32 lines
1.3 KiB
Python
32 lines
1.3 KiB
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class RWatermelon(RPackage):
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"""Illumina 450 methylation array normalization and metrics.
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15 flavours of betas and three performance metrics, with methods for
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objects produced by methylumi and minfi packages."""
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bioc = "wateRmelon"
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version("2.2.0", commit="6ec49efe98aef31d0789b31ab048eb46edec762c")
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version("2.0.0", commit="f6a331bdf50e0e5c94009fb67be873d996348ade")
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version("1.34.0", commit="3fa2745535c22068a438747b41b9d793196098d4")
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version("1.30.0", commit="66d7579fe49206d965832288df7937c3d43ed578")
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depends_on("r@2.10:", type=("build", "run"))
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depends_on("r@3.5.0:", type=("build", "run"), when="@2.0.0:")
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depends_on("r-biobase", type=("build", "run"))
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depends_on("r-limma", type=("build", "run"))
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depends_on("r-matrixstats", type=("build", "run"))
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depends_on("r-methylumi", type=("build", "run"))
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depends_on("r-lumi", type=("build", "run"))
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depends_on("r-roc", type=("build", "run"))
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depends_on("r-illuminahumanmethylation450kanno-ilmn12-hg19", type=("build", "run"))
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depends_on("r-illuminaio", type=("build", "run"))
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