35 lines
1.7 KiB
Python
35 lines
1.7 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RGdsfmt(RPackage):
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"""R Interface to CoreArray Genomic Data Structure (GDS) Files.
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This package provides a high-level R interface to CoreArray Genomic Data
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Structure (GDS) data files, which are portable across platforms with
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hierarchical structure to store multiple scalable array-oriented data
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sets with metadata information. It is suited for large-scale datasets,
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especially for data which are much larger than the available random-
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access memory. The gdsfmt package offers the efficient operations
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specifically designed for integers of less than 8 bits, since a diploid
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genotype, like single-nucleotide polymorphism (SNP), usually occupies
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fewer bits than a byte. Data compression and decompression are available
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with relatively efficient random access. It is also allowed to read a
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GDS file in parallel with multiple R processes supported by the package
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parallel."""
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homepage = "https://bioconductor.org/packages/gdsfmt"
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git = "https://git.bioconductor.org/packages/gdsfmt.git"
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version('1.20.0', commit='b1fbaba0a5ace3dc45daecc85168651cd85dce00')
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version('1.18.1', commit='b911b953e9db7988e93ec2010b0ab1e384d073c9')
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version('1.16.0', commit='49b011452585e432b983b68466a230c9b71d8a95')
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version('1.14.1', commit='15743647b7eea5b82d3284858b4591fb6e59959d')
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version('1.12.0', commit='d705a95b0bea7be2a2b37e939f45017337ba0fb6')
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depends_on('r@2.15.0:', type=('build', 'run'))
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