35 lines
1.2 KiB
Python
35 lines
1.2 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Salmon(CMakePackage):
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"""Salmon is a tool for quantifying the expression of transcripts using
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RNA-seq data."""
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homepage = "http://combine-lab.github.io/salmon/"
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url = "https://github.com/COMBINE-lab/salmon/archive/v0.8.2.tar.gz"
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version('0.14.1', sha256='05289170e69b5f291a8403b40d6b9bff54cc38825e9f721c210192b51a19273e')
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version('0.12.0', sha256='91ebd1efc5b0b4c12ec6babecf3c0b79f7102e42b8895ca07c8c8fea869fefa3')
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version('0.9.1', '1277b8ed65d2c6982ed176a496a2a1e3')
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version('0.8.2', 'ee512697bc44b13661a16d4e14cf0a00')
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depends_on('tbb')
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depends_on('boost@:1.66.0')
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depends_on('curl', when='@0.14.1:')
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conflicts('%gcc@:5.1', when='@0.14.1:')
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def patch(self):
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# remove static linking to libstdc++
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filter_file('-static-libstdc++', '', 'CMakeLists.txt', string=True)
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def cmake_args(self):
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args = ['-DBOOST_ROOT=%s' % self.spec['boost'].prefix]
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return args
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