eea786f4e8
- remove the old LGPL license headers from all files in Spack - add SPDX headers to all files - core and most packages are (Apache-2.0 OR MIT) - a very small number of remaining packages are LGPL-2.1-only
27 lines
1.0 KiB
Python
27 lines
1.0 KiB
Python
# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
|
|
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
#
|
|
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
|
|
from spack import *
|
|
|
|
|
|
class Discovardenovo(AutotoolsPackage):
|
|
"""DISCOVAR de novo is a large (and small) de novo genome assembler.
|
|
It quickly generates highly accurate and complete assemblies using the
|
|
same single library data as used by DISCOVAR. It currently doesn't
|
|
support variant calling, for that, please use DISCOVAR instead."""
|
|
|
|
homepage = "https://software.broadinstitute.org/software/discovar/blog/"
|
|
url = "ftp://ftp.broadinstitute.org/pub/crd/DiscovarDeNovo/latest_source_code/discovardenovo-52488.tar.gz"
|
|
|
|
version('52488', '2b08c77b1b998d85be8048e5efb10358')
|
|
|
|
# lots of compiler errors with GCC7, works with 4.8.5
|
|
# and devs claim it works with 4.7 so I'm assuming 4.7-4.8'll work
|
|
conflicts('%gcc@5:')
|
|
conflicts('%gcc@:4.7.0')
|
|
|
|
depends_on('samtools')
|
|
depends_on('jemalloc')
|