042fcc3575
* Add bioc attribute to r-do-db
* add version 1.38.1 to bioconductor package r-annotationforge
* add version 1.30.4 to bioconductor package r-biocparallel
* add version 2.64.1 to bioconductor package r-biostrings
* add version 4.4.4 to bioconductor package r-clusterprofiler
* add version 2.12.1 to bioconductor package r-complexheatmap
* add version 1.18.1 to bioconductor package r-delayedmatrixstats
* add version 3.22.1 to bioconductor package r-dose
* add version 3.38.4 to bioconductor package r-edger
* add version 1.16.2 to bioconductor package r-enrichplot
* add version 2.20.2 to bioconductor package r-ensembldb
* add version 1.32.4 to bioconductor package r-genomeinfodb
* add version 1.32.1 to bioconductor package r-genomicalignments
* add version 1.48.4 to bioconductor package r-genomicfeatures
* add version 1.44.1 to bioconductor package r-ggbio
* add version 3.4.4 to bioconductor package r-ggtree
* add version 1.24.2 to bioconductor package r-hdf5array
* add version 2.30.1 to bioconductor package r-iranges
* add version 1.36.3 to bioconductor package r-keggrest
* add version 3.52.4 to bioconductor package r-limma
* add version 1.8.1 to bioconductor package r-matrixgenerics
* update r-org-hs-eg-db
* add version 1.38.1 to bioconductor package r-organismdbi
* add version 1.36.1 to bioconductor package r-pathview
* add version 1.56.1 to bioconductor package r-rtracklayer
* add version 1.4.1 to bioconductor package r-scaledmatrix
* add version 1.24.1 to bioconductor package r-scran
* add version 1.6.3 to bioconductor package r-scuttle
* add version 1.18.1 to bioconductor package r-singlecellexperiment
* add version 1.20.2 to bioconductor package r-treeio
* Revert "Add bioc attribute to r-do-db"
This reverts commit 36be5c6072.
* Fix quotes on versions
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
33 lines
1.4 KiB
Python
33 lines
1.4 KiB
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class RBiocparallel(RPackage):
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"""Bioconductor facilities for parallel evaluation.
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This package provides modified versions and novel implementation of
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functions for parallel evaluation, tailored to use with Bioconductor
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objects."""
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bioc = "BiocParallel"
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version("1.30.4", commit="1229ebe9f6d8305f9f61e562464f83f9ba86e699")
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version("1.30.2", commit="e7e109f7a94dbfbc50f926be030c7ad8c1a053db")
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version("1.28.3", commit="2f9d88ad83659939e7911d49c2d24d2cd599c7cc")
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version("1.24.1", commit="f713caa4314ec0ddeba7fe0eb599ad417efb413f")
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version("1.18.1", commit="348264af782d7dcd41a1879400f348f836767f6e")
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version("1.16.6", commit="7f7a54c47f4949b600b9fd568289a519496bc4d4")
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version("1.14.2", commit="1d5a44960b19e9dbbca04c7290c8c58b0a7fc299")
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version("1.12.0", commit="2143a9addceed0151a27b95c70aadd2add5cbace")
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version("1.10.1", commit="a76c58cf99fd585ba5ea33065649e68f1afe0a7d")
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depends_on("r@3.5.0:", type=("build", "run"), when="@1.28.3:")
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depends_on("r-futile-logger", type=("build", "run"))
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depends_on("r-snow", type=("build", "run"))
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depends_on("r-codetools", type=("build", "run"), when="@1.30.4:")
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depends_on("r-bh", type=("build", "run"), when="@1.12.0:")
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