c53541e448
* Bump samtools and hstlib to version 1.8. * rm .bak. * Bump bcftools to 1.8. * bcftools@1.8 depends on libzip.
52 lines
2.3 KiB
Python
52 lines
2.3 KiB
Python
##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Bcftools(AutotoolsPackage):
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"""BCFtools is a set of utilities that manipulate variant calls in the
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Variant Call Format (VCF) and its binary counterpart BCF. All
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commands work transparently with both VCFs and BCFs, both
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uncompressed and BGZF-compressed."""
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homepage = "http://samtools.github.io/bcftools/"
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url = "https://github.com/samtools/bcftools/releases/download/1.3.1/bcftools-1.3.1.tar.bz2"
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version('1.8', 'ba6c2fb7eb6dcb208f00ab8b22df475c')
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version('1.7', 'c972db68d17af9da3a18963f4e5aeca8')
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version('1.6', 'c4dba1e8cb55db0f94b4c47724b4f9fa')
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version('1.4', '50ccf0a073bd70e99cdb3c8be830416e')
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version('1.3.1', '575001e9fca37cab0c7a7287ad4b1cdb')
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version('1.2', '8044bed8fce62f7072fc6835420f0906')
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depends_on('libzip', when='@1.8:')
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depends_on('htslib@1.8', when='@1.8')
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depends_on('htslib@1.7', when='@1.7')
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depends_on('htslib@1.6', when='@1.6')
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depends_on('htslib@1.4', when='@1.4')
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depends_on('htslib@1.3.1', when='@1.3.1')
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depends_on('htslib@1.2', when='@1.2')
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