7b9f8abce5
Add language dependencies `c`, `cxx`, and `fortran`. These `depends_on` statements are auto-generated based on file extensions found in source tarballs/zipfiles. The `# generated` comment can be removed by package maintainers after validating correctness.
31 lines
1.1 KiB
Python
31 lines
1.1 KiB
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Scallop(AutotoolsPackage):
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"""Scallop is a reference-based transcriptome assembler for RNA-seq"""
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homepage = "https://github.com/Kingsford-Group/scallop"
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url = "https://github.com/Kingsford-Group/scallop/releases/download/v0.10.5/scallop-0.10.5.tar.gz"
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license("BSD-3-Clause")
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version("0.10.5", sha256="b09e3c61f1b3b1da2a96d9d8429d80326a3bb14f5fe6af9b5e87570d4b86937a")
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version("0.10.3", sha256="04eb3ab27ed8c7ae38e1780d6b2af16b6a2c01807ffafd59e819d33bfeff58a0")
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depends_on("cxx", type="build") # generated
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depends_on("clp")
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depends_on("boost")
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depends_on("htslib@1.5:")
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def configure_args(self):
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return [
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"--with-clp={0}".format(self.spec["clp"].prefix),
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"--with-htslib={0}".format(self.spec["htslib"].prefix),
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"--with-boost={0}".format(self.spec["boost"].prefix),
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]
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