44 lines
1.8 KiB
Python
44 lines
1.8 KiB
Python
##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Salmon(CMakePackage):
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"""Salmon is a tool for quantifying the expression of transcripts using
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RNA-seq data."""
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homepage = "http://combine-lab.github.io/salmon/"
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url = "https://github.com/COMBINE-lab/salmon/archive/v0.8.2.tar.gz"
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version('0.9.1', '1277b8ed65d2c6982ed176a496a2a1e3')
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version('0.8.2', 'ee512697bc44b13661a16d4e14cf0a00')
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depends_on('tbb')
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depends_on('boost@:1.66.0')
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def cmake_args(self):
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args = ['-DBOOST_ROOT=%s' % self.spec['boost'].prefix]
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return args
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