25 lines
759 B
Python
25 lines
759 B
Python
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
|
|
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
#
|
|
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
|
|
from spack.package import *
|
|
|
|
|
|
class Fermikit(MakefilePackage):
|
|
"""De novo assembly based variant calling pipeline for Illumina short
|
|
reads"""
|
|
|
|
homepage = "https://github.com/lh3/fermikit"
|
|
git = "https://github.com/lh3/fermikit.git"
|
|
|
|
version("2017-11-7", commit="bf9c7112221577ba110665bddca8f1987250bdc7", submodules=True)
|
|
|
|
depends_on("zlib")
|
|
depends_on("sse2neon", when="target=aarch64:")
|
|
|
|
patch("ksw_for_aarch64.patch", when="target=aarch64:")
|
|
|
|
def install(self, spec, prefix):
|
|
install_tree("fermi.kit", prefix.bin)
|