eea786f4e8
- remove the old LGPL license headers from all files in Spack - add SPDX headers to all files - core and most packages are (Apache-2.0 OR MIT) - a very small number of remaining packages are LGPL-2.1-only
35 lines
1.2 KiB
Python
35 lines
1.2 KiB
Python
# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Orthofinder(Package):
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"""OrthoFinder is a fast, accurate and comprehensive analysis tool for
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comparative genomics.
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It finds orthologues and orthogroups infers rooted gene trees for all
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orthogroups and infers a rooted species tree for the species being
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analysed. OrthoFinder also provides comprehensive statistics for
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comparative genomic analyses. OrthoFinder is simple to use and all you
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need to run it is a set of protein sequence files (one per species)
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in FASTA format."""
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homepage = "https://github.com/davidemms/OrthoFinder"
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url = "https://github.com/davidemms/OrthoFinder/releases/download/2.2.0/OrthoFinder-2.2.0.tar.gz"
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version('2.2.0', '4ff585e1eb148fc694a219296fbdd431')
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depends_on('blast-plus', type='run')
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depends_on('mcl', type='run')
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depends_on('fastme', type='run')
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depends_on('py-dlcpar', type='run')
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def install(self, spec, prefix):
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install_tree('.', prefix.bin)
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chmod = which('chmod')
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chmod('+x', join_path(prefix.bin, 'orthofinder'))
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