37 lines
1.7 KiB
Python
37 lines
1.7 KiB
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class RGosemsim(RPackage):
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"""GO-terms Semantic Similarity Measures.
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The semantic comparisons of Gene Ontology (GO) annotations provide
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quantitative ways to compute similarities between genes and gene groups,
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and have became important basis for many bioinformatics analysis
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approaches. GOSemSim is an R package for semantic similarity computation
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among GO terms, sets of GO terms, gene products and gene clusters.
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GOSemSim implemented five methods proposed by Resnik, Schlicker, Jiang,
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Lin and Wang respectively."""
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bioc = "GOSemSim"
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version("2.22.0", commit="fd74aeba2371ebf9db0595cf18674441bdac9618")
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version("2.20.0", commit="fa82442aaa4ad1a8dacc05ee2c54f5e5e770a794")
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version("2.16.1", commit="92f1d567f3584fe488f434abce87c2e1950081c0")
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version("2.10.0", commit="5db1ecbf2f8d870430d6e587609327d05ba3ad7b")
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version("2.8.0", commit="c8c985b2a814cc2365c7f05b2509205e1b6b7f58")
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version("2.6.2", commit="2ffe78e89276e804306554965fc0799318ec56ed")
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version("2.4.1", commit="0656e845860d14e054670ffc246a1c53f699299c")
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version("2.2.0", commit="247434790e6c8cf99e5643f569390362b8c87c52")
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depends_on("r@3.3.2:", type=("build", "run"))
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depends_on("r@3.4.0:", type=("build", "run"), when="@2.8.0:")
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depends_on("r@3.5.0:", type=("build", "run"), when="@2.16.1:")
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depends_on("r-annotationdbi", type=("build", "run"))
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depends_on("r-go-db", type=("build", "run"))
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depends_on("r-rcpp", type=("build", "run"))
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