35 lines
1.3 KiB
Python
35 lines
1.3 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class PyFlye(PythonPackage):
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"""Fast and accurate de novo assembler for single molecule sequencing
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reads"""
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homepage = "https://github.com/fenderglass/Flye"
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url = "https://github.com/fenderglass/Flye/archive/2.6.tar.gz"
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version('2.6', sha256='5bdc44b84712794fa4264eed690d8c65c0d72f495c7bbf2cd15b634254809131')
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version('2.4.2', sha256='5b74d4463b860c9e1614ef655ab6f6f3a5e84a7a4d33faf3b29c7696b542c51a')
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# https://github.com/fenderglass/Flye/blob/flye/docs/INSTALL.md
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depends_on('python@2.7:2.8,3.5:', when='@2.6:', type=('build', 'run'))
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depends_on('python@2.7:2.8', when='@:2.5', type=('build', 'run'))
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depends_on('py-setuptools', when='@2.6:', type='build')
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depends_on('gmake', type='build')
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depends_on('zlib')
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msg = 'C++ compiler with C++11 support required'
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conflicts('%gcc@:4.7', msg=msg)
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conflicts('%clang@:3.2', msg=msg)
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# Requires Apple Clang 5.0+ but no way to specify that right now
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def setup_build_environment(self, env):
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if self.spec.target.family == 'aarch64':
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env.set('arm_neon', '1')
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env.set('aarch64', '1')
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