198 lines
8.1 KiB
Python
198 lines
8.1 KiB
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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from spack.util.environment import is_system_path
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class Silo(AutotoolsPackage):
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"""Silo is a library for reading and writing a wide variety of scientific
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data to binary, disk files."""
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homepage = "https://wci.llnl.gov/simulation/computer-codes/silo"
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url = "https://wci.llnl.gov/sites/wci/files/2021-01/silo-4.10.2.tgz"
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version('4.11', sha256='ab936c1f4fc158d9fdc4415965f7d9def7f4abeca596fe5a25bd8485654898ac',
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url="https://github.com/LLNL/Silo/releases/download/v4.11/silo-4.11.tar.gz")
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version('4.11-bsd', sha256='6d0a85a079d48fcdcc0084ecb5fc4cfdcc64852edee780c60cb244d16f4bc4ec',
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url="https://github.com/LLNL/Silo/releases/download/v4.11/silo-4.11-bsd.tar.gz")
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version('4.10.2', sha256='3af87e5f0608a69849c00eb7c73b11f8422fa36903dd14610584506e7f68e638', preferred=True)
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version('4.10.2-bsd', sha256='4b901dfc1eb4656e83419a6fde15a2f6c6a31df84edfad7f1dc296e01b20140e',
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url="https://wci.llnl.gov/sites/wci/files/2021-01/silo-4.10.2-bsd.tgz")
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version('4.9', sha256='90f3d069963d859c142809cfcb034bc83eb951f61ac02ccb967fc8e8d0409854')
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version('4.8', sha256='c430c1d33fcb9bc136a99ad473d535d6763bd1357b704a915ba7b1081d58fb21')
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variant('fortran', default=True, description='Enable Fortran support')
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variant('shared', default=True, description='Build shared libraries')
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variant('silex', default=False,
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description='Builds Silex, a GUI for viewing Silo files')
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variant('pic', default=True,
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description='Produce position-independent code (for shared libs)')
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variant('mpi', default=True,
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description='Compile with MPI Compatibility')
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variant('hdf5', default=True,
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description='Support HDF5 for database I/O')
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variant('hzip', default=True,
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description='Enable hzip support')
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variant('fpzip', default=True,
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description='Enable fpzip support')
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depends_on('m4', type='build', when='+shared')
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depends_on('autoconf', type='build', when='+shared')
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depends_on('automake', type='build', when='+shared')
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depends_on('libtool', type='build', when='+shared')
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depends_on('mpi', when='+mpi')
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depends_on('hdf5@1.8:', when='+hdf5')
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depends_on('qt+gui~framework@4.8:4.9', when='+silex')
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depends_on('libx11', when='+silex')
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# Xmu dependency is required on Ubuntu 18-20
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depends_on('libxmu', when='+silex')
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depends_on('readline')
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depends_on('zlib')
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patch('remove-mpiposix.patch', when='@4.8:4.10.2')
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patch('H5FD_class_t-terminate.patch', when='@:4.10.2 ^hdf5@1.10.0:')
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# H5EPR_SEMI_COLON.patch should be applied only to silo@4.11 when building
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# with hdf5@1.10.8 or later 1.10 or with hdf5@1.12.1 or later
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patch('H5EPR_SEMI_COLON.patch', when='@:4.11 ^hdf5@1.10.8:1.10,1.12.1:')
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conflicts('^hdf5@1.13:', when="+hdf5")
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conflicts('+hzip', when="@4.11-bsd")
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conflicts('+fpzip', when="@4.11-bsd")
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conflicts('+hzip', when="@4.10.2-bsd")
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conflicts('+fpzip', when="@4.10.2-bsd")
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def flag_handler(self, name, flags):
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spec = self.spec
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if name == 'ldflags':
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if '+hdf5' in spec:
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if spec['hdf5'].satisfies('~shared'):
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flags.append('-ldl')
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flags.append(spec['readline'].libs.search_flags)
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if '+pic' in spec:
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if name == 'cflags':
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flags.append(self.compiler.cc_pic_flag)
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elif name == 'cxxflags':
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flags.append(self.compiler.cxx_pic_flag)
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elif name == 'fcflags':
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flags.append(self.compiler.fc_pic_flag)
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if name == 'cflags':
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if '+hdf5' in spec:
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# @:4.10 can use up to the 1.10 API
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if '@:4.10' in spec:
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if '@1.10:' in spec['hdf5']:
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flags.append('-DH5_USE_110_API')
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else:
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# @4.11: can use newer HDF5 APIs, so this ensures silo is
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# presented with an HDF5 API consistent with the HDF5 version.
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# Use the latest even-numbered API version, i.e. v1.13.1 uses
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# API v1.12
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maj_ver = int(spec['hdf5'].version[0])
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min_ver = int(spec['hdf5'].version[1])
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min_apiver = int(min_ver / 2) * 2
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flags.append('-DH5_USE_{0}{1}_API'.format(maj_ver, min_apiver))
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if spec.compiler.name in ['clang', 'apple-clang']:
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flags.append('-Wno-implicit-function-declaration')
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return (flags, None, None)
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@when('%clang@9:')
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def patch(self):
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self.clang_9_patch()
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@when('%apple-clang@11.0.3:')
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def patch(self):
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self.clang_9_patch()
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def clang_9_patch(self):
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# Clang 9 and later include macro definitions in <math.h> that conflict
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# with typedefs DOMAIN and RANGE used in Silo plugins.
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# It looks like the upstream fpzip repo has been fixed, but that change
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# hasn't yet made it into silo.
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# https://github.com/LLNL/fpzip/blob/master/src/pcmap.h
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if str(self.spec.version).endswith('-bsd'):
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# The files below don't exist in the BSD licenced version
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return
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def repl(match):
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# Change macro-like uppercase to title-case.
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return match.group(1).title()
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files_to_filter = [
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"src/fpzip/codec.h",
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"src/fpzip/pcdecoder.inl",
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"src/fpzip/pcencoder.inl",
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"src/fpzip/pcmap.h",
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"src/fpzip/pcmap.inl",
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"src/fpzip/read.cpp",
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"src/fpzip/write.cpp",
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"src/hzip/hzmap.h",
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"src/hzip/hzresidual.h",
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]
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filter_file(r'\b(DOMAIN|RANGE|UNION)\b', repl, *files_to_filter)
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@property
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def force_autoreconf(self):
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# Update autoconf's tests whether libtool supports shared libraries.
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# (Otherwise, shared libraries are always disabled on Darwin.)
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if self.spec.satisfies('@4.11-bsd') or self.spec.satisfies('@4.10.2-bsd'):
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return False
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else:
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return self.spec.satisfies('+shared')
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def configure_args(self):
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spec = self.spec
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config_args = [
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'--enable-install-lite-headers',
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'--enable-fortran' if '+fortran' in spec else '--disable-fortran',
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'--enable-silex' if '+silex' in spec else '--disable-silex',
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'--enable-shared' if '+shared' in spec else '--disable-shared',
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'--enable-hzip' if '+hzip' in spec else '--disable-hzip',
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'--enable-fpzip' if '+fpzip' in spec else '--disable-fpzip',
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]
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# Do not specify the prefix of zlib if it is in a system directory
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# (see https://github.com/spack/spack/pull/21900).
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zlib_prefix = self.spec['zlib'].prefix
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if is_system_path(zlib_prefix):
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config_args.append('--with-zlib=yes')
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else:
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config_args.append(
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'--with-zlib=%s,%s' % (zlib_prefix.include,
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zlib_prefix.lib),
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)
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if '+hdf5' in spec:
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config_args.append(
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'--with-hdf5=%s,%s' % (spec['hdf5'].prefix.include,
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spec['hdf5'].prefix.lib),
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)
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if '+silex' in spec:
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x = spec['libx11']
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config_args.extend([
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'--with-Qt-dir=' + spec['qt'].prefix,
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'--with-Qt-lib=QtGui -lQtCore',
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'--x-includes=' + x.prefix.include,
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'--x-libraries=' + x.prefix.lib,
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])
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if '+mpi' in spec:
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config_args.append('CC=%s' % spec['mpi'].mpicc)
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config_args.append('CXX=%s' % spec['mpi'].mpicxx)
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config_args.append('FC=%s' % spec['mpi'].mpifc)
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return config_args
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@property
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def libs(self):
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shared = "+shared" in self.spec
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return find_libraries(
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"libsilo*", root=self.prefix, shared=shared, recursive=True
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)
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