c2e1a12cdf
Add a new check to `spack audit` to scan and verify that version constraints may be satisfied Modifications: - [x] Add a new check to `spack audit` to scan and verify that version constraints may be satisfied by some version declared in the built-in repository - [x] Fix issues found by CI Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
34 lines
1.3 KiB
Python
34 lines
1.3 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class PyPysam(PythonPackage):
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"""A python module for reading, manipulating and writing genomic data
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sets."""
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homepage = "https://github.com/pysam-developers/pysam"
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pypi = "pysam/pysam-0.14.1.tar.gz"
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version('0.15.3', sha256='a98dd0a164aa664b1ab30a36f653752f00e93c13deeb66868597f4b2a30f7265')
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version('0.15.2', sha256='d049efd91ed5b1af515aa30280bc9cb46a92ddd15d546c9b21ee68a6ed4055d9')
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version('0.15.1', sha256='658421124c2f3de1b7445e03ca8413df0077f67ea9980abdaab0d1b5f7a8936f')
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version('0.14.1', sha256='2e86f5228429d08975c8adb9030296699012a8deba8ba26cbfc09b374f792c97')
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version('0.7.7', sha256='c9f3018482eec99ee199dda3fdef2aa7424dde6574672a4c0d209a10985755cc')
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depends_on('py-setuptools', type='build')
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depends_on('py-cython@0.21:', when='@0.14:', type='build')
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depends_on('py-cython@0.17:', type='build')
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depends_on('curl')
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depends_on('bcftools')
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depends_on('htslib')
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depends_on('samtools')
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depends_on('htslib@:1.6', when='@:0.13')
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def setup_build_environment(self, env):
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env.set('LDFLAGS', self.spec['curl'].libs.search_flags)
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