spack/var/spack/repos/builtin/packages
Kelly (KT) Thompson 322b016230 Provide build_type variant for Metis. (#6808)
* Provide build_type variant for Metis.

+ Ideally, we would make Metis a CMakePackage, but `metis@:5` doesn't use CMake.
+ For now, provide a `build_type=` variant similar what is found in
  CMakePackage.
+ There is a potential for duplicate specification of `CMAKE_BUILD_TYPE` if both
  variants `+debug` and `build_type=` are specified. I am looking for advice on
  how this can be resolved.

* Update metis recipe in response to flake8 and user comments.

+ Wrap comment lines that used more than 80 columns.
+ Change `+debug` variant to avoid potential for multiple `-DCMAKE_BUID_TYPE=`
  arguments provided to cmake.  Specifying this variant no longer appends this
  configure option.  However, if `+debug` is specified, require
  `build_type=Debug` to maintain expected behavior.

* For metis, remove +debug variant; use build_type= instead.

+ Update recipe for metis@4 to extract `build_type=` values and set `OPTFLAGS`
  accordingly.
+ For metis@5:, the behavior from the previously supported variant `+debug` can
  be obtained with the options `+gdb build_type=Debug`

* Conflicts added for metis@4 when build_type != Release|Debug.

* Use spack function conflicts instead of 'raise InstallError'.
2018-01-05 13:45:21 -06:00
..
abinit
abyss
ack
activeharmony
adept-utils
adios Add Maintainer (#6575) 2017-12-05 14:27:56 -07:00
adios2 Add Maintainer (#6575) 2017-12-05 14:27:56 -07:00
adlbx
adol-c
albert
alglib
allinea-forge
allinea-reports
allpaths-lg
alquimia
alsa-lib
amg
amg2013
amp
ampliconnoise
amr-exp-parabolic
amrex
andi
angsd
ant
antlr
ape
apex
applewmproto
appres
apr
apr-util
archer
argtable
arlecore
armadillo
arpack-ng
ascent updates to conduit and ascent packages (new PR) (#6584) 2017-12-08 13:43:12 -08:00
asciidoc
aspa
aspell
aspell6-de
aspell6-en
aspell6-es
assimp
astra
astral
astyle
atk
atlas
atom-dft atom-dft: new package plus dependencies (#6653) 2018-01-02 20:32:37 -06:00
atompaw
atop
augustus adding specific version url for augustus 3.3 due to old folder structure (#6813) 2018-01-02 19:24:28 -06:00
autoconf
autodock-vina
autogen
automaded
automake
bamtools bamtools: Add version 2.5.1 (#6770) 2018-01-02 10:55:07 -08:00
bamutil
bash
bash-completion
bats
bazel bazel: include SPACK_DEBUG_LOG_ID in environment (#6562) 2017-12-11 10:34:06 -08:00
bbcp
bbmap
bcftools
bcl2fastq2
bdftopcf
bdw-gc
bear
beast2
bedtools2 bedtools2: Add version 2.27.1 (#6693) 2017-12-16 19:36:35 -07:00
beforelight
benchmark
berkeley-db
bertini
bib2xhtml
bigreqsproto
binutils
bioawk
biopieces new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
bison
bitmap
blast-plus
blat
blaze
bliss
blitz
bml
bohrium add OctavePackage (#6746) 2018-01-02 20:03:27 -06:00
boost new package: Percept (#6636) 2017-12-14 18:11:47 -08:00
boostmplcartesianproduct
bowtie
bowtie2
boxlib
bpp-core
bpp-phyl
bpp-seq
bpp-suite
braker
branson
breakdancer added breakdancer (#6319) 2017-12-14 14:43:32 -07:00
breseq breseq: Create new package (#6648) 2017-12-16 19:47:11 -07:00
brigand
bsseeker2
bucky
busco
butter
bwa bwa: added version 0.7.16a and checksum (#6658) 2017-12-16 19:43:02 -07:00
byobu
bzip2
c-blosc c-blosc: 1.12.1 (#6571) 2017-12-05 12:49:22 +01:00
caffe
cairo
caliper Caliper update, add version 1.6.0 (#6680) 2017-12-16 19:39:52 -07:00
callpath
candle-benchmarks Candle benchmarks update (#6619) 2017-12-08 10:34:49 +01:00
cantera
canu
cap3
cares
cask
catch
cbench
cblas
cbtf
cbtf-argonavis
cbtf-argonavis-gui
cbtf-krell
cbtf-lanl
ccache
cctools
cdbfasta
cdd
cddlib
cdhit
cdo Package 'cdo': get rid of unnecessary dependency on MPI C++ library. (#6632) 2017-12-16 19:48:56 -07:00
cereal
cfitsio
cgal Fix CGAL checksum and switch to more stable URL (#6511) 2017-11-30 09:18:54 +01:00
cgm
cgns Update CGNS and add CGNS capability to Trilinos (#6568) 2017-12-05 14:33:36 -07:00
charm
check
chlorop
chombo
cityhash
clamr
cleaveland4
cleverleaf
clfft
clhep
cloc
cloog
cloverleaf
cloverleaf3d
clustalo
clustalw
cmake
cmocka
cmor
cnmem
cnpy
cns-nospec
cntk
cntk1bitsgd
codar-cheetah
coevp
cohmm
coinhsl CoinHSL : Prevent CoinHSL from building in parallel (#6715) 2017-12-19 08:30:39 +01:00
comd
compiz
compositeproto
conduit updates to conduit and ascent packages (new PR) (#6584) 2017-12-08 13:43:12 -08:00
constype
converge
coreutils
corset
cosmomc
cosp2
cp2k
cppad
cppcheck
cpprestsdk
cppunit
cppzmq
cram
cryptopp
cscope
csdp
cub
cube
cuda CUDA: 9.1 (#6663) 2017-12-13 14:43:40 +01:00
cuda-memtest Add Maintainer (#6575) 2017-12-05 14:27:56 -07:00
cudnn
cufflinks
cups
curl make nghttp2 optional for curl, as it does not build for older compilers. (#5977) 2018-01-04 09:45:45 -06:00
cvs
czmq
dakota
daligner
damageproto
damselfly
darshan-runtime
darshan-util
dash
datamash
dataspaces
dbus
dealii add OctavePackage (#6746) 2018-01-02 20:03:27 -06:00
dejagnu
delly2
denovogear DeNovoGear: Create new package (#6699) 2017-12-16 19:34:53 -07:00
dia
dialign-tx
diamond new package: DIAMOND (#6793) 2018-01-02 12:03:45 -08:00
direnv
discovar
dlpack
dmlc-core
dmxproto
docbook-xml
docbook-xsl
dos2unix
double-conversion
doxygen
dri2proto
dri3proto
dtcmp
dyninst
ea-utils
easybuild
ebms
eccodes Update for 'eccodes'. (#6604) 2017-12-08 09:34:37 +01:00
ecp-proxy-apps
editres
eigen
elemental
elfutils
elk
elpa
emacs Emacs: added gnutls variant (tested on Centos 7) (#6711) 2017-12-19 08:36:54 +01:00
emboss
encodings
environment-modules
es
esmf Esmf fixes for Cray, OSX and mpich (#6768) 2018-01-02 19:43:55 -06:00
espresso
etsf-io
everytrace
everytrace-example
evieext
exabayes
exampm
exasp2
exmcutils
exodusii
exonerate
expat
expect
express
extrae
exuberant-ctags
f90cache
falcon
farmhash
fastjar
fastmath
fastme
fastphase
fastq-screen
fastqc
fastqvalidator
fasttree Feature/fasttree (#6227) 2017-12-20 19:10:24 -08:00
fastx-toolkit
fenics
ferret
ffmpeg
fftw fftw: added version 3.3.7 (#6678) 2017-12-14 21:38:33 +01:00
fimpute
findutils
fio
fish Update fish to 2.7.0 (#6608) 2017-12-08 10:15:40 +01:00
fixesproto
flac
flang clang,flang: update CC, CXX environment in installation module (#6737) 2017-12-22 07:32:10 +01:00
flann
flash
flecsale
flecsi
flex Flex v2.6.4 conflicts with gcc@7.2.0 (#6819) 2018-01-03 09:46:57 -06:00
flint
flit Flit package (#6260) 2017-11-30 09:05:40 +01:00
fltk fltk depends on libx11. (#6816) 2018-01-03 10:14:51 -06:00
flux
fmt
foam-extend ENH: improved openfoam module creation (issue #4942) 2017-12-20 11:32:33 -08:00
folly
font-adobe-75dpi
font-adobe-100dpi
font-adobe-utopia-75dpi
font-adobe-utopia-100dpi
font-adobe-utopia-type1
font-alias
font-arabic-misc
font-bh-75dpi
font-bh-100dpi
font-bh-lucidatypewriter-75dpi
font-bh-lucidatypewriter-100dpi
font-bh-ttf
font-bh-type1
font-bitstream-75dpi
font-bitstream-100dpi
font-bitstream-speedo
font-bitstream-type1
font-cronyx-cyrillic
font-cursor-misc
font-daewoo-misc
font-dec-misc
font-ibm-type1
font-isas-misc
font-jis-misc
font-micro-misc
font-misc-cyrillic
font-misc-ethiopic
font-misc-meltho
font-misc-misc
font-mutt-misc
font-schumacher-misc
font-screen-cyrillic
font-sony-misc
font-sun-misc
font-util
font-winitzki-cyrillic
font-xfree86-type1
fontcacheproto
fontconfig
fontsproto
fonttosfnt
fpc
freebayes
freetype
fseq
fsl
fslsfonts
fstobdf
funhpc
gapbs
gapcloser
gapfiller
gasnet
gatk gatk: boilerplate cleanup (#6744) 2018-01-02 20:05:04 -06:00
gaussian
gawk
gblocks
gcc gcc: remove all variant (#5283) 2017-12-03 10:19:55 +01:00
gccmakedep
gccxml
gconf
gdal
gdb Added GDB verison 8.0 (#6704) 2017-12-19 09:54:18 +01:00
gdbm
gdk-pixbuf
geant4
gearshifft Add Maintainer (#6575) 2017-12-05 14:27:56 -07:00
gemmlowp
genemark-et
genometools
geos
gettext
gflags
ghostscript
ghostscript-fonts
giflib
git git: Update to 2.15.1 (#6642) 2017-12-11 17:26:53 -07:00
git-lfs
gl2ps
glew
glib
glm
global
globalarrays
globus-toolkit globus-toolkit: add version and openssl dependency (#6617) 2017-12-18 15:23:56 -08:00
glog
glpk
glproto
gmake
gmap-gsnap gmap-gsnap: adding version 2014_12_28 (#6720) 2017-12-22 06:56:58 +01:00
gmime
gmp
gmsh gmsh: add 3.0.6 (#6718) 2017-12-19 08:31:23 +01:00
gnat
gnu-prolog
gnupg Update gnupg to 2.2.3 (#6573) 2017-12-05 14:29:20 -07:00
gnuplot
gnutls
go
go-bootstrap
gobject-introspection
googletest
gotcha
gource
gperf
gperftools
grackle Update grackle (#6822) 2018-01-03 21:35:17 +01:00
gradle
grandr
graphlib
graphmap
graphviz
grib-api Update for 'grib-api'. (#6605) 2017-12-08 09:33:30 +01:00
groff
gromacs
gsl
gtkorvo-atl
gtkorvo-cercs-env
gtkorvo-dill
gtkorvo-enet
gtkplus
gts
guidance
guile
h5hut
h5part
h5utils
h5z-zfp
hacckernels
hadoop Hadoop: Replace broken url (#6671) 2017-12-16 19:42:03 -07:00
hapcut2
haploview
harfbuzz
harminv
hdf
hdf5 Provide a patch to allow hdf5@1.10.1 to build with intel/18.0.1. (#6583) 2017-12-08 09:55:06 +01:00
hdf5-blosc
help2man
hepmc
heppdt
highfive
highwayhash
hisat2
hmmer
hoomd-blue
hpccg
hpctoolkit
hpctoolkit-externals
hpgmg
hpl
hpx
hpx5
hsakmt
hstr
htop
htslib
httpie
hub
hunspell
hwloc Rename variant static to shared (#6543) 2017-12-03 16:19:32 -07:00
hybpiper
hydra
hypre hypre: add 2.13.0 (#6726) 2017-12-19 15:39:27 +01:00
i3 Added i3 and its dependencies. (#6805) 2018-01-04 14:45:25 -06:00
ibmisc
iceauth
icedtea
icet
ico
icu4c
id3lib
idba
igraph
igv IGV: new package (#6710) 2017-12-18 19:37:09 -08:00
ilmbase
image-magick
imake
impute2
infernal
inputproto
intel
intel-daal
intel-gpu-tools
intel-ipp
intel-mkl
intel-mkl-dnn Intel mkl dnn (#6268) 2018-01-02 21:27:34 -06:00
intel-mpi
intel-parallel-studio intel-parallel-studio: restrict patch to versions > 2016 (#6523) 2017-12-11 13:14:24 -08:00
intel-tbb intel-tbb: add 2018.2 (#6725) 2017-12-19 15:39:42 +01:00
intltool
ior
iozone
ipopt
isaac Add Maintainer (#6575) 2017-12-05 14:27:56 -07:00
isaac-server Add Maintainer (#6575) 2017-12-05 14:27:56 -07:00
isl
itstool
itsx
jags jags: lapack fix (#6764) 2018-01-02 19:57:54 -06:00
jansson Add Maintainer (#6575) 2017-12-05 14:27:56 -07:00
jasper
jdk
jellyfish
jemalloc
jmol
jq
json-c
json-cwx
json-glib
jsoncpp
judy
julia
kahip
kaks-calculator
kaldi Install all the cli tools from all the sub-directories (#6705) 2018-01-02 20:14:39 -06:00
kallisto
kbproto
kdiff3
kealib
kentutils
kmergenie
kokkos
kraken
krims
kripke
kvasir-mpl Add Kvasir MPL (#6529) 2017-12-02 16:02:43 -07:00
laghos laghos: inject CXX (#6664) 2017-12-12 17:26:02 -07:00
lammps
last
latte
launchmon
lazyten
lbann Lbann update (#6751) 2018-01-02 20:01:23 -06:00
lbxproxy
lcals
lcms
ldc
ldc-bootstrap
legion
leveldb
lftp lftp: adding version 4.6.4 (#6721) 2017-12-19 08:19:33 +01:00
libaec
libaio Fix in download url for package libaio (#6616) 2017-12-08 10:20:14 -07:00
libapplewm
libarchive
libassuan Update gnupg to 2.2.3 (#6573) 2017-12-05 14:29:20 -07:00
libatomic-ops
libbeagle
libbsd
libbson
libcanberra
libcap
libcerf
libcint
libcircle
libconfig
libctl
libdivsufsort
libdmx
libdrm
libdwarf
libedit
libelf
libemos
libepoxy
libev Added i3 and its dependencies. (#6805) 2018-01-04 14:45:25 -06:00
libevent
libevpath
libfabric
libffi
libffs
libfontenc
libfs
libgcrypt Update gnupg to 2.2.3 (#6573) 2017-12-05 14:29:20 -07:00
libgd
libgit2
libgpg-error
libgpuarray
libgridxc atom-dft: new package plus dependencies (#6653) 2018-01-02 20:32:37 -06:00
libgtextutils
libharu libharu: Make dependencies on zlib and libpng explicit (#6682) 2017-12-14 08:58:42 +01:00
libhio
libice
libiconv
libint
libjpeg
libjpeg-turbo
libksba
liblbxutil
libmatheval
libmesh
libmng
libmongoc libmongoc: Fix pkg-config file not containing snappy and zlib paths (#6467) 2017-11-28 16:47:12 -07:00
libmonitor
libnbc
libogg
liboldx
libpcap
libpciaccess
libpfm4
libpipeline
libpng libpng: CPPFLAGS for -I (#6563) 2017-12-04 15:29:35 -07:00
libpsl
libpthread-stubs
libquo
libsigsegv
libsm
libsodium libsodium: Update to 1.0.15 (#6643) 2017-12-11 17:27:09 -07:00
libspatialindex
libsplash Add Maintainer (#6575) 2017-12-05 14:27:56 -07:00
libssh2
libsvm
libszip Package 'libszip': update checksum and list_depth. (#6587) 2017-12-06 18:28:11 -07:00
libtermkey
libtiff Add libtiff@3. (#6818) 2018-01-03 10:02:45 -06:00
libtool
libunistring
libunwind
libuuid
libuv
libvorbis
libvterm
libwebsockets Add Maintainer (#6575) 2017-12-05 14:27:56 -07:00
libwindowswm
libx11
libxau
libxaw
libxaw3d
libxc
libxcb
libxcomposite
libxcursor
libxdamage
libxdmcp
libxevie
libxext
libxfixes
libxfont
libxfont2
libxfontcache
libxft
libxi
libxinerama
libxkbcommon Added i3 and its dependencies. (#6805) 2018-01-04 14:45:25 -06:00
libxkbfile
libxkbui
libxml2
libxmu
libxp
libxpm
libxpresent
libxprintapputil
libxprintutil
libxrandr
libxrender
libxres
libxscrnsaver
libxshmfence
libxslt
libxsmm
libxstream
libxt
libxtrap
libxtst
libxv
libxvmc
libxxf86dga
libxxf86misc
libxxf86vm
libyogrt
libzip
likwid likwid: add stable 4.3.0 (#6761) 2018-01-02 19:59:14 -06:00
linkphase3
linux-headers
listres
llvm clang,flang: update CC, CXX environment in installation module (#6737) 2017-12-22 07:32:10 +01:00
llvm-lld
llvm-openmp-ompt
lmdb
lmod Relax restriction on lua version. (#5886) 2017-12-08 20:52:00 +01:00
lndir
log4cxx
lrslib
lrzip
lua
lua-bitlib
lua-jit
lua-lpeg
lua-luafilesystem
lua-luaposix
lua-mpack
luit
lulesh
lwgrp
lwm2
lz4
lzma
lzo
m4
macsio
mad-numdiff
mafft
magics
magma
makedepend
mallocmc Add Maintainer (#6575) 2017-12-05 14:27:56 -07:00
man-db
mariadb
masa
masurca
matio
matlab
maven
maverick
mawk
mbedtls
mcl
mdtest
meep
mefit mefit: Create new package. (#6700) 2017-12-16 19:34:30 -07:00
memaxes
meme
meraculous
mercurial fix post install method for py3 in mercurial (#6497) 2017-12-17 12:00:58 -06:00
mesa mesa: disable binutils on macOS (#6763) 2018-01-02 19:58:38 -06:00
mesa-glu
meshkit
meson
mesquite
metaphysicl
metasv MetaSV: adding new package (#6691) 2017-12-16 19:36:11 -07:00
metis Provide build_type variant for Metis. (#6808) 2018-01-05 13:45:21 -06:00
mfem
microbiomeutil
minced MinCED: Create new package (#6815) 2018-01-02 19:25:08 -06:00
miniaero
miniamr
miniconda2
miniconda3
minife
minighost
minigmg
minimap2
minimd
minisign Add new package minisign (#6644) 2017-12-11 17:27:40 -07:00
minismac2d
minitri
minixyce
mira
mirdeep
mitofates
mitos
mkfontdir
mkfontscale
mlhka
moab
molcas
mono
mosh
mothur
motioncor2 Create a symbolic link to the MotionCor2_x.x.x executable. (#6826) 2018-01-04 21:27:59 -06:00
mozjs
mpc
mpe2
mpest
mpfr
mpibash
mpiblast
mpich
mpifileutils
mpileaks
mpip
mpir
mpix-launch-swift
mrbayes mrbayes: url now points to github + removed the deprecated sourceforge url (#6578) 2017-12-06 07:58:08 +01:00
mrnet
mrtrix3
msgpack-c
mshadow
multitail
multiverso
mummer
mumps
munge
muparser
muscle
muse
muster
mvapich2
mxml
mxnet
nag
nalu Adding option to build Nalu with Hypre support. (#6782) 2018-01-02 19:42:47 -06:00
namd
nano
nanoflann
nasm
nauty
ncbi-rmblastn
nccl
nccmp
ncdu
ncftp
ncl
nco
ncurses Emacs: added gnutls variant (tested on Centos 7) (#6711) 2017-12-19 08:36:54 +01:00
ncview
ndiff
nek5000 Adding Nek5000 to Spack (#6153) 2018-01-04 09:41:53 -06:00
nekbone Adding Nek5000 to Spack (#6153) 2018-01-04 09:41:53 -06:00
nekcem Add NekCEM package to spack (#6509) 2017-12-08 10:30:42 -07:00
neovim Fix reference to self.versions in neovim package (#6639) 2017-12-10 21:43:49 +01:00
netcdf
netcdf-cxx dealii: add scalapack and various cleanups (#6552) 2017-12-04 08:02:05 +01:00
netcdf-cxx4 dealii: add scalapack and various cleanups (#6552) 2017-12-04 08:02:05 +01:00
netcdf-fortran
netgauge
netgen
netlib-lapack build lapacke with tmg (#6654) 2017-12-16 19:43:46 -07:00
netlib-scalapack
nettle
neuron Adding NEURON simulator package (#5097) 2018-01-04 09:55:30 -06:00
nextflow nextflow: adding version 0.21.0 (#6722) 2017-12-19 09:07:33 +01:00
nfft
nghttp2
nginx Updated 'nginx' from v1.12.0 to v1.13.8. (#6810) 2018-01-02 19:29:47 -06:00
ngmlr
ninja
ninja-fortran
nlopt Add new package nlopt (#6499) 2017-11-29 10:27:08 +01:00
nmap
nnvm
node-js
notmuch
npb
npm
npth Update gnupg to 2.2.3 (#6573) 2017-12-05 14:29:20 -07:00
nspr
numactl
numdiff
nut
nwchem
ocaml
oce
oclock
octave
octave-optim add OctavePackage (#6746) 2018-01-02 20:03:27 -06:00
octave-splines add OctavePackage (#6746) 2018-01-02 20:03:27 -06:00
octave-struct add OctavePackage (#6746) 2018-01-02 20:03:27 -06:00
octopus
of-adios-write
ompss
ompt-openmp
oniguruma
ont-albacore
opari2
openbabel
openblas
opencoarrays
opencv
openexr
openfast Update openfast package to explicity pass MPI implementation during cmake configure. (#6590) 2017-12-08 09:09:35 +01:00
openfoam-com package openfoam-com: add version 1712 and update patches (#6820) 2018-01-03 11:30:10 -08:00
openfoam-org package openfoam-com: add version 1712 and update patches (#6820) 2018-01-03 11:30:10 -08:00
openfst
openjpeg Package 'openjpeg': set INSTALL_NAME_DIR on MacOS for old versions. (#6603) 2017-12-08 13:36:20 +01:00
openmc
openmpi
opennurbs Add opennurbs package (#6570) 2017-12-05 10:33:55 -07:00
openscenegraph
openspeedshop
openssh Update openSSH to 7.6p1 (#6598) 2017-12-08 10:13:41 -07:00
openssl Revert "openssl: Add perl dependency" (#6831) 2018-01-04 16:46:24 -06:00
opium
opus
orfm
orthomcl
osu-micro-benchmarks
otf
otf2
p4est
p7zip
pacbio-daligner
pacbio-damasker
pacbio-dazz-db
pacbio-dextractor
pagit
pagmo
paml
panda
pandaseq PANDAseq: Create new package (#6694) 2017-12-16 19:35:48 -07:00
pango
papi
paradiseo
parallel
parallel-netcdf
paraver
paraview Fix build of paraview (#5802) 2018-01-04 09:47:17 -06:00
parmetis
parmgridgen
parsimonator
parsplice
partitionfinder
patch
patchelf
pathfinder
pax-utils
pbmpi
pcma
pcre
pcre2
pdsh
pdt
pegtl
pennant
percept new package: Percept (#6636) 2017-12-14 18:11:47 -08:00
perl
perl-algorithm-diff
perl-b-hooks-endofscope
perl-bio-perl
perl-bit-vector new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-capture-tiny
perl-carp-clan new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-class-data-inheritable
perl-class-inspector new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-class-load
perl-class-load-xs
perl-cpan-meta-check
perl-data-optlist
perl-data-stag
perl-dbd-mysql new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-dbfile
perl-dbi
perl-devel-cycle
perl-devel-globaldestruction
perl-devel-overloadinfo
perl-devel-stacktrace
perl-dist-checkconflicts
perl-encode-locale new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-eval-closure
perl-exception-class
perl-extutils-makemaker
perl-extutils-pkgconfig
perl-file-copy-recursive new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-file-listing new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-file-pushd
perl-file-sharedir-install new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-file-slurp-tiny new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-file-which create perl-file-which package (#6800) 2018-01-02 19:36:59 -06:00
perl-font-ttf
perl-gd
perl-gd-graph
perl-gd-text
perl-html-parser new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-html-tagset new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-http-cookies new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-http-daemon new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-http-date new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-http-message new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-http-negotiate new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-inline new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-inline-c new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-intervaltree
perl-io-html new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-io-sessiondata new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-io-socket-ssl new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-io-string
perl-log-log4perl
perl-lwp new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-lwp-mediatypes new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-lwp-protocol-https new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-math-cdf
perl-module-build
perl-module-runtime-conflicts
perl-moose
perl-mozilla-ca new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-mro-compat
perl-namespace-clean
perl-net-http new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-net-ssleay new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-package-deprecationmanager
perl-package-stash
perl-package-stash-xs
perl-padwalker
perl-params-util
perl-parse-recdescent new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-pdf-api2
perl-pegex new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-soap-lite new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-star-fusion
perl-statistics-descriptive Perl-statistics-descriptive: Create new package (#6588) 2017-12-08 10:22:16 -07:00
perl-sub-exporter
perl-sub-exporter-progressive
perl-sub-identify
perl-sub-install
perl-sub-name
perl-sub-uplevel
perl-svg new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-task-weaken new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-term-readkey
perl-test-cleannamespaces
perl-test-deep
perl-test-differences
perl-test-exception
perl-test-fatal
perl-test-memory-cycle
perl-test-most
perl-test-needs
perl-test-requires
perl-test-requiresinternet new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-test-warn
perl-test-warnings
perl-text-diff
perl-time-hires new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-try-tiny new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-uri new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-uri-escape
perl-version new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-www-robotrules new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-xml-libxml perl-xml-libxml: adding perl module (#6783) 2018-01-02 19:42:09 -06:00
perl-xml-parser
perl-xml-parser-lite new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
perl-yaml-libyaml new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
petsc Add petsc version 3.8.3 (#6688) 2017-12-16 19:37:35 -07:00
pexsi
pfft
pflotran
pfunit new package: Pfunit: unit testing framework for Fortran (#6795) 2018-01-02 12:18:08 -08:00
pgdspider
pgi
phantompeakqualtools
phasta
phylip
picard picard: Add version 2.17.0 (#6729) 2017-12-20 13:28:37 +01:00
pidx
pigz
piranha
pixman
pkg-config
pkgconf
planck-likelihood
plasma
plink
plumed
pmgr-collective
pmix
pnfft
pngwriter Add Maintainer (#6575) 2017-12-05 14:27:56 -07:00
poamsa
pocl
polymake
porta
portage
postgresql
ppl
prank
presentproto
preseq
price
primer3
printproto
probconsrna
proj
protobuf Protobuf intel patch (#5233) 2018-01-04 09:48:22 -06:00
proxymngr
pruners-ninja
ps-lite
psi4
pstreams
pugixml
pumi
pvm
py-3to2
py-4suite-xml
py-abipy
py-adios New Package: py-adios (#5686) 2018-01-02 21:37:59 -06:00
py-alabaster
py-apache-libcloud
py-apipkg
py-appdirs
py-appnope
py-apscheduler
py-argcomplete
py-argparse
py-ase
py-asn1crypto
py-astroid Fix astroid dependency and mark broken version (#6493) 2017-11-28 16:43:43 -07:00
py-astropy Fix AstroPy: Missing Markupsafe (#6630) 2017-12-08 10:21:46 -07:00
py-attrs
py-autopep8
py-babel
py-backports-abc
py-backports-functools-lru-cache add package: py-backports-functools-lru-cache (#6488) 2017-11-28 13:54:40 -08:00
py-backports-shutil-get-terminal-size
py-backports-ssl-match-hostname
py-basemap
py-beautifulsoup4
py-binwalk
py-biom-format
py-biopython package py-biopython: remove py-mx dependency (#6772) 2018-01-02 10:59:21 -08:00
py-bleach
py-blessings
py-bokeh
py-boltons
py-bottleneck
py-brian
py-brian2
py-bsddb3
py-bx-python py-bx-python: Create new package (#6672) 2017-12-16 19:38:59 -07:00
py-cclib
py-cdat-lite
py-cdo
py-certifi
py-cffi
py-chardet
py-click
py-cogent py-cogent: Create new package (#6624) 2017-12-08 10:38:37 +01:00
py-colorama
py-colormath
py-configparser
py-counter
py-coverage
py-cpuinfo
py-cryptography
py-csvkit
py-current
py-cutadapt
py-cycler
py-cython
py-dask
py-dateutil
py-dbf
py-decorator
py-deeptools
py-dendropy py-dendropy: Create new package (#6528) 2017-12-01 11:00:45 -07:00
py-dev
py-dill
py-dlcpar
py-docutils
py-doxypy
py-doxypypy
py-dryscrape
py-dxchange
py-dxfile
py-easybuild-easyblocks
py-easybuild-easyconfigs
py-easybuild-framework
py-edffile
py-editdistance add package py-editdistance (#6492) 2017-11-28 16:43:00 -07:00
py-elasticsearch
py-elephant
py-emcee
py-entrypoints
py-enum34 add conflicts to py-enum34 (#6496) 2017-11-28 16:45:08 -07:00
py-epydoc
py-espresso
py-espressopp
py-et-xmlfile
py-execnet
py-fastaindex
py-fasteners
py-faststructure
py-fiscalyear
py-flake8 add restriction to py-setuptools dependency on py-flake8 (#6589) 2017-12-08 10:22:52 -07:00
py-flask
py-flexx
py-funcsigs
py-functools32
py-future
py-futures
py-genders
py-genshi
py-git2
py-git-review
py-gnuplot
py-griddataformats
py-guidata
py-guiqwt
py-h5py Py h5py update (#6635) 2017-12-11 17:26:13 -07:00
py-html2text
py-html5lib
py-htseq py-htseq: Create new package. (#6623) 2017-12-08 10:36:57 +01:00
py-httpbin
py-hypothesis
py-idna
py-igraph
py-imagesize
py-iminuit
py-importlib
py-ipaddress
py-ipdb
py-ipykernel
py-ipython
py-ipython-genutils
py-ipywidgets
py-isort add package py-isort (#6491) 2017-11-28 16:42:47 -07:00
py-itsdangerous
py-jdcal
py-jedi
py-jinja2
py-joblib
py-jpype
py-jsonschema
py-junit-xml
py-jupyter-client
py-jupyter-console
py-jupyter-core
py-jupyter-notebook
py-keras
py-latexcodec
py-lazy
py-lazy-object-proxy add package py-lazy-object-proxy (#6489) 2017-11-30 09:17:28 +01:00
py-lazyarray
py-libconf
py-libensemble Add new package py-libensemble (#6525) 2017-12-01 11:01:08 -07:00
py-line-profiler
py-linecache2
py-lit
py-llvmlite
py-lmfit
py-lockfile
py-logilab-common
py-lrudict py-lrudict: a LRU-based cache dictionary (#6734) 2018-01-02 20:10:49 -06:00
py-lxml
py-lzstring
py-macholib
py-machotools
py-macs2
py-mako
py-mappy
py-markdown
py-markupsafe
py-matplotlib
py-mccabe
py-mdanalysis
py-meep
py-memory-profiler
py-methylcode
py-misopy
py-mistune
py-mock
py-moltemplate moltemplate: add new package (#6702) 2017-12-16 19:33:28 -07:00
py-mongo Fix pymongo package (#6832) 2018-01-05 08:47:36 -06:00
py-monotonic
py-monty
py-mpi4py Cython only needed for develop version of mpi4py (#6780) 2018-01-02 11:34:24 -08:00
py-mpmath
py-multiprocess
py-multiqc py-multiqc: Add version 1.3 (#6554) 2017-12-03 16:21:27 -07:00
py-mx
py-mxnet
py-myhdl
py-mysqldb1
py-nbconvert
py-nbformat
py-neo
py-nestle
py-netcdf4
py-netifaces
py-networkx
py-nose
py-nosexcover
py-numba
py-numexpr
py-numpy py-numpy: add 1.13.3 (#6484) 2017-11-28 13:42:59 +01:00
py-numpydoc
py-olefile
py-ont-fast5-api
py-openpyxl
py-ordereddict
py-oset
py-packaging
py-palettable
py-pandas py-pandas: add versions 0.19.2 and 0.21.1 (#6687) 2017-12-16 19:38:02 -07:00
py-paramiko
py-pathlib2
py-pathos
py-pathspec
py-patsy
py-pbr
py-periodictable
py-petsc4py
py-pexpect
py-phonopy
py-pickleshare
py-pil
py-pillow
py-pip
py-pipits
py-pkgconfig
py-plotly Add: Py-Plotly (#6628) 2017-12-08 10:21:28 -07:00
py-ply
py-pmw
py-pox
py-ppft
py-prettytable
py-proj
py-prompt-toolkit
py-protobuf
py-psutil
py-ptyprocess
py-pudb
py-py
py-py2bit
py-py2cairo
py-py2neo
py-py4j
py-pyani py-pyani: Create new package (#6811) 2018-01-02 19:27:42 -06:00
py-pyasn1
py-pybigwig
py-pybind11
py-pybtex
py-pybtex-docutils
py-pychecker
py-pycodestyle
py-pycparser
py-pycrypto
py-pycurl
py-pydatalog
py-pydispatcher
py-pydot
py-pyelftools
py-pyfasta
py-pyfftw
py-pyflakes
py-pygments
py-pygobject
py-pygtk
py-pylint remove breaking version and cleanup of dependencies (#6494) 2017-11-28 16:46:23 -07:00
py-pymatgen
py-pyminifier
py-pympler
py-pynn
py-pypar
py-pyparsing
py-pypeflow
py-pyprof2html
py-pyqt
py-pyrad
py-pysam py-pysam: adding old version 0.7.7 (#6675) 2017-12-13 09:01:45 +01:00
py-pyscaf
py-pyserial
py-pyside
py-pysocks
py-pytables
py-pytest
py-pytest-cov
py-pytest-flake8
py-pytest-httpbin
py-pytest-mock
py-pytest-runner add missing build dependency to py-pytest-runner (#6490) 2017-11-28 16:52:18 -07:00
py-pytest-xdist
py-python-daemon
py-python-gitlab
py-pythonqwt
py-pytz Add: Py-Plotly (#6628) 2017-12-08 10:21:28 -07:00
py-pywavelets
py-pyyaml
py-qtawesome
py-qtconsole
py-qtpy
py-quantities
py-radical-utils
py-ranger
py-readme-renderer
py-regex
py-reportlab py-reportlab: Create new package (#6612) 2017-12-08 10:22:46 +01:00
py-requests Add: Py-Plotly (#6628) 2017-12-08 10:21:28 -07:00
py-restview
py-rope
py-rpy2
py-rsa
py-rseqc new package: py-rseqc (#6773) 2018-01-02 11:10:55 -08:00
py-rtree
py-saga-python
py-scandir py-scandir: a better directory iterator, backport to 2.7 (#6739) 2018-01-02 20:08:58 -06:00
py-scientificpython
py-scikit-image
py-scikit-learn
py-scipy
py-seaborn
py-setuptools
py-setuptools-scm
py-sfepy
py-sh
py-shiboken
py-simplegeneric
py-simplejson
py-singledispatch
py-sip
py-six Add: Py-Plotly (#6628) 2017-12-08 10:21:28 -07:00
py-slepc4py
py-sncosmo
py-snowballstemmer
py-spectra
py-spefile
py-spglib
py-sphinx
py-sphinx-bootstrap-theme
py-sphinx-rtd-theme
py-sphinxcontrib-bibtex
py-sphinxcontrib-programoutput
py-sphinxcontrib-websupport
py-spyder
py-spykeutils
py-sqlalchemy
py-statsmodels
py-storm
py-subprocess32
py-symengine
py-symfit
py-sympy
py-tabulate
py-tappy
py-terminado
py-tetoolkit py-tetoolkit: Create new package (#6673) 2017-12-16 19:38:36 -07:00
py-theano
py-tifffile
py-toml Flit package (#6260) 2017-11-30 09:05:40 +01:00
py-tomopy
py-tornado
py-tqdm
py-traceback2
py-traitlets
py-tuiview
py-twisted
py-typing
py-tzlocal
py-umi-tools py-umi-tools: Create new package (#6823) 2018-01-04 08:55:37 -06:00
py-unittest2
py-unittest2py3k
py-urllib3
py-urwid
py-vcversioner
py-virtualenv
py-vsc-base
py-vsc-install
py-wcsaxes
py-wcwidth
py-webkit-server
py-werkzeug
py-wheel
py-widgetsnbextension
py-wrapt
py-xarray
py-xattr py-xattr: a python interface to access extended file attribute (#6747) 2018-01-02 20:02:03 -06:00
py-xlrd
py-xlsxwriter
py-xmlrunner
py-xopen
py-xpyb
py-xvfbwrapper
py-yapf
py-yt
py-zmq
python
qbank
qbox
qhull
qmcpack QMCPACK package: update blas/lapack detection (#6753) 2017-12-22 16:47:49 -08:00
qmd-progress
qrupdate qrupdate: fix blas/lapack and compilation of macOS (#6614) 2017-12-08 10:24:44 +01:00
qt qt: add 5.10.0, fix macOS build, clean-up comments/TODOs (#6766) 2018-01-04 09:00:01 -06:00
qt-creator
qtgraph
qthreads
quinoa
qwt
r Added package r version 3.4.3 (#6565) 2017-12-04 17:39:34 -07:00
r-a4
r-a4base
r-a4classif
r-a4core
r-a4preproc
r-a4reporting
r-abadata
r-abaenrichment
r-abind
r-absseq
r-acde
r-acepack
r-acgh
r-acme
r-ada
r-adabag
r-ade4
r-adegenet
r-adsplit
r-affxparser
r-affy
r-affycomp
r-affycompatible
r-affycontam
r-affycoretools
r-affydata
r-affyexpress
r-affyilm
r-affyio
r-affypdnn
r-affyplm
r-affyqcreport
r-affyrnadegradation
r-agdex
r-agilp
r-agimicrorna
r-aims
r-aldex2
r-allelicimbalance
r-alpine
r-als
r-alsace
r-altcdfenvs
r-ampliqueso
r-analysispageserver
r-anaquin
r-aneufinder
r-aneufinderdata
r-annaffy
r-annotate
r-annotationdbi
r-annotationfilter
r-annotationforge
r-annotationhub
r-ape
r-assertthat
r-backports
r-bamsignals
r-base64
r-base64enc
r-beanplot
r-bh
r-bindr
r-bindrcpp
r-biobase
r-biocgenerics
r-biocinstaller
r-biocparallel
r-biomart
r-biomformat r-biomformat: Create new package. (#6517) 2017-11-30 09:14:12 +01:00
r-biostrings
r-biovizbase
r-bit
r-bit64
r-bitops
r-blob
r-boot
r-brew
r-broom
r-bsgenome
r-bumphunter
r-c50
r-callr
r-car
r-caret
r-category
r-catools
r-cellranger
r-checkmate
r-checkpoint
r-chemometrics
r-chron
r-circlize
r-class
r-classint
r-cli
r-clipr
r-cluster
r-clusterprofiler
r-coda
r-codetools
r-coin
r-colorspace
r-complexheatmap
r-corpcor
r-corrplot
r-covr
r-cowplot
r-crayon
r-crosstalk
r-cubature
r-cubist
r-curl
r-data-table
r-dbi
r-dbplyr
r-delayedarray
r-deldir
r-dendextend
r-deoptim
r-deoptimr
r-deseq
r-deseq2
r-desolve
r-devtools
r-diagrammer
r-dichromat
r-diffusionmap
r-digest
r-diptest
r-dnacopy
r-do-db
r-domc
r-doparallel
r-dorng
r-dose
r-downloader
r-dplyr
r-dt
r-dtw
r-dygraphs
r-e1071
r-edger
r-ellipse
r-ensembldb
r-ergm
r-evaluate
r-expm
r-factoextra
r-factominer
r-ff
r-fftwtools r-fftwtools: new package (#6532) 2017-12-03 16:20:32 -07:00
r-fgsea
r-filehash
r-flashclust
r-flexmix
r-fnn
r-forcats
r-foreach
r-forecast
r-foreign
r-formatr
r-formula
r-fpc
r-fracdiff
r-futile-logger
r-futile-options
r-gbm
r-gcrma
r-gdata
r-geiger
r-genefilter
r-geneplotter
r-genomeinfodb
r-genomeinfodbdata
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-geomorph
r-geoquery
r-geosphere
r-getoptlong
r-ggally
r-ggbio
r-ggdendro
r-ggjoy
r-ggmap
r-ggplot2
r-ggpubr
r-ggrepel
r-ggridges
r-ggsci
r-ggvis
r-gistr
r-git2r
r-glmnet
r-globaloptions
r-glue
r-gmodels
r-gmp
r-go-db
r-googlevis
r-gosemsim
r-gostats
r-gplots
r-graph
r-gridbase
r-gridextra
r-gseabase
r-gsubfn
r-gtable
r-gtools
r-gtrellis
r-gviz
r-haven
r-hexbin
r-highr
r-hmisc
r-hms
r-htmltable
r-htmltools
r-htmlwidgets
r-httpuv
r-httr
r-hwriter
r-hypergraph
r-ica
r-igraph
r-illuminaio
r-impute
r-influencer
r-inline
r-interactivedisplaybase
r-ipred
r-iranges
r-irdisplay
r-irkernel
r-irlba
r-iso
r-iterators
r-janitor
r-jpeg
r-jsonlite
r-kegg-db
r-kegggraph r-kegggraph: Create new package. (#6580) 2017-12-06 18:29:22 -07:00
r-keggrest
r-kernlab
r-kernsmooth
r-kknn
r-knitr
r-labeling
r-lambda-r
r-laplacesdemon
r-lars
r-lattice
r-latticeextra
r-lava
r-lazyeval
r-leaflet
r-leaps
r-learnbayes
r-limma
r-lme4
r-lmtest
r-locfit
r-log4r
r-lpsolve
r-lsei
r-lubridate
r-magic
r-magrittr
r-makecdfenv
r-maldiquant
r-mapproj
r-maps
r-maptools
r-markdown
r-mass
r-matrix
r-matrixmodels
r-matrixstats
r-mclust
r-mcmcglmm
r-mda
r-memoise
r-mergemaid
r-methodss3
r-mgcv
r-mime
r-minfi
r-minqa
r-mixtools
r-mlbench
r-mlinterfaces
r-mnormt
r-modelmetrics
r-modelr
r-modeltools
r-mpm
r-msnbase
r-multcomp
r-multtest
r-munsell
r-mvtnorm
r-mzid
r-mzr
r-nanotime r-nanotime: new package (#6519) 2017-11-30 09:12:58 +01:00
r-ncbit
r-ncdf4
r-network
r-networkd3
r-nlme
r-nloptr
r-nmf
r-nnet
r-nnls
r-nor1mix
r-np
r-numderiv
r-oligoclasses
r-oo
r-openssl
r-org-hs-eg-db r-org-hs-eg-db: Create new package. (#6581) 2017-12-06 18:29:04 -07:00
r-organismdbi
r-packrat
r-pacman
r-pamr
r-party
r-partykit
r-pathview r-pathview: Create new package. (#6582) 2017-12-06 18:29:45 -07:00
r-pbapply
r-pbdzmq
r-pbkrtest
r-pcamethods
r-pcapp
r-permute
r-pfam-db
r-phantompeakqualtools
r-phyloseq r-phyloseq: Create new package. (#6518) 2017-11-30 09:13:31 +01:00
r-pkgconfig
r-pkgmaker
r-plogr
r-plotly
r-plotrix
r-pls
r-plyr
r-pmcmr
r-png
r-prabclus
r-praise
r-preprocesscore
r-prettyunits
r-prodlim
r-progress
r-protgenerics
r-proto
r-proxy
r-pryr
r-psych
r-ptw
r-purrr
r-quadprog
r-quantmod
r-quantreg
r-quantro
r-qvalue
r-r6
r-randomforest
r-ranger
r-raster
r-rbgl
r-rbokeh
r-rcolorbrewer
r-rcpp
r-rcpparmadillo
r-rcppcctz
r-rcppeigen
r-rcppprogress
r-rcurl package r-rcurl: boilerplate cleanup (#6771) 2018-01-02 10:58:03 -08:00
r-rda
r-readr
r-readxl
r-registry
r-rematch
r-reordercluster
r-reportingtools
r-repr
r-reprex
r-reshape
r-reshape2
r-rex
r-rgdal r-rgdal: Create new package. (#6593) 2017-12-08 10:18:29 -07:00
r-rgeos r-rgeos: Create new package. (#6592) 2018-01-04 09:01:17 -06:00
r-rgl
r-rgooglemaps
r-rgraphviz r-rgraphviz: Create new package. (#6316) 2018-01-04 09:37:00 -06:00
r-rhdf5
r-rhtslib r-rhtslib: added build dependency on autoconf (#6627) 2017-12-08 11:18:25 +01:00
r-rinside
r-rjags package/r-rjags: create new package (#6804) 2018-01-03 10:17:15 -06:00
r-rjava
r-rjson
r-rjsonio
r-rlang
r-rmarkdown
r-rminer
r-rmpfr
r-rmpi
r-rmysql
r-rngtools
r-robustbase
r-rocr
r-rodbc
r-roxygen2
r-rpart
r-rpart-plot
r-rpostgresql
r-rsamtools
r-rsnns
r-rsqlite
r-rstan
r-rstudioapi
r-rtracklayer
r-rtsne
r-rvcheck
r-rvest
r-rzmq
r-s4vectors
r-samr
r-sandwich
r-scales
r-scatterplot3d
r-sdmtools
r-segmented
r-selectr
r-seqinr
r-seurat
r-sfsmisc
r-shape
r-shiny
r-shortread
r-siggenes
r-simpleaffy
r-sn
r-snow
r-som
r-somaticsignatures
r-sourcetools
r-sp
r-sparsem
r-spdep
r-speedglm
r-sqldf
r-stanheaders
r-statmod
r-statnet-common
r-stringi
r-stringr
r-strucchange
r-subplex
r-summarizedexperiment
r-survey
r-survival
r-sva
r-tarifx
r-tclust
r-tensora
r-testit
r-testthat
r-th-data
r-threejs
r-tibble
r-tidycensus r-tidycensus: Create new package. (#6595) 2017-12-08 10:18:45 -07:00
r-tidyr
r-tiff
r-tigris r-tigris: Create new package. (#6591) 2017-12-08 10:18:11 -07:00
r-timedate
r-topgo
r-trimcluster
r-trust
r-tseries
r-tsne
r-ttr
r-udunits2 r-udunits2: new package r-udunits2 (#6533) 2017-12-01 11:16:35 +01:00
r-units r-units: new package (#6531) 2017-12-01 05:26:05 +01:00
r-utils
r-uuid
r-variantannotation
r-varselrf
r-vcd
r-vegan
r-vgam
r-viridis
r-viridislite
r-visnetwork
r-vsn
r-whisker
r-withr
r-xde
r-xgboost
r-xlconnect
r-xlconnectjars
r-xlsx
r-xlsxjars
r-xmapbridge
r-xml
r-xml2
r-xtable
r-xts
r-xvector
r-yaml
r-yapsa
r-yaqcaffy
r-yarn
r-zlibbioc
r-zoo
raft
raja
randfold
random123
randrproto
ravel
raxml
ray
rdp-classifier
readline
recordproto
redundans
relion relion - added new stable version 2.1 (#6706) 2017-12-18 10:38:20 -08:00
rempi
rename
rendercheck
renderproto
repeatmasker
resourceproto
revbayes
rgb
rhash
rlwrap
rmlab Add: lines-are-beautiful (#6784) 2017-12-30 12:29:27 -08:00
rna-seqc RNA-SeQC: Create new package (#6555) 2018-01-04 09:07:29 -06:00
rockstar
root
rose
rr
rsbench
rsem rsem: update version 1.3.0 md5sum (#6650) 2018-01-02 21:15:40 -06:00
rstart
rsync
rtags
rtax
ruby new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
ruby-gnuplot new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
ruby-narray new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
ruby-rubyinline new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
ruby-terminal-table new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
rust
rust-bindgen
sabre
salmon salmon: Add version 0.9.1 (#6516) 2017-12-02 12:45:10 -07:00
sambamba
samrai
samtools
sandbox
sas
satsuma2
savanna
saws
sbt
scala
scalasca
scalpel
scan-for-matches new packages: biopieces and dependencies (#6478) 2017-12-12 18:35:13 -08:00
scons
scorec-core
scorep
scotch
scr update scr package for cray (#6407) 2017-11-28 10:33:45 -08:00
screen
scripts
scrnsaverproto
sctk
sdl2
sdl2-image
sed
seqprep
seqtk
serf
sessreg
setxkbmap
sga
shapeit
shared-mime-info
shiny-server
shortstack
showfont
sickle
siesta
signalp
signify Add new package signify (#6645) 2017-12-16 19:47:59 -07:00
silo
simplemoc
simul
simulationio
singularity singularity - added master branch (#6631) 2018-01-02 21:47:21 -06:00
slepc slepc: add 3.8.2 (#6724) 2017-12-19 15:40:30 +01:00
slurm
smalt
smc
smproxy
snakemake
snap
snap-berkeley
snap-korf
snappy
snbone
sniffles
snptest
soap2
soapindel
soapsnp
somatic-sniper
sortmerna
sosflow
sowing
sox
spades SPAdes: add version 3.11.1 (#6668) 2017-12-13 08:57:29 +01:00
spark
sparsehash
sparta
spdlog
spectrum-mpi Set SMPI library path in dependent packages (#6548) 2018-01-04 09:10:37 -06:00
speex
sph2pipe
spherepack
spindle
spot
sqlite sqlite package: apply B0 patch to additional versions (#6728) 2017-12-19 11:06:39 -08:00
squid
sra-toolkit
sspace-longread
sspace-standard
sst-dumpi
sst-macro
stacks
staden-io-lib
star
star-ccm-plus
startup-notification Added i3 and its dependencies. (#6805) 2018-01-04 14:45:25 -06:00
stat
stc
stream
strelka
stress
stringtie
structure
sublime-text
subread subread: Add version 1.6.0 (#6615) 2017-12-08 10:26:18 +01:00
subversion
suite-sparse suite-sparse: support 64bit BLAS (#6767) 2018-01-03 09:58:19 -06:00
sumaclust
sundials
superlu
superlu-dist
superlu-mt
sw4lite
swarm
swfft swfft: inject CC/CXX (#6666) 2017-12-12 17:25:48 -07:00
swiftsim
swig
symengine
sympol
sz
tabix
talloc
tantan new package: tantan (#6792) 2018-01-02 12:00:13 -08:00
tar
targetp
task
taskd
tasmanian tasmanian: add new package (#6659) 2017-12-13 16:01:51 +01:00
tassel
tau
tcl
tcoffee
tcsh
tealeaf
tetgen
tethex
texinfo
texlive
the-platinum-searcher
the-silver-searcher
thrift
thrust
tig
tinyxml
tinyxml2
tioga Tioga package: Explicitly list MPI compilers for Cmake (#6741) 2018-01-02 13:14:22 -08:00
tk
tmalign
tmhmm
tmux Update tmux to 2.6 (#6597) 2017-12-08 10:13:22 -07:00
tmuxinator
tophat
tppred
transabyss
transdecoder
transposome
transset
trapproto
tree
trf
triangle
trilinos Update CGNS and add CGNS capability to Trilinos (#6568) 2017-12-05 14:33:36 -07:00
trimgalore
trimmomatic
turbine
turbomole
tut
twm
tycho2
typhonio
uberftp
ucx
udunits2
ufo-core
ufo-filters
uncrustify
unibilium
unison
units
unixodbc
usearch
util-linux
util-macros
uuid
valgrind
vampirtrace
vardictjava
varscan
vc
vcftools
vcsh
vdt
vecgeom
veclibfort
vegas2
velvet
videoproto
viennarna
viewres
vim Update vim to 8.0.1376 (#6599) 2017-12-08 10:29:50 +01:00
virtualgl
visit
vizglow
vmatch
voropp
votca-csg
votca-ctp
votca-moo
votca-tools
votca-xtp
vpfft
vpic
vsearch
vtk
vtkh updates to conduit and ascent packages (new PR) (#6584) 2017-12-08 13:43:12 -08:00
vtkm
wannier90
wget
windowswmproto
wt
wx wxWidgets: Fix builds (#6560) 2017-12-07 08:33:08 +01:00
wxpropgrid
x11perf
xapian-core
xauth
xbacklight
xbiff
xbitmaps
xcalc
xcb-demo
xcb-proto
xcb-util
xcb-util-cursor
xcb-util-errors
xcb-util-image
xcb-util-keysyms
xcb-util-renderutil
xcb-util-wm
xcb-util-xrm Added i3 and its dependencies. (#6805) 2018-01-04 14:45:25 -06:00
xclip
xclipboard
xclock
xcmiscproto
xcmsdb
xcompmgr
xconsole
xcursor-themes
xcursorgen
xdbedizzy
xditview
xdm
xdpyinfo
xdriinfo
xedit
xerces-c
xev
xextproto
xeyes
xf86bigfontproto
xf86dga
xf86dgaproto
xf86driproto
xf86miscproto
xf86rushproto
xf86vidmodeproto
xfd
xfindproxy
xfontsel
xfs
xfsinfo
xfwp
xgamma
xgc
xhost
xineramaproto
xinit
xinput
xios xios: I/O management for climate models (#6796) 2018-01-04 08:58:24 -06:00
xkbcomp
xkbdata
xkbevd
xkbprint
xkbutils
xkeyboard-config
xkill
xload
xlogo
xlsatoms
xlsclients
xlsfonts
xmag
xman
xmessage
xmh
xmlf90 atom-dft: new package plus dependencies (#6653) 2018-01-02 20:32:37 -06:00
xmlto
xmodmap
xmore
xorg-cf-files
xorg-docs
xorg-gtest
xorg-server
xorg-sgml-doctools
xphelloworld
xplor-nih
xplsprinters
xpr
xprehashprinterlist
xprop
xproto
xproxymanagementprotocol
xqilla
xrandr
xrdb
xrefresh
xrootd Adding openssl dependency to xrootd. Closes #6601 (#6618) 2017-12-08 10:33:08 +01:00
xrx
xsbench
xscope
xsdk xsdk: update xsdk@develop to use sundials, plasma, magma (#6649) 2017-12-12 09:31:08 -08:00
xsdktrilinos
xset
xsetmode
xsetpointer
xsetroot
xsimd Add Maintainer (#6575) 2017-12-05 14:27:56 -07:00
xsm
xstdcmap
xtensor Add Maintainer (#6575) 2017-12-05 14:27:56 -07:00
xterm
xtl Add Maintainer (#6575) 2017-12-05 14:27:56 -07:00
xtrans
xtrap
xts
xvidtune
xvinfo
xwd
xwininfo
xwud
xz
yajl
yaml-cpp
yasm
yorick
z3
zeromq
zfp
zip
zlib
zoltan
zsh Update zsh to 5.4.2 (#6609) 2017-12-08 10:19:40 -07:00
zstd