
|
|
tarfile_path = os.path.join(tmpdir, tarfile_name)
|
|
if not unsigned:
|
|
if os.path.exists('%s.asc' % specfile_path):
|
|
try:
|
|
suppress = config.get('config:suppress_gpg_warnings', False)
|
|
spack.util.gpg.verify(
|
|
'%s.asc' % specfile_path, specfile_path, suppress)
|
|
except Exception as e:
|
|
shutil.rmtree(tmpdir)
|
|
raise e
|
|
else:
|
|
shutil.rmtree(tmpdir)
|
|
raise NoVerifyException(
|
|
"Package spec file failed signature verification.\n"
|
|
"Use spack buildcache keys to download "
|
|
"and install a key for verification from the mirror.")
|
|
# get the sha256 checksum of the tarball
|
|
checksum = checksum_tarball(tarfile_path)
|
|
|
|
# get the sha256 checksum recorded at creation
|
|
spec_dict = {}
|
|
with open(specfile_path, 'r') as inputfile:
|
|
content = inputfile.read()
|
|
spec_dict = syaml.load(content)
|
|
bchecksum = spec_dict['binary_cache_checksum']
|
|
|
|
# if the checksums don't match don't install
|
|
if bchecksum['hash'] != checksum:
|
|
shutil.rmtree(tmpdir)
|
|
raise NoChecksumException(
|
|
"Package tarball failed checksum verification.\n"
|
|
"It cannot be installed.")
|
|
|
|
new_relative_prefix = str(os.path.relpath(spec.prefix,
|
|
spack.store.layout.root))
|
|
# if the original relative prefix is in the spec file use it
|
|
buildinfo = spec_dict.get('buildinfo', {})
|
|
old_relative_prefix = buildinfo.get('relative_prefix', new_relative_prefix)
|
|
rel = buildinfo.get('relative_rpaths')
|
|
# if the original relative prefix and new relative prefix differ the
|
|
# directory layout has changed and the buildcache cannot be installed
|
|
# if it was created with relative rpaths
|
|
info = 'old relative prefix %s\nnew relative prefix %s\nrelative rpaths %s'
|
|
tty.debug(info %
|
|
(old_relative_prefix, new_relative_prefix, rel))
|
|
# if (old_relative_prefix != new_relative_prefix and (rel)):
|
|
# shutil.rmtree(tmpdir)
|
|
# msg = "Package tarball was created from an install "
|
|
# msg += "prefix with a different directory layout. "
|
|
# msg += "It cannot be relocated because it "
|
|
# msg += "uses relative rpaths."
|
|
# raise NewLayoutException(msg)
|
|
|
|
# extract the tarball in a temp directory
|
|
with closing(tarfile.open(tarfile_path, 'r')) as tar:
|
|
tar.extractall(path=tmpdir)
|
|
# get the parent directory of the file .spack/binary_distribution
|
|
# this should the directory unpacked from the tarball whose
|
|
# name is unknown because the prefix naming is unknown
|
|
bindist_file = glob.glob('%s/*/.spack/binary_distribution' % tmpdir)[0]
|
|
workdir = re.sub('/.spack/binary_distribution$', '', bindist_file)
|
|
tty.debug('workdir %s' % workdir)
|
|
# install_tree copies hardlinks
|
|
# create a temporary tarfile from prefix and exract it to workdir
|
|
# tarfile preserves hardlinks
|
|
temp_tarfile_name = tarball_name(spec, '.tar')
|
|
temp_tarfile_path = os.path.join(tmpdir, temp_tarfile_name)
|
|
with closing(tarfile.open(temp_tarfile_path, 'w')) as tar:
|
|
tar.add(name='%s' % workdir,
|
|
arcname='.')
|
|
with closing(tarfile.open(temp_tarfile_path, 'r')) as tar:
|
|
tar.extractall(spec.prefix)
|
|
os.remove(temp_tarfile_path)
|
|
|
|
# cleanup
|
|
os.remove(tarfile_path)
|
|
os.remove(specfile_path)
|
|
|
|
try:
|
|
relocate_package(spec, allow_root)
|
|
except Exception as e:
|
|
shutil.rmtree(spec.prefix)
|
|
raise e
|
|
else:
|
|
manifest_file = os.path.join(spec.prefix,
|
|
spack.store.layout.metadata_dir,
|
|
spack.store.layout.manifest_file_name)
|
|
if not os.path.exists(manifest_file):
|
|
spec_id = spec.format('{name}/{hash:7}')
|
|
tty.warn('No manifest file in tarball for spec %s' % spec_id)
|
|
finally:
|
|
shutil.rmtree(tmpdir)
|
|
if os.path.exists(filename):
|
|
os.remove(filename)
|
|
|
|
|
|
# Internal cache for downloaded specs
|
|
_cached_specs = set()
|
|
|
|
|
|
def try_download_specs(urls=None, force=False):
|
|
'''
|
|
Try to download the urls and cache them
|
|
'''
|
|
global _cached_specs
|
|
if urls is None:
|
|
return {}
|
|
for link in urls:
|
|
with Stage(link, name="build_cache", keep=True) as stage:
|
|
if force and os.path.exists(stage.save_filename):
|
|
os.remove(stage.save_filename)
|
|
if not os.path.exists(stage.save_filename):
|
|
try:
|
|
stage.fetch()
|
|
except fs.FetchError:
|
|
continue
|
|
with open(stage.save_filename, 'r') as f:
|
|
# read the spec from the build cache file. All specs
|
|
# in build caches are concrete (as they are built) so
|
|
# we need to mark this spec concrete on read-in.
|
|
spec = Spec.from_yaml(f)
|
|
spec._mark_concrete()
|
|
_cached_specs.add(spec)
|
|
|
|
return _cached_specs
|
|
|
|
|
|
def get_spec(spec=None, force=False):
|
|
"""
|
|
Check if spec.yaml exists on mirrors and return it if it does
|
|
"""
|
|
global _cached_specs
|
|
urls = set()
|
|
if spec is None:
|
|
return {}
|
|
specfile_name = tarball_name(spec, '.spec.yaml')
|
|
|
|
if not spack.mirror.MirrorCollection():
|
|
tty.debug("No Spack mirrors are currently configured")
|
|
return {}
|
|
|
|
if _cached_specs and spec in _cached_specs:
|
|
return _cached_specs
|
|
|
|
for mirror in spack.mirror.MirrorCollection().values():
|
|
fetch_url_build_cache = url_util.join(
|
|
mirror.fetch_url, _build_cache_relative_path)
|
|
|
|
mirror_dir = url_util.local_file_path(fetch_url_build_cache)
|
|
if mirror_dir:
|
|
tty.debug('Finding buildcaches in {0}'.format(mirror_dir))
|
|
link = url_util.join(fetch_url_build_cache, specfile_name)
|
|
urls.add(link)
|
|
|
|
else:
|
|
tty.debug('Finding buildcaches at {0}'
|
|
.format(url_util.format(fetch_url_build_cache)))
|
|
link = url_util.join(fetch_url_build_cache, specfile_name)
|
|
urls.add(link)
|
|
|
|
return try_download_specs(urls=urls, force=force)
|
|
|
|
|
|
def get_specs():
|
|
"""
|
|
Get spec.yaml's for build caches available on mirror
|
|
"""
|
|
global _cached_specs
|
|
|
|
if not spack.mirror.MirrorCollection():
|
|
tty.debug("No Spack mirrors are currently configured")
|
|
return {}
|
|
|
|
for mirror in spack.mirror.MirrorCollection().values():
|
|
fetch_url_build_cache = url_util.join(
|
|
mirror.fetch_url, _build_cache_relative_path)
|
|
|
|
tty.debug('Finding buildcaches at {0}'
|
|
.format(url_util.format(fetch_url_build_cache)))
|
|
|
|
index_url = url_util.join(fetch_url_build_cache, 'index.json')
|
|
|
|
try:
|
|
_, _, file_stream = web_util.read_from_url(
|
|
index_url, 'application/json')
|
|
index_object = codecs.getreader('utf-8')(file_stream).read()
|
|
except (URLError, web_util.SpackWebError) as url_err:
|
|
tty.debug('Failed to read index {0}'.format(index_url), url_err, 1)
|
|
# Continue on to the next mirror
|
|
continue
|
|
|
|
tmpdir = tempfile.mkdtemp()
|
|
index_file_path = os.path.join(tmpdir, 'index.json')
|
|
with open(index_file_path, 'w') as fd:
|
|
fd.write(index_object)
|
|
|
|
db_root_dir = os.path.join(tmpdir, 'db_root')
|
|
db = spack_db.Database(None, db_dir=db_root_dir,
|
|
enable_transaction_locking=False)
|
|
|
|
db._read_from_file(index_file_path)
|
|
spec_list = db.query_local(installed=False)
|
|
|
|
for indexed_spec in spec_list:
|
|
_cached_specs.add(indexed_spec)
|
|
|
|
return _cached_specs
|
|
|
|
|
|
def get_keys(install=False, trust=False, force=False, mirrors=None):
|
|
"""Get pgp public keys available on mirror with suffix .pub
|
|
"""
|
|
mirror_collection = (mirrors or spack.mirror.MirrorCollection())
|
|
|
|
if not mirror_collection:
|
|
tty.die("Please add a spack mirror to allow " +
|
|
"download of build caches.")
|
|
|
|
for mirror in mirror_collection.values():
|
|
fetch_url = mirror.fetch_url
|
|
keys_url = url_util.join(fetch_url,
|
|
_build_cache_relative_path,
|
|
_build_cache_keys_relative_path)
|
|
keys_index = url_util.join(keys_url, 'index.json')
|
|
|
|
tty.debug('Finding public keys in {0}'.format(
|
|
url_util.format(fetch_url)))
|
|
|
|
try:
|
|
_, _, json_file = web_util.read_from_url(keys_index)
|
|
json_index = sjson.load(codecs.getreader('utf-8')(json_file))
|
|
except (URLError, web_util.SpackWebError) as url_err:
|
|
if web_util.url_exists(keys_index):
|
|
err_msg = [
|
|
'Unable to find public keys in {0},',
|
|
' caught exception attempting to read from {1}.',
|
|
]
|
|
|
|
tty.error(''.join(err_msg).format(
|
|
url_util.format(fetch_url),
|
|
url_util.format(keys_index)))
|
|
|
|
tty.debug(url_err)
|
|
|
|
continue
|
|
|
|
for fingerprint, key_attributes in json_index['keys'].items():
|
|
link = os.path.join(keys_url, fingerprint + '.pub')
|
|
|
|
with Stage(link, name="build_cache", keep=True) as stage:
|
|
if os.path.exists(stage.save_filename) and force:
|
|
os.remove(stage.save_filename)
|
|
if not os.path.exists(stage.save_filename):
|
|
try:
|
|
stage.fetch()
|
|
except fs.FetchError:
|
|
continue
|
|
|
|
tty.debug('Found key {0}'.format(fingerprint))
|
|
if install:
|
|
if trust:
|
|
spack.util.gpg.trust(stage.save_filename)
|
|
tty.debug('Added this key to trusted keys.')
|
|
else:
|
|
tty.debug('Will not add this key to trusted keys.'
|
|
'Use -t to install all downloaded keys')
|
|
|
|
|
|
def push_keys(*mirrors, **kwargs):
|
|
"""
|
|
Upload pgp public keys to the given mirrors
|
|
"""
|
|
keys = kwargs.get('keys')
|
|
regenerate_index = kwargs.get('regenerate_index', False)
|
|
tmpdir = kwargs.get('tmpdir')
|
|
remove_tmpdir = False
|
|
|
|
keys = spack.util.gpg.public_keys(*(keys or []))
|
|
|
|
try:
|
|
for mirror in mirrors:
|
|
push_url = getattr(mirror, 'push_url', mirror)
|
|
keys_url = url_util.join(push_url,
|
|
_build_cache_relative_path,
|
|
_build_cache_keys_relative_path)
|
|
keys_local = url_util.local_file_path(keys_url)
|
|
|
|
verb = 'Writing' if keys_local else 'Uploading'
|
|
tty.debug('{0} public keys to {1}'.format(
|
|
verb, url_util.format(push_url)))
|
|
|
|
if keys_local: # mirror is local, don't bother with the tmpdir
|
|
prefix = keys_local
|
|
mkdirp(keys_local)
|
|
else:
|
|
# A tmp dir is created for the first mirror that is non-local.
|
|
# On the off-hand chance that all the mirrors are local, then
|
|
# we can avoid the need to create a tmp dir.
|
|
if tmpdir is None:
|
|
tmpdir = tempfile.mkdtemp()
|
|
remove_tmpdir = True
|
|
prefix = tmpdir
|
|
|
|
for fingerprint in keys:
|
|
tty.debug(' ' + fingerprint)
|
|
filename = fingerprint + '.pub'
|
|
|
|
export_target = os.path.join(prefix, filename)
|
|
spack.util.gpg.export_keys(export_target, fingerprint)
|
|
|
|
# If mirror is local, the above export writes directly to the
|
|
# mirror (export_target points directly to the mirror).
|
|
#
|
|
# If not, then export_target is a tmpfile that needs to be
|
|
# uploaded to the mirror.
|
|
if not keys_local:
|
|
spack.util.web.push_to_url(
|
|
export_target,
|
|
url_util.join(keys_url, filename),
|
|
keep_original=False)
|
|
|
|
if regenerate_index:
|
|
if keys_local:
|
|
generate_key_index(keys_url)
|
|
else:
|
|
generate_key_index(keys_url, tmpdir)
|
|
finally:
|
|
if remove_tmpdir:
|
|
shutil.rmtree(tmpdir)
|
|
|
|
|
|
def needs_rebuild(spec, mirror_url, rebuild_on_errors=False):
|
|
if not spec.concrete:
|
|
raise ValueError('spec must be concrete to check against mirror')
|
|
|
|
pkg_name = spec.name
|
|
pkg_version = spec.version
|
|
|
|
pkg_hash = spec.dag_hash()
|
|
pkg_full_hash = spec.full_hash()
|
|
|
|
tty.debug('Checking {0}-{1}, dag_hash = {2}, full_hash = {3}'.format(
|
|
pkg_name, pkg_version, pkg_hash, pkg_full_hash))
|
|
tty.debug(spec.tree())
|
|
|
|
# Try to retrieve the .spec.yaml directly, based on the known
|
|
# format of the name, in order to determine if the package
|
|
# needs to be rebuilt.
|
|
cache_prefix = build_cache_prefix(mirror_url)
|
|
spec_yaml_file_name = tarball_name(spec, '.spec.yaml')
|
|
file_path = os.path.join(cache_prefix, spec_yaml_file_name)
|
|
|
|
result_of_error = 'Package ({0}) will {1}be rebuilt'.format(
|
|
spec.short_spec, '' if rebuild_on_errors else 'not ')
|
|
|
|
try:
|
|
_, _, yaml_file = web_util.read_from_url(file_path)
|
|
yaml_contents = codecs.getreader('utf-8')(yaml_file).read()
|
|
except (URLError, web_util.SpackWebError) as url_err:
|
|
err_msg = [
|
|
'Unable to determine whether {0} needs rebuilding,',
|
|
' caught exception attempting to read from {1}.',
|
|
]
|
|
tty.error(''.join(err_msg).format(spec.short_spec, file_path))
|
|
tty.debug(url_err)
|
|
tty.warn(result_of_error)
|
|
return rebuild_on_errors
|
|
|
|
if not yaml_contents:
|
|
tty.error('Reading {0} returned nothing'.format(file_path))
|
|
tty.warn(result_of_error)
|
|
return rebuild_on_errors
|
|
|
|
spec_yaml = syaml.load(yaml_contents)
|
|
|
|
# If either the full_hash didn't exist in the .spec.yaml file, or it
|
|
# did, but didn't match the one we computed locally, then we should
|
|
# just rebuild. This can be simplified once the dag_hash and the
|
|
# full_hash become the same thing.
|
|
if ('full_hash' not in spec_yaml or
|
|
spec_yaml['full_hash'] != pkg_full_hash):
|
|
if 'full_hash' in spec_yaml:
|
|
reason = 'hash mismatch, remote = {0}, local = {1}'.format(
|
|
spec_yaml['full_hash'], pkg_full_hash)
|
|
else:
|
|
reason = 'full_hash was missing from remote spec.yaml'
|
|
tty.msg('Rebuilding {0}, reason: {1}'.format(
|
|
spec.short_spec, reason))
|
|
tty.msg(spec.tree())
|
|
return True
|
|
|
|
return False
|
|
|
|
|
|
def check_specs_against_mirrors(mirrors, specs, output_file=None,
|
|
rebuild_on_errors=False):
|
|
"""Check all the given specs against buildcaches on the given mirrors and
|
|
determine if any of the specs need to be rebuilt. Reasons for needing to
|
|
rebuild include binary cache for spec isn't present on a mirror, or it is
|
|
present but the full_hash has changed since last time spec was built.
|
|
|
|
Arguments:
|
|
mirrors (dict): Mirrors to check against
|
|
specs (iterable): Specs to check against mirrors
|
|
output_file (string): Path to output file to be written. If provided,
|
|
mirrors with missing or out-of-date specs will be formatted as a
|
|
JSON object and written to this file.
|
|
rebuild_on_errors (boolean): Treat any errors encountered while
|
|
checking specs as a signal to rebuild package.
|
|
|
|
Returns: 1 if any spec was out-of-date on any mirror, 0 otherwise.
|
|
|
|
"""
|
|
rebuilds = {}
|
|
for mirror in spack.mirror.MirrorCollection(mirrors).values():
|
|
tty.debug('Checking for built specs at {0}'.format(mirror.fetch_url))
|
|
|
|
rebuild_list = []
|
|
|
|
for spec in specs:
|
|
if needs_rebuild(spec, mirror.fetch_url, rebuild_on_errors):
|
|
rebuild_list.append({
|
|
'short_spec': spec.short_spec,
|
|
'hash': spec.dag_hash()
|
|
})
|
|
|
|
if rebuild_list:
|
|
rebuilds[mirror.fetch_url] = {
|
|
'mirrorName': mirror.name,
|
|
'mirrorUrl': mirror.fetch_url,
|
|
'rebuildSpecs': rebuild_list
|
|
}
|
|
|
|
if output_file:
|
|
with open(output_file, 'w') as outf:
|
|
outf.write(json.dumps(rebuilds))
|
|
|
|
return 1 if rebuilds else 0
|
|
|
|
|
|
def _download_buildcache_entry(mirror_root, descriptions):
|
|
for description in descriptions:
|
|
description_url = os.path.join(mirror_root, description['url'])
|
|
path = description['path']
|
|
fail_if_missing = description['required']
|
|
|
|
mkdirp(path)
|
|
|
|
stage = Stage(
|
|
description_url, name="build_cache", path=path, keep=True)
|
|
|
|
try:
|
|
stage.fetch()
|
|
except fs.FetchError as e:
|
|
tty.debug(e)
|
|
if fail_if_missing:
|
|
tty.error('Failed to download required url {0}'.format(
|
|
description_url))
|
|
return False
|
|
|
|
return True
|
|
|
|
|
|
def download_buildcache_entry(file_descriptions, mirror_url=None):
|
|
if not mirror_url and not spack.mirror.MirrorCollection():
|
|
tty.die("Please provide or add a spack mirror to allow " +
|
|
"download of buildcache entries.")
|
|
|
|
if mirror_url:
|
|
mirror_root = os.path.join(
|
|
mirror_url, _build_cache_relative_path)
|
|
return _download_buildcache_entry(mirror_root, file_descriptions)
|
|
|
|
for mirror in spack.mirror.MirrorCollection().values():
|
|
mirror_root = os.path.join(
|
|
mirror.fetch_url,
|
|
_build_cache_relative_path)
|
|
|
|
if _download_buildcache_entry(mirror_root, file_descriptions):
|
|
return True
|
|
else:
|
|
continue
|
|
|
|
return False
|