48420d0c24
* Add py-wub, with supporting fixes - add py-wub - add py-pycmd because py-wub needs it - update py-statsmodels, which needs at least v0.9.0 to work with python3.7 because cython. * Update based on Adam's comments * Fix dependency types for py-six in py-wub * statsmodels tests fail, update comment w/ Issue # The statsmodels tests weren't run in the previous version of the package. If I enable them, the fail. Update the package comment with the statsmodels issue I opened to track the problem: https://github.com/statsmodels/statsmodels/issues/6263 * Update dependency types in py-wub/package.py * flake8 cleanups * Make statsmodels tests work - need to use patsy@0.5.1: - need to run the tests from within the build/lib* dir
32 lines
1.3 KiB
Python
32 lines
1.3 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class PyWub(PythonPackage):
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"""Bioinformatics tools and a software library developed by the Oxford
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Nanopore Technologies Applications group.
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"""
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homepage = "https://github.com/nanoporetech/wub"
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url = "https://github.com/nanoporetech/wub/archive/v0.4.0.tar.gz"
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version('0.4.0', sha256='1526aa392bccac71b872211c45f5b403ad3d55f5762e0ed34ff9086bc1dab6fd')
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depends_on('py-six', type=('build', 'run'))
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depends_on('py-pytest', type=('build', 'run', 'test'))
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depends_on('py-pycmd', type=('build', 'run', 'test'))
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depends_on('py-biopython', type=('build', 'run'))
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depends_on('py-numpy', type=('build', 'run', 'test'))
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depends_on('py-matplotlib', type=('build', 'run'))
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depends_on('py-seaborn', type=('build', 'run'))
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depends_on('py-editdistance', type=('build', 'run', 'test'))
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depends_on('py-pandas@0.20.2:', type=('build', 'run'))
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depends_on('py-pysam', type=('build', 'run'))
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depends_on('py-tqdm', type=('build', 'run'))
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depends_on('py-statsmodels', type=('build', 'run'))
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depends_on('py-setuptools', type='build')
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