49 lines
2.1 KiB
Python
49 lines
2.1 KiB
Python
##############################################################################
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# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/llnl/spack
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# Please also see the LICENSE file for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Sabre(MakefilePackage):
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"""Sabre is a tool that will demultiplex barcoded reads into separate
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files. It will work on both single-end and paired-end data in fastq
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format. It simply compares the provided barcodes with each read and
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separates the read into its appropriate barcode file, after stripping
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the barcode from the read (and also stripping the quality values of
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the barcode bases). If a read does not have a recognized barcode,
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then it is put into the unknown file.
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"""
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homepage = "https://github.com/najoshi/sabre"
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url = "https://github.com/najoshi/sabre"
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version('2013-09-27', git='https://github.com/najoshi/sabre.git', commit='039a55e500ba07b7e6432ea6ec2ddcfb3471d949')
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depends_on('zlib')
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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install('sabre', prefix.bin)
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