e941f33eaf
* meraculous: new package * adding gcc version conflict * Update package.py * Update package.py
51 lines
2.1 KiB
Python
51 lines
2.1 KiB
Python
##############################################################################
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# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Meraculous(CMakePackage):
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"""Meraculous is a while genome assembler for Next Generation Sequencing
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data geared for large genomes."""
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homepage = "http://jgi.doe.gov/data-and-tools/meraculous/"
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url = "https://downloads.sourceforge.net/project/meraculous20/Meraculous-v2.2.4.tar.gz"
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version('2.2.4', '349feb6cb178643a46e4b092c87bad3a')
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depends_on('perl', type=('build', 'run'))
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depends_on('boost@1.5.0:')
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depends_on('gnuplot@3.7:')
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depends_on('perl-log-log4perl', type=('build', 'run'))
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conflicts('%gcc@6.0.0:', when='@2.2.4')
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def patch(self):
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edit = FileFilter('CMakeLists.txt')
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edit.filter("-static-libstdc\+\+", "")
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def setup_environment(self, spack_env, run_env):
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run_env.set('MERACULOUS_ROOT', self.prefix)
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run_env.prepend_path('PERL5LIB', self.prefix.lib)
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