41 lines
1.8 KiB
Python
41 lines
1.8 KiB
Python
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class RAlpine(RPackage):
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"""alpine.
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Fragment sequence bias modeling and correction for RNA-seq transcript
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abundance estimation."""
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bioc = "alpine"
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version("1.24.0", commit="7e734d49881761cafaacea096ce757531b6bd522")
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version("1.22.0", commit="6107a82962f07e0434e93f261cd375eaaa171d91")
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version("1.20.0", commit="9348ef14128aa6be10cca1987736ddbc385df7e9")
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version("1.16.0", commit="aee397774ac6cd17ad45dc05be14c526647f3c13")
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version("1.10.0", commit="bf22597eb2c6c6aaa26900ed4ece96ce7256e77c")
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version("1.8.0", commit="ddaa0b4517f0909460aa1bd33c8e43dc6c8d23d4")
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version("1.6.0", commit="ea55fcb3cedb5caa20d8264bb29a4975041f5274")
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version("1.4.0", commit="c85beb208fd6bfc0a61a483a98498b589640f946")
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version("1.2.0", commit="896872e6071769e1ac2cf786974edb8b875c45eb")
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depends_on("r@3.3:", type=("build", "run"))
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depends_on("r-biostrings", type=("build", "run"))
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depends_on("r-iranges", type=("build", "run"))
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depends_on("r-genomicranges", type=("build", "run"))
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depends_on("r-genomicalignments", type=("build", "run"))
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depends_on("r-rsamtools", type=("build", "run"))
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depends_on("r-summarizedexperiment", type=("build", "run"))
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depends_on("r-genomicfeatures", type=("build", "run"))
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depends_on("r-speedglm", type=("build", "run"))
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depends_on("r-graph", type=("build", "run"))
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depends_on("r-rbgl", type=("build", "run"))
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depends_on("r-stringr", type=("build", "run"))
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depends_on("r-genomeinfodb", type=("build", "run"))
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depends_on("r-s4vectors", type=("build", "run"))
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