52 lines
2.1 KiB
Python
52 lines
2.1 KiB
Python
##############################################################################
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# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class EaUtils(MakefilePackage):
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"""Command-line tools for processing biological sequencing data. Barcode
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demultiplexing, adapter trimming, etc. Primarily written to support an
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Illumina based pipeline - but should work with any FASTQs."""
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homepage = "http://expressionanalysis.github.io/ea-utils/"
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url = "https://github.com/ExpressionAnalysis/ea-utils/archive/1.04.807.tar.gz"
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version('1.04.807', '5972b9f712920603b7527f46c0063a09')
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depends_on('subversion')
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depends_on('zlib')
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depends_on('gsl')
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depends_on('bamtools')
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# perl module required for make check, which is included in the default
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# target
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depends_on('perl', type='build')
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build_directory = 'clipper'
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def edit(self, spec, prefix):
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with working_dir('clipper'):
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makefile = FileFilter('Makefile')
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makefile.filter('/usr', prefix)
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