620 lines
25 KiB
Python
620 lines
25 KiB
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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import glob
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import os
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import shutil
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import socket
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from os.path import join as pjoin
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from spack.package import *
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from spack.util.executable import which_string
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def get_spec_path(spec, package_name, path_replacements={}, use_bin=False):
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"""Extracts the prefix path for the given spack package
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path_replacements is a dictionary with string replacements for the path.
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"""
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if not use_bin:
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path = spec[package_name].prefix
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else:
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path = spec[package_name].prefix.bin
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path = os.path.realpath(path)
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for key in path_replacements:
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path = path.replace(key, path_replacements[key])
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return path
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class Axom(CachedCMakePackage, CudaPackage, ROCmPackage):
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"""Axom provides a robust, flexible software infrastructure for the development
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of multi-physics applications and computational tools."""
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maintainers("white238")
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homepage = "https://github.com/LLNL/axom"
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git = "https://github.com/LLNL/axom.git"
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tags = ["radiuss"]
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license("BSD-3-Clause")
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version("main", branch="main")
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version("develop", branch="develop")
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version("0.8.1", tag="v0.8.1", commit="0da8a5b1be596887158ac2fcd321524ba5259e15")
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version("0.8.0", tag="v0.8.0", commit="71fab3262eb7e1aa44a04c21d072b77f06362f7b")
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version("0.7.0", tag="v0.7.0", commit="ea5158191181c137117ae37959879bdc8b107f35")
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version("0.6.1", tag="v0.6.1", commit="ee240d3963d7879ae0e9c392902195bd7b04e37d")
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version("0.6.0", tag="v0.6.0", commit="65287dc00bc7c271a08cb86c632f5909c30e3506")
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version("0.5.0", tag="v0.5.0", commit="db137349b3e28617c3e0570dbd18e4a91654da98")
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version("0.4.0", tag="v0.4.0", commit="38c0d7495ece35a30fca5f5b578b8f9d54346bd2")
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version("0.3.3", tag="v0.3.3", commit="f0539ef0525469ffda054d86144f310c15b4f9e0")
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version("0.3.2", tag="v0.3.2", commit="c446b496e20e6118b8cba7e80f1f84c76a49e463")
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version("0.3.1", tag="v0.3.1", commit="cbefc0457a229d8acfb70622360d0667e90e50a2")
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version("0.3.0", tag="v0.3.0", commit="20068ccab4b4f70055918b4f17960ec3ed6dbce8")
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version("0.2.9", tag="v0.2.9", commit="9e9a54ede3326817c05f35922738516e43b5ec3d")
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# https://github.com/spack/spack/issues/31829
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patch("examples-oneapi.patch", when="@0.6.1 +examples %oneapi")
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patch("scr_examples_gtest.patch", when="@0.6.0:0.6.1")
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patch("umpire_camp_blt_targets.patch", when="@=0.8.0 ^umpire@2023.06.0")
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root_cmakelists_dir = "src"
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# -----------------------------------------------------------------------
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# Variants
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# -----------------------------------------------------------------------
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variant("shared", default=True, description="Enable build of shared libraries")
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variant("examples", default=True, description="Build examples")
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variant("tools", default=True, description="Build tools")
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# Hard requirement after Axom 0.6.1
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variant("cpp14", default=True, description="Build with C++14 support")
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variant("fortran", default=True, description="Build with Fortran support")
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variant("python", default=False, description="Build python support")
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variant("mpi", default=True, description="Build MPI support")
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variant("openmp", default=True, description="Turn on OpenMP support.")
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variant("mfem", default=False, description="Build with mfem")
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variant("hdf5", default=True, description="Build with hdf5")
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variant("lua", default=True, description="Build with Lua")
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variant("scr", default=False, description="Build with SCR")
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variant("umpire", default=True, description="Build with umpire")
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variant("raja", default=True, description="Build with raja")
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varmsg = "Build development tools (such as Sphinx, Doxygen, etc...)"
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variant("devtools", default=False, description=varmsg)
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# -----------------------------------------------------------------------
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# Dependencies
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# -----------------------------------------------------------------------
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# Basics
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depends_on("cmake@3.14:", type="build")
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depends_on("cmake@3.18:", type="build", when="@0.7.0:")
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depends_on("cmake@3.21:", type="build", when="+rocm")
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depends_on("blt", type="build")
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depends_on("blt@0.5.1:", type="build", when="@0.6.1:")
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depends_on("mpi", when="+mpi")
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# Libraries
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# Forward variants to Conduit
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for _var in ["fortran", "hdf5", "mpi", "python"]:
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depends_on("conduit+{0}".format(_var), when="+{0}".format(_var))
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depends_on("conduit~{0}".format(_var), when="~{0}".format(_var))
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depends_on("hdf5", when="+hdf5")
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depends_on("lua", when="+lua")
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depends_on("scr", when="+scr")
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depends_on("scr~fortran", when="+scr~fortran")
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with when("+umpire"):
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depends_on("umpire@2022.03.0:", when="@0.7.0:")
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depends_on("umpire@6.0.0", when="@0.6.0")
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depends_on("umpire@5:5.0.1", when="@:0.5.0")
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depends_on("umpire +openmp", when="+openmp")
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with when("+raja"):
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depends_on("raja@2022.03.0:", when="@0.7.0:")
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depends_on("raja@0.14.0", when="@0.6.0")
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depends_on("raja@:0.13.0", when="@:0.5.0")
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depends_on("raja~openmp", when="~openmp")
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depends_on("raja+openmp", when="+openmp")
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for val in CudaPackage.cuda_arch_values:
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raja_cuda = "raja +cuda cuda_arch={0}".format(val)
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umpire_cuda = "umpire +cuda cuda_arch={0}".format(val)
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depends_on(raja_cuda, when="+{0}".format(raja_cuda))
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depends_on(umpire_cuda, when="+{0}".format(umpire_cuda))
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for val in ROCmPackage.amdgpu_targets:
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raja_rocm = "raja +rocm amdgpu_target={0}".format(val)
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umpire_rocm = "umpire +rocm amdgpu_target={0}".format(val)
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depends_on(raja_rocm, when="+{0}".format(raja_rocm))
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depends_on(umpire_rocm, when="+{0}".format(umpire_rocm))
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depends_on("rocprim", when="+rocm")
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with when("+mfem"):
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depends_on("mfem+mpi", when="+mpi")
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depends_on("mfem~mpi", when="~mpi")
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depends_on("mfem@4.5.0:", when="@0.7.0:")
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depends_on("python", when="+python")
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# Devtools
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depends_on("cppcheck", when="+devtools")
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depends_on("doxygen", when="+devtools")
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depends_on("graphviz", when="+devtools")
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depends_on("python", when="+devtools")
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depends_on("py-sphinx", when="+devtools")
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depends_on("py-shroud", when="+devtools")
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depends_on("py-jsonschema", when="+devtools")
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depends_on("llvm+clang@10.0.0", when="+devtools", type="build")
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# Hard requirement after Axom 0.6.1
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conflicts("~cpp14", when="@0.6.2:")
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# Conduit's cmake config files moved and < 0.4.0 can't find it
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conflicts("^conduit@0.7.2:", when="@:0.4.0")
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# Sidre requires conduit_blueprint_mpi.hpp
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conflicts("^conduit@:0.6.0", when="@0.5.0:")
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conflicts("+openmp", when="+rocm")
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conflicts("+cuda", when="+rocm")
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conflicts("^blt@:0.3.6", when="+rocm")
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def flag_handler(self, name, flags):
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if self.spec.satisfies("%cce") and name == "fflags":
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flags.append("-ef")
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if name in ("cflags", "cxxflags", "cppflags", "fflags"):
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return (None, None, None) # handled in the cmake cache
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return (flags, None, None)
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def _get_sys_type(self, spec):
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sys_type = spec.architecture
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# if on llnl systems, we can use the SYS_TYPE
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if "SYS_TYPE" in env:
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sys_type = env["SYS_TYPE"]
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return sys_type
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def is_fortran_compiler(self, compiler):
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if self.compiler.fc is not None and compiler in self.compiler.fc:
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return True
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return False
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@property
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def cache_name(self):
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hostname = socket.gethostname()
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if "SYS_TYPE" in env:
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# Are we on a LLNL system then strip node number
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hostname = hostname.rstrip("1234567890")
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special_case = ""
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if "+cuda" in self.spec:
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special_case += "_cuda"
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if "~fortran" in self.spec:
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special_case += "_nofortran"
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if "+rocm" in self.spec:
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special_case += "_hip"
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return "{0}-{1}-{2}@{3}{4}.cmake".format(
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hostname,
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self._get_sys_type(self.spec),
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self.spec.compiler.name,
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self.spec.compiler.version,
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special_case,
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)
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def initconfig_compiler_entries(self):
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spec = self.spec
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entries = super().initconfig_compiler_entries()
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if "+fortran" in spec:
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entries.append(cmake_cache_option("ENABLE_FORTRAN", True))
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if self.is_fortran_compiler("gfortran") and "clang" in self.compiler.cxx:
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libdir = pjoin(os.path.dirname(os.path.dirname(self.compiler.cxx)), "lib")
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flags = ""
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for _libpath in [libdir, libdir + "64"]:
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if os.path.exists(_libpath):
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if spec.satisfies("^cuda"):
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flags += " -Xlinker -rpath -Xlinker {0}".format(_libpath)
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else:
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flags += " -Wl,-rpath,{0}".format(_libpath)
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description = "Adds a missing libstdc++ rpath"
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if flags:
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entries.append(cmake_cache_string("BLT_EXE_LINKER_FLAGS", flags, description))
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else:
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entries.append(cmake_cache_option("ENABLE_FORTRAN", False))
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if "+cpp14" in spec and spec.satisfies("@:0.6.1"):
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entries.append(cmake_cache_string("BLT_CXX_STD", "c++14", ""))
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# Add optimization flag workaround for Debug builds with
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# cray compiler or newer HIP
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if "+rocm" in spec:
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if spec.satisfies("%cce") or spec.satisfies("%clang@16"):
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entries.append(cmake_cache_string("CMAKE_CXX_FLAGS_DEBUG", "-O1 -g -DNDEBUG"))
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return entries
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def initconfig_hardware_entries(self):
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spec = self.spec
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entries = super().initconfig_hardware_entries()
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if "+cuda" in spec:
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entries.append(cmake_cache_option("ENABLE_CUDA", True))
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entries.append(cmake_cache_option("CMAKE_CUDA_SEPARABLE_COMPILATION", True))
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entries.append(cmake_cache_option("AXOM_ENABLE_ANNOTATIONS", True))
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# CUDA_FLAGS
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cudaflags = "-restrict --expt-extended-lambda "
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# Pass through any cxxflags to the host compiler via nvcc's Xcompiler flag
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host_cxx_flags = spec.compiler_flags["cxxflags"]
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cudaflags += " ".join(["-Xcompiler=%s " % flag for flag in host_cxx_flags])
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if not spec.satisfies("cuda_arch=none"):
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cuda_arch = spec.variants["cuda_arch"].value[0]
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entries.append(cmake_cache_string("CMAKE_CUDA_ARCHITECTURES", cuda_arch))
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else:
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entries.append("# cuda_arch could not be determined\n\n")
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if spec.satisfies("^blt@:0.5.1"):
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# This is handled internally by BLT now
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if "+cpp14" in spec:
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cudaflags += " -std=c++14"
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else:
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cudaflags += " -std=c++11"
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entries.append(cmake_cache_string("CMAKE_CUDA_FLAGS", cudaflags))
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entries.append("# nvcc does not like gtest's 'pthreads' flag\n")
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entries.append(cmake_cache_option("gtest_disable_pthreads", True))
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if "+rocm" in spec:
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entries.append("#------------------{0}\n".format("-" * 60))
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entries.append("# Axom ROCm specifics\n")
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entries.append("#------------------{0}\n\n".format("-" * 60))
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entries.append(cmake_cache_option("ENABLE_HIP", True))
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hip_root = spec["hip"].prefix
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rocm_root = hip_root + "/.."
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# Fix blt_hip getting HIP_CLANG_INCLUDE_PATH-NOTFOUND bad include directory
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# TODO: verify that this is still needed and is indeed specific to LC
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if (
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self.spec.satisfies("%cce") or self.spec.satisfies("%clang")
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) and "toss_4" in self._get_sys_type(spec):
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# Set the patch version to 0 if not already
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clang_version = str(self.compiler.version)[:-1] + "0"
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hip_clang_include_path = (
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rocm_root + "/llvm/lib/clang/" + clang_version + "/include"
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)
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if os.path.isdir(hip_clang_include_path):
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entries.append(
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cmake_cache_path("HIP_CLANG_INCLUDE_PATH", hip_clang_include_path)
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)
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# Fixes for mpi for rocm until wrapper paths are fixed
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# These flags are already part of the wrapped compilers on TOSS4 systems
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hip_link_flags = ""
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if "+fortran" in spec and self.is_fortran_compiler("amdflang"):
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hip_link_flags += "-Wl,--disable-new-dtags "
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hip_link_flags += "-L{0}/../llvm/lib -L{0}/lib ".format(hip_root)
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hip_link_flags += "-Wl,-rpath,{0}/../llvm/lib:{0}/lib ".format(hip_root)
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hip_link_flags += "-lpgmath -lflang -lflangrti -lompstub -lamdhip64 "
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# Remove extra link library for crayftn
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if "+fortran" in spec and self.is_fortran_compiler("crayftn"):
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entries.append(
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cmake_cache_string("BLT_CMAKE_IMPLICIT_LINK_LIBRARIES_EXCLUDE", "unwind")
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)
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# Additional libraries for TOSS4
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hip_link_flags += " -L{0}/../lib64 -Wl,-rpath,{0}/../lib64 ".format(hip_root)
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hip_link_flags += " -L{0}/../lib -Wl,-rpath,{0}/../lib ".format(hip_root)
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hip_link_flags += "-lamd_comgr -lhsa-runtime64 "
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entries.append(cmake_cache_string("CMAKE_EXE_LINKER_FLAGS", hip_link_flags))
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entries.append("#------------------{0}".format("-" * 30))
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entries.append("# Hardware Specifics")
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entries.append("#------------------{0}\n".format("-" * 30))
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# OpenMP
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entries.append(cmake_cache_option("ENABLE_OPENMP", spec.satisfies("+openmp")))
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# Enable death tests
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entries.append(
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cmake_cache_option(
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"ENABLE_GTEST_DEATH_TESTS", not spec.satisfies("+cuda target=ppc64le:")
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)
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)
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if "+fortran" in spec and self.is_fortran_compiler("xlf"):
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# Grab lib directory for the current fortran compiler
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libdir = pjoin(os.path.dirname(os.path.dirname(self.compiler.fc)), "lib")
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description = (
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"Adds a missing rpath for libraries " "associated with the fortran compiler"
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)
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linker_flags = "${BLT_EXE_LINKER_FLAGS} -Wl,-rpath," + libdir
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entries.append(cmake_cache_string("BLT_EXE_LINKER_FLAGS", linker_flags, description))
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if "+shared" in spec:
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linker_flags = "${CMAKE_SHARED_LINKER_FLAGS} -Wl,-rpath," + libdir
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entries.append(
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cmake_cache_string("CMAKE_SHARED_LINKER_FLAGS", linker_flags, description)
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)
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description = "Converts C-style comments to Fortran style in preprocessed files"
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entries.append(
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cmake_cache_string(
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"BLT_FORTRAN_FLAGS", "-WF,-C! -qxlf2003=polymorphic", description
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)
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)
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if (
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"+openmp" in spec
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and "clang" in self.compiler.cxx
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and "+fortran" in spec
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and self.is_fortran_compiler("xlf")
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):
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openmp_gen_exp = (
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"$<$<NOT:$<COMPILE_LANGUAGE:Fortran>>:"
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"-fopenmp=libomp>;$<$<COMPILE_LANGUAGE:"
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"Fortran>:-qsmp=omp>"
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)
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description = "Different OpenMP linker flag between CXX and Fortran"
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entries.append(
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cmake_cache_string("BLT_OPENMP_LINK_FLAGS", openmp_gen_exp, description)
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)
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if spec.satisfies("target=ppc64le:"):
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# Fix for working around CMake adding implicit link directories
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# returned by the BlueOS compilers to link executables with
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# non-system default stdlib
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_roots = ["/usr/tce/packages/gcc/gcc-4.9.3", "/usr/tce/packages/gcc/gcc-4.9.3/gnu"]
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_subdirs = ["lib64", "lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3"]
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_existing_paths = []
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for root in _roots:
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for subdir in _subdirs:
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_curr_path = pjoin(root, subdir)
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if os.path.exists(_curr_path):
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_existing_paths.append(_curr_path)
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if _existing_paths:
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entries.append(
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cmake_cache_string(
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"BLT_CMAKE_IMPLICIT_LINK_DIRECTORIES_EXCLUDE", ";".join(_existing_paths)
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)
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)
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return entries
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def initconfig_mpi_entries(self):
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spec = self.spec
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entries = super().initconfig_mpi_entries()
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if "+mpi" in spec:
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entries.append(cmake_cache_option("ENABLE_MPI", True))
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if spec["mpi"].name == "spectrum-mpi":
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entries.append(cmake_cache_string("BLT_MPI_COMMAND_APPEND", "mpibind"))
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# Replace /usr/bin/srun path with srun flux wrapper path on TOSS 4
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# TODO: Remove this logic by adding `using_flux` case in
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# spack/lib/spack/spack/build_systems/cached_cmake.py:196 and remove hard-coded
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# path to srun in same file.
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if "toss_4" in self._get_sys_type(spec):
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srun_wrapper = which_string("srun")
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mpi_exec_index = [
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index for index, entry in enumerate(entries) if "MPIEXEC_EXECUTABLE" in entry
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]
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del entries[mpi_exec_index[0]]
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entries.append(cmake_cache_path("MPIEXEC_EXECUTABLE", srun_wrapper))
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else:
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entries.append(cmake_cache_option("ENABLE_MPI", False))
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return entries
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def find_path_replacement(self, path1, path2, path_replacements, name, entries):
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root = os.path.commonprefix([path1, path2])
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if root.endswith(os.path.sep):
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root = root[: -len(os.path.sep)]
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if root:
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path_replacements[root] = "${" + name + "}"
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entries.append(cmake_cache_path(name, root))
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def initconfig_package_entries(self):
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spec = self.spec
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entries = []
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path_replacements = {}
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# TPL locations
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entries.append("#------------------{0}".format("-" * 60))
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entries.append("# TPLs")
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entries.append("#------------------{0}\n".format("-" * 60))
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# Try to find the common prefix of the TPL directory.
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# If found, we will use this in the TPL paths
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path1 = os.path.realpath(spec["conduit"].prefix)
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path2 = os.path.realpath(self.prefix)
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self.find_path_replacement(path1, path2, path_replacements, "TPL_ROOT", entries)
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conduit_dir = get_spec_path(spec, "conduit", path_replacements)
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entries.append(cmake_cache_path("CONDUIT_DIR", conduit_dir))
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# optional tpls
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for dep in ("mfem", "hdf5", "lua", "raja", "umpire"):
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if "+%s" % dep in spec:
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dep_dir = get_spec_path(spec, dep, path_replacements)
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entries.append(cmake_cache_path("%s_DIR" % dep.upper(), dep_dir))
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else:
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entries.append("# %s not built\n" % dep.upper())
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if "+umpire" in spec and spec.satisfies("^camp"):
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dep_dir = get_spec_path(spec, "camp", path_replacements)
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entries.append(cmake_cache_path("CAMP_DIR", dep_dir))
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# SCR does not export it's targets so we need to pull in its dependencies
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if "+scr" in spec:
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dep_dir = get_spec_path(spec, "scr", path_replacements)
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entries.append(cmake_cache_path("SCR_DIR", dep_dir))
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# scr's dependencies
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scr_deps = (
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"kvtree",
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"dtcmp",
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"spath",
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"axl",
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"lwgrp",
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"er",
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"rankstr",
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"redset",
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"shuffile",
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"libyogrt",
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)
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for dep in scr_deps:
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if spec.satisfies("^{0}".format(dep)):
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dep_dir = get_spec_path(spec, dep, path_replacements)
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entries.append(cmake_cache_path("%s_DIR" % dep.upper(), dep_dir))
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else:
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entries.append("# scr not built\n")
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##################################
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# Devtools
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##################################
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entries.append("#------------------{0}".format("-" * 60))
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entries.append("# Devtools")
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entries.append("#------------------{0}\n".format("-" * 60))
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# Add common prefix to path replacement list
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if "+devtools" in spec:
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# Grab common devtools root and strip the trailing slash
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path1 = os.path.realpath(spec["cppcheck"].prefix)
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path2 = os.path.realpath(spec["doxygen"].prefix)
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self.find_path_replacement(path1, path2, path_replacements, "DEVTOOLS_ROOT", entries)
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if "+devtools" in spec and spec.satisfies("^llvm"):
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clang_fmt_path = spec["llvm"].prefix.bin.join("clang-format")
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entries.append(cmake_cache_path("CLANGFORMAT_EXECUTABLE", clang_fmt_path))
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else:
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entries.append("# ClangFormat disabled due to llvm and devtools not in spec\n")
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entries.append(cmake_cache_option("ENABLE_CLANGFORMAT", False))
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if "+python" in spec or "+devtools" in spec:
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python_path = os.path.realpath(spec["python"].command.path)
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for key in path_replacements:
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python_path = python_path.replace(key, path_replacements[key])
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entries.append(cmake_cache_path("PYTHON_EXECUTABLE", python_path))
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if spec.satisfies("^py-jsonschema"):
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jsonschema_dir = get_spec_path(spec, "py-jsonschema", path_replacements, use_bin=True)
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jsonschema_path = os.path.join(jsonschema_dir, "jsonschema")
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entries.append(cmake_cache_path("JSONSCHEMA_EXECUTABLE", jsonschema_path))
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enable_docs = spec.satisfies("^doxygen") or spec.satisfies("^py-sphinx")
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entries.append(cmake_cache_option("ENABLE_DOCS", enable_docs))
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if spec.satisfies("^py-sphinx"):
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sphinx_bin_dir = get_spec_path(spec, "py-sphinx", path_replacements, use_bin=True)
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entries.append(
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cmake_cache_path("SPHINX_EXECUTABLE", pjoin(sphinx_bin_dir, "sphinx-build"))
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)
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if spec.satisfies("^py-shroud"):
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shroud_bin_dir = get_spec_path(spec, "py-shroud", path_replacements, use_bin=True)
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entries.append(cmake_cache_path("SHROUD_EXECUTABLE", pjoin(shroud_bin_dir, "shroud")))
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for dep in ("cppcheck", "doxygen"):
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if spec.satisfies("^%s" % dep):
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dep_bin_dir = get_spec_path(spec, dep, path_replacements, use_bin=True)
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entries.append(
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cmake_cache_path("%s_EXECUTABLE" % dep.upper(), pjoin(dep_bin_dir, dep))
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)
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return entries
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def cmake_args(self):
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options = []
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options.append("-DBLT_SOURCE_DIR:PATH={0}".format(self.spec["blt"].prefix))
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if self.run_tests is False:
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options.append("-DENABLE_TESTS=OFF")
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else:
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options.append("-DENABLE_TESTS=ON")
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options.append(self.define_from_variant("BUILD_SHARED_LIBS", "shared"))
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options.append(self.define_from_variant("AXOM_ENABLE_EXAMPLES", "examples"))
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options.append(self.define_from_variant("AXOM_ENABLE_TOOLS", "tools"))
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return options
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def patch(self):
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if self.spec.satisfies("%cce"):
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filter_file(
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"PROPERTIES LINKER_LANGUAGE CXX",
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'PROPERTIES LINKER_LANGUAGE CXX \n LINK_FLAGS "-fopenmp"',
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"src/axom/quest/examples/CMakeLists.txt",
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)
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@run_after("build")
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@on_package_attributes(run_tests=True)
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def build_test(self):
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with working_dir(self.build_directory):
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print("Running Axom Unit Tests...")
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make("test")
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@run_after("install")
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@on_package_attributes(run_tests=True)
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def check_install(self):
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"""
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Checks the spack install of axom using axom's
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using-with-cmake example
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"""
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print("Checking Axom installation...")
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spec = self.spec
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install_prefix = spec.prefix
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example_src_dir = join_path(install_prefix, "examples", "axom", "using-with-cmake")
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example_build_dir = join_path(example_src_dir, "build")
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print("Checking using-with-cmake example...")
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with working_dir(example_build_dir, create=True):
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cmake_args = ["-C ../host-config.cmake", example_src_dir]
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cmake(*cmake_args)
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make()
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example = Executable("./example")
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example()
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print("Checking using-with-make example...")
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example_src_dir = join_path(install_prefix, "examples", "axom", "using-with-make")
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example_build_dir = join_path(example_src_dir, "build")
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example_files = glob.glob(join_path(example_src_dir, "*"))
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with working_dir(example_build_dir, create=True):
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for example_file in example_files:
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shutil.copy(example_file, ".")
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make("AXOM_DIR={0}".format(install_prefix))
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example = Executable("./example")
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example()
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def test_install(self):
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self.check_install()
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