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43c1bb5f308b52aff74e243c84cea126568834b1
spack/var/spack/repos/builtin/packages
History
Yifan Zhu 43c1bb5f30 r-organismdbi: new package (#5997)
2017-10-28 12:11:44 -06:00
..
abinit
…
abyss
fixing abyss (#5973)
2017-10-28 17:05:52 +02:00
ack
…
activeharmony
…
adept-utils
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adios
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adios2
…
adlbx
…
adol-c
…
albert
…
alglib
…
allinea-forge
…
allinea-reports
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allpaths-lg
…
alquimia
…
alsa-lib
…
amg
Add a new package for AMG and fix build issues in the amg2013 package (#5909)
2017-10-24 21:06:33 -06:00
amg2013
Add a new package for AMG and fix build issues in the amg2013 package (#5909)
2017-10-24 21:06:33 -06:00
ampliconnoise
…
amr-exp-parabolic
…
amrex
fixing tag name for development branch (#5496)
2017-09-28 18:12:02 -07:00
andi
…
angsd
…
ant
…
antlr
…
ape
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apex
…
applewmproto
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appres
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apr
…
apr-util
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archer
…
argtable
…
armadillo
armadillo: use libs to provide arpack and superlu libraries (#5777)
2017-10-16 12:57:01 +02:00
arpack-ng
…
asciidoc
…
aspa
add newlines at end of some package files
2017-10-24 10:05:36 +02:00
aspell
Add package for aspell and ass't dictionaries (#3890)
2017-10-09 14:14:19 -07:00
aspell6-de
Add package for aspell and ass't dictionaries (#3890)
2017-10-09 14:14:19 -07:00
aspell6-en
Add package for aspell and ass't dictionaries (#3890)
2017-10-09 14:14:19 -07:00
aspell6-es
Add package for aspell and ass't dictionaries (#3890)
2017-10-09 14:14:19 -07:00
assimp
…
astra
…
astral
…
astyle
astyle: homepage dead, use mirror (#5483)
2017-09-26 13:03:34 -06:00
atk
…
atlas
remove wildcards from make spack core and packages
2017-10-24 10:05:36 +02:00
atompaw
…
atop
…
augustus
…
autoconf
autoconf, automake: Add missing perl dependency (#5187)
2017-09-26 08:10:22 -06:00
autodock-vina
Autodock vina: spec (#5333)
2017-09-26 14:44:21 -06:00
autogen
…
automaded
…
automake
autoconf, automake: Add missing perl dependency (#5187)
2017-09-26 08:10:22 -06:00
bamtools
…
bamutil
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bash
…
bash-completion
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bats
…
bazel
…
bbcp
…
bbmap
…
bcftools
Add old version to bcftools (#5907)
2017-10-25 12:20:42 +02:00
bcl2fastq2
bcl2fastq needs with working_dir: after changes in #5776 (#5803)
2017-10-19 08:59:25 +02:00
bdftopcf
…
bdw-gc
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bear
…
beast2
…
bedtools2
adding bedtools2 v2.23.0 (#5911)
2017-10-25 12:16:10 +02:00
beforelight
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benchmark
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berkeley-db
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bertini
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bib2xhtml
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bigreqsproto
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binutils
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bioawk
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bison
various fixes for macOS high sierra (#5647)
2017-10-12 11:41:57 -07:00
bitmap
…
blast-plus
…
blat
…
blaze
…
bliss
…
blitz
…
bml
Added support for BML+mpi variant (#5563)
2017-10-02 12:51:06 -06:00
boost
boost: remove duplicate patch (#5934)
2017-10-25 12:00:50 -07:00
boostmplcartesianproduct
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bowtie
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bowtie2
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boxlib
…
bpp-core
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bpp-phyl
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bpp-seq
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bpp-suite
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braker
…
branson
Added spackage for branson (#5520)
2017-09-27 21:50:07 -06:00
brigand
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bsseeker2
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bucky
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busco
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butter
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bwa
bwa: add 0.7.17 (#5902)
2017-10-25 12:21:18 +02:00
byobu
Byobu: new package (#5974)
2017-10-27 10:43:45 -07:00
bzip2
…
c-blosc
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caffe
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cairo
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caliper
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callpath
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cantera
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canu
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cap3
…
cares
…
cask
…
catch
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cbench
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cblas
…
cbtf
…
cbtf-argonavis
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cbtf-argonavis-gui
…
cbtf-krell
Add ability to build llvm-openmp-ompt alone, with gnu compilers and use the resulting ompt interface in cbtf-krell and openspeedshop to gather openmp specific performance information. (#5288)
2017-09-26 14:15:37 -06:00
cbtf-lanl
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ccache
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cctools
…
cdbfasta
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cdd
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cddlib
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cdhit
…
cdo
Update for 'cdo'. (#5947)
2017-10-25 13:24:19 +02:00
cereal
…
cfitsio
…
cgal
…
cgm
…
cgns
…
charm
Fix bare 'except:' to placate errors in new flake8 version.
2017-10-24 10:05:36 +02:00
check
…
chlorop
…
chombo
…
cityhash
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clamr
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cleaveland4
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cleverleaf
…
clfft
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clhep
…
cloc
Provide a new Perl package 'cloc'. (#5525)
2017-09-28 11:30:08 -06:00
cloog
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cloverleaf
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cloverleaf3d
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clustalo
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clustalw
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cmake
CMake: 3.9.4 (#5614)
2017-10-05 08:57:20 -06:00
cmocka
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cmor
…
cnmem
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cnpy
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cns-nospec
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cntk
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cntk1bitsgd
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codar-cheetah
…
coevp
Added CoEVP Spackage (#5485)
2017-09-27 21:41:34 -06:00
cohmm
add newlines at end of some package files
2017-10-24 10:05:36 +02:00
coinhsl
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comd
comd: add v1.1 (#5994)
2017-10-27 07:20:18 -06:00
compiz
…
compositeproto
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conduit
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constype
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converge
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coreutils
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corset
…
cosmomc
…
cosp2
add newlines at end of some package files
2017-10-24 10:05:36 +02:00
cp2k
…
cppad
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cppcheck
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cpprestsdk
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cppunit
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cppzmq
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cram
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cryptopp
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cscope
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csdp
…
cub
…
cube
…
cuda
CUDA 9.0.176 (#5562)
2017-10-02 10:47:32 -06:00
cuda-memtest
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cudnn
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cufflinks
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cups
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curl
adding http2 support (#5628)
2017-10-07 09:58:56 -06:00
cvs
…
czmq
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dakota
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daligner
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damageproto
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damselfly
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darshan-runtime
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darshan-util
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dash
…
datamash
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dataspaces
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dbus
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dealii
dealii: blacklist boost 1.64 and 1.65 (#5805)
2017-10-18 15:58:05 -06:00
dejagnu
…
delly2
delly2: new package (#5820)
2017-10-25 13:55:13 +02:00
dia
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dialign-tx
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direnv
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discovar
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dlpack
Add a package: dmlc/mxnet. (#3579)
2017-10-10 13:56:26 -07:00
dmlc-core
Add a package: dmlc/mxnet. (#3579)
2017-10-10 13:56:26 -07:00
dmxproto
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docbook-xml
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docbook-xsl
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dos2unix
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double-conversion
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doxygen
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dri2proto
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dri3proto
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dtcmp
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dyninst
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ea-utils
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easybuild
…
ebms
…
eccodes
Update for 'eccodes'. (#5899)
2017-10-25 13:48:55 +02:00
ecp-proxy-apps
ecp-proxy-apps: add more package (#6003)
2017-10-27 08:34:52 -06:00
editres
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eigen
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elemental
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elfutils
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elk
…
elpa
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emacs
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emboss
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encodings
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environment-modules
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es
…
esmf
esmf: Fix build (#5607)
2017-10-05 08:58:40 -06:00
espresso
qmcpack: new package (#4907)
2017-10-06 13:51:18 -07:00
etsf-io
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everytrace
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everytrace-example
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evieext
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exabayes
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exampm
ExaMPM (#5509)
2017-09-27 21:46:32 -06:00
exasp2
ExaSP2 Spackage (#5570)
2017-10-03 16:04:49 -06:00
exmcutils
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exodusii
Exodus: skip the -G "Unix Makefiles" part (#5906)
2017-10-26 13:50:18 -06:00
exonerate
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expat
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expect
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extrae
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exuberant-ctags
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f90cache
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falcon
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farmhash
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fastjar
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fastmath
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fastphase
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fastq-screen
fastq-screen: new package (#5431)
2017-09-28 12:48:31 -06:00
fastqc
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fastqvalidator
switching downloads to git (#5659)
2017-10-09 17:07:13 -06:00
fastx-toolkit
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fenics
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ferret
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ffmpeg
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fftw
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fimpute
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findutils
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fio
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fish
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fixesproto
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flac
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flang
flang: fixed llvm dep (#5948)
2017-10-26 09:34:33 +02:00
flann
flann: fix build for 1.8.1 (#5508)
2017-09-27 14:39:33 -07:00
flash
…
flecsale
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flecsi
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flex
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flint
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fltk
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flux
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fmt
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foam-extend
remove wildcards from make spack core and packages
2017-10-24 10:05:36 +02:00
folly
…
font-adobe-75dpi
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font-adobe-100dpi
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font-adobe-utopia-75dpi
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font-adobe-utopia-100dpi
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font-adobe-utopia-type1
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font-alias
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font-arabic-misc
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font-bh-75dpi
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font-bh-100dpi
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font-bh-lucidatypewriter-75dpi
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font-bh-lucidatypewriter-100dpi
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font-bh-ttf
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font-bh-type1
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font-bitstream-75dpi
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font-bitstream-100dpi
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font-bitstream-speedo
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font-bitstream-type1
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font-cronyx-cyrillic
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font-cursor-misc
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font-daewoo-misc
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font-dec-misc
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font-ibm-type1
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font-isas-misc
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font-jis-misc
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font-micro-misc
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font-misc-cyrillic
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font-misc-ethiopic
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font-misc-meltho
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font-misc-misc
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font-mutt-misc
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font-schumacher-misc
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font-screen-cyrillic
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font-sony-misc
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font-sun-misc
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font-util
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font-winitzki-cyrillic
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font-xfree86-type1
…
fontcacheproto
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fontconfig
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fontsproto
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fonttosfnt
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freebayes
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freetype
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fseq
…
fsl
fsl: new package (#5605)
2017-10-05 11:57:57 -07:00
fslsfonts
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fstobdf
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funhpc
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gapcloser
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gapfiller
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gasnet
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gaussian
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gawk
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gblocks
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gcc
various fixes for macOS high sierra (#5647)
2017-10-12 11:41:57 -07:00
gccmakedep
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gccxml
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gconf
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gdal
…
gdb
…
gdbm
gdbm: pass in proper CPPFLAGS (#5893)
2017-10-25 07:09:41 +02:00
gdk-pixbuf
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geant4
…
gearshifft
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gemmlowp
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genemark-et
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genometools
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geos
…
gettext
gettext: fix prefix (#5749)
2017-10-13 10:52:55 +02:00
gflags
…
ghostscript
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ghostscript-fonts
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giflib
…
git
git + luafilesystem: minor fixes (#5635)
2017-10-06 13:56:14 -06:00
git-lfs
…
gl2ps
…
glew
…
glib
Missing perl dependencies (#5204)
2017-09-26 07:27:28 -06:00
glm
…
global
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globalarrays
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globus-toolkit
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glog
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glpk
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glproto
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gmake
…
gmap-gsnap
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gmime
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gmp
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gmsh
…
gnat
…
gnu-prolog
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gnupg
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gnuplot
gnuplot: add 5.2.0 and 5.0.7 (#5979)
2017-10-27 08:20:34 +02:00
gnutls
…
go
Add info for go@1.9.2 (#5989)
2017-10-27 08:13:33 +02:00
go-bootstrap
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gobject-introspection
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googletest
…
gource
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gperf
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gperftools
…
grackle
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gradle
…
grandr
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graphlib
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graphmap
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graphviz
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grib-api
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groff
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gromacs
…
gsl
gsl: add 2.4 (#5768)
2017-10-14 16:39:43 -06:00
gtkorvo-atl
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gtkorvo-cercs-env
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gtkorvo-dill
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gtkorvo-enet
…
gtkplus
…
gts
…
guile
…
h5hut
…
h5part
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h5utils
…
h5z-zfp
…
hacckernels
Added hacckernels package (#5533)
2017-09-28 12:46:26 -06:00
hadoop
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hapcut2
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haploview
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harfbuzz
…
harminv
…
hdf
…
hdf5
Update for 'hdf5'. (#5790)
2017-10-24 11:09:08 +02:00
hdf5-blosc
Fix bare 'except:' to placate errors in new flake8 version.
2017-10-24 10:05:36 +02:00
help2man
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hepmc
…
heppdt
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highfive
…
highwayhash
…
hisat2
hisat2: new package (#5488)
2017-10-02 10:27:06 -07:00
hmmer
…
hoomd-blue
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hpccg
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hpctoolkit
…
hpctoolkit-externals
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hpgmg
new package: hpgmg (#4888)
2017-10-20 17:34:55 -07:00
hpl
…
hpx
…
hpx5
…
hsakmt
…
hstr
…
htop
…
htslib
Add old version to bcftools (#5907)
2017-10-25 12:20:42 +02:00
httpie
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hub
…
hunspell
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hwloc
…
hybpiper
…
hydra
…
hypre
hypre: make mpi dependency optional (#5905)
2017-10-24 18:53:12 -07:00
ibmisc
…
iceauth
…
icedtea
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icet
…
ico
…
icu4c
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id3lib
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idba
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igraph
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ilmbase
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image-magick
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imake
…
impute2
…
infernal
…
inputproto
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intel
…
intel-daal
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intel-gpu-tools
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intel-ipp
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intel-mkl
qmcpack: new package (#4907)
2017-10-06 13:51:18 -07:00
intel-mpi
…
intel-parallel-studio
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intel-tbb
intel-tbb: add 2018.1 (#5769)
2017-10-14 16:40:23 -06:00
intltool
…
ior
…
iozone
…
ipopt
…
isaac
…
isaac-server
…
isl
…
itstool
…
itsx
…
jags
…
jansson
jansson: enable shared library (#5857)
2017-10-23 13:32:51 +02:00
jasper
…
jdk
…
jemalloc
…
jmol
…
jq
…
json-c
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jsoncpp
…
judy
…
julia
…
kahip
…
kaks-calculator
kaks-calculator: new package (#5725)
2017-10-12 12:47:11 -06:00
kaldi
…
kallisto
…
kbproto
…
kdiff3
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kealib
…
kentutils
…
kmergenie
…
kokkos
…
krims
Add krims and lazyten (#5771)
2017-10-15 11:45:11 -06:00
kripke
…
laghos
Laghos: new package (#5956)
2017-10-26 09:18:57 -06:00
lammps
lammps: add user-omp package (#5486)
2017-09-27 12:46:58 -07:00
last
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latte
…
launchmon
…
lazyten
Add krims and lazyten (#5771)
2017-10-15 11:45:11 -06:00
lbann
Lbann flags (#5747)
2017-10-12 20:23:38 -06:00
lbxproxy
…
lcals
…
lcms
…
ldc
…
ldc-bootstrap
…
legion
legion: add v17.10.0 (#6019)
2017-10-28 12:09:39 -06:00
leveldb
…
lftp
…
libaec
libaec: add v1.0.2 and generic url (#6017)
2017-10-27 18:22:27 -06:00
libaio
…
libapplewm
…
libarchive
…
libassuan
…
libatomic-ops
…
libbeagle
…
libbsd
…
libbson
libbson, libmongoc: Update to 1.8.0 (#5478)
2017-09-27 10:19:10 -06:00
libcanberra
…
libcap
…
libcerf
…
libcircle
…
libconfig
…
libctl
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libdivsufsort
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libdmx
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libdrm
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libdwarf
…
libedit
…
libelf
…
libemos
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libepoxy
…
libevent
…
libevpath
…
libfabric
…
libffi
…
libffs
…
libfontenc
…
libfs
…
libgcrypt
…
libgd
…
libgit2
…
libgpg-error
…
libgpuarray
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libgtextutils
…
libharu
…
libhio
…
libice
…
libiconv
…
libint
…
libjpeg
…
libjpeg-turbo
…
libksba
…
liblbxutil
…
libmatheval
…
libmesh
…
libmng
…
libmongoc
libbson, libmongoc: Update to 1.8.0 (#5478)
2017-09-27 10:19:10 -06:00
libmonitor
…
libnbc
…
libogg
…
liboldx
…
libpcap
Initial version of libpcap (#5710)
2017-10-12 07:00:21 -06:00
libpciaccess
…
libpfm4
…
libpipeline
…
libpng
libpng: zlib flags more elegant (#5656)
2017-10-09 21:46:10 +02:00
libpsl
Add test deptype (#5132)
2017-09-29 22:08:15 -07:00
libpthread-stubs
…
libquo
liquo: added 1.3 and develop (#5781)
2017-10-17 01:36:54 -07:00
libsigsegv
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libsm
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libsodium
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libspatialindex
…
libsplash
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libssh2
…
libsvm
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libszip
…
libtermkey
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libtiff
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libtool
…
libunistring
…
libunwind
…
libuuid
…
libuv
…
libvorbis
…
libvterm
…
libwebsockets
…
libwindowswm
…
libx11
Add link dependency on xproto to xau (recent dependency mechanics changes?) (#5624)
2017-10-05 16:53:12 -06:00
libxau
Add link dependency on xproto to xau (recent dependency mechanics changes?) (#5624)
2017-10-05 16:53:12 -06:00
libxaw
…
libxaw3d
…
libxc
…
libxcb
…
libxcomposite
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libxcursor
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libxdamage
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libxdmcp
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libxevie
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libxext
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libxfixes
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libxfont
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libxfont2
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libxfontcache
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libxft
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libxi
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libxinerama
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libxkbfile
…
libxkbui
…
libxml2
libxml2: use spack's xz (#5816)
2017-10-19 08:32:37 +02:00
libxmu
…
libxp
…
libxpm
…
libxpresent
…
libxprintapputil
…
libxprintutil
…
libxrandr
…
libxrender
Add link dependency on xproto to xau (recent dependency mechanics changes?) (#5624)
2017-10-05 16:53:12 -06:00
libxres
…
libxscrnsaver
…
libxshmfence
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libxslt
…
libxsmm
…
libxstream
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libxt
…
libxtrap
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libxtst
…
libxv
…
libxvmc
…
libxxf86dga
…
libxxf86misc
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libxxf86vm
…
libyogrt
…
libzip
…
likwid
likwid: update versions (#5757)
2017-10-13 16:08:49 -06:00
linkphase3
linkphase3: new package (#5493)
2017-10-02 12:36:39 -06:00
linux-headers
…
listres
…
llvm
Add option to install clang python bindings to llvm (#5774)
2017-10-26 01:46:03 +02:00
llvm-lld
…
llvm-openmp-ompt
Add ability to build llvm-openmp-ompt alone, with gnu compilers and use the resulting ompt interface in cbtf-krell and openspeedshop to gather openmp specific performance information. (#5288)
2017-09-26 14:15:37 -06:00
lmdb
…
lmod
…
lndir
…
log4cxx
…
lrslib
…
lrzip
…
lua
…
lua-bitlib
…
lua-jit
…
lua-lpeg
…
lua-luafilesystem
git + luafilesystem: minor fixes (#5635)
2017-10-06 13:56:14 -06:00
lua-luaposix
…
lua-mpack
…
luit
…
lulesh
add newlines at end of some package files
2017-10-24 10:05:36 +02:00
lwgrp
…
lwm2
…
lz4
…
lzma
…
lzo
…
m4
Revert "Use cflags instead of the args variable (#5756)" (#5765)
2017-10-14 13:55:02 +02:00
mad-numdiff
…
mafft
…
magics
…
magma
…
makedepend
…
mallocmc
…
man-db
…
mariadb
…
masa
Masa requires python if +python. (#5547)
2017-09-29 16:14:12 -06:00
matio
…
matlab
…
maven
maven: new version (#5631)
2017-10-06 13:53:56 -06:00
maverick
…
mawk
…
mbedtls
…
mcl
…
mdtest
…
meep
…
memaxes
…
meme
…
mercurial
…
mesa
…
mesa-glu
…
meshkit
…
meson
…
mesquite
…
metaphysicl
Add metaphysicl package (#5539)
2017-09-28 18:02:07 -07:00
metis
…
mfem
Laghos: new package (#5956)
2017-10-26 09:18:57 -06:00
microbiomeutil
…
miniaero
…
miniamr
miniamr: bump to v1.4.0 (#5975)
2017-10-26 19:51:50 -06:00
miniconda2
…
miniconda3
…
minife
minife: version bump to v2.1.0 (#5985)
2017-10-26 11:45:40 -06:00
minighost
…
minigmg
…
minimap2
minimap2: new package (#5722)
2017-10-12 10:07:42 -06:00
minimd
…
minismac2d
…
minitri
adding miniTri miniapp (#5935)
2017-10-25 15:49:22 -06:00
minixyce
…
mirdeep
…
mitofates
…
mitos
…
mkfontdir
…
mkfontscale
…
mlhka
…
moab
…
molcas
…
mono
…
mosh
…
mothur
…
mozjs
…
mpc
…
mpe2
…
mpest
…
mpfr
Tell configure about gmp (#5585)
2017-10-03 14:40:14 -06:00
mpibash
…
mpiblast
…
mpich
Additional MPICH configs (#5259)
2017-09-27 10:50:05 -07:00
mpifileutils
…
mpileaks
…
mpip
…
mpir
…
mpix-launch-swift
…
mrbayes
…
mrnet
…
mrtrix3
mrtrix3: new package (#5568)
2017-10-02 15:56:15 -06:00
msgpack-c
…
mshadow
Add a package: dmlc/mxnet. (#3579)
2017-10-10 13:56:26 -07:00
multitail
Add package for multitail@6.4.2 (#5567)
2017-10-03 16:05:19 -06:00
multiverso
…
mummer
…
mumps
…
munge
…
muparser
…
muscle
…
muse
…
muster
…
mvapich2
…
mxml
…
mxnet
Add a package: dmlc/mxnet. (#3579)
2017-10-10 13:56:26 -07:00
nag
…
nalu
Adding openfast variant to nalu. (#5675)
2017-10-09 20:10:47 -06:00
namd
…
nano
…
nanoflann
…
nasm
…
nauty
Patches are hashed with specs, and can be associated with dependencies.
2017-09-30 02:06:59 -07:00
nccl
…
nccmp
…
ncdu
…
ncftp
…
ncl
ncl: Fix temp directory and depend on esmf (#5636)
2017-10-06 13:53:05 -06:00
nco
…
ncurses
…
ncview
…
ndiff
…
nekbone
…
neovim
…
netcdf
Update for 'netcdf'. (#5819)
2017-10-25 14:30:58 +02:00
netcdf-cxx
…
netcdf-cxx4
…
netcdf-fortran
…
netgauge
…
netgen
…
netlib-lapack
…
netlib-scalapack
…
nettle
…
nextflow
…
nfft
…
nghttp2
Nghttp2 new package (#5627)
2017-10-06 13:59:56 -06:00
nginx
…
ngmlr
…
ninja
ninja: add v1.8.2 (#5625)
2017-10-10 12:50:56 -07:00
ninja-fortran
…
nmap
…
nnvm
Add a package: dmlc/mxnet. (#3579)
2017-10-10 13:56:26 -07:00
node-js
Fix node-js : requires openssl min 1.0.2 (#5650)
2017-10-08 17:04:09 -06:00
notmuch
…
npb
…
npm
…
npth
…
nspr
…
numactl
…
numdiff
…
nut
…
nwchem
Patches are hashed with specs, and can be associated with dependencies.
2017-09-30 02:06:59 -07:00
ocaml
…
oce
Glibc 2.26 does not provide xlocale.h (#5862)
2017-10-25 10:39:32 +02:00
oclock
…
octave
…
octave-splines
…
octopus
…
of-adios-write
remove wildcards from make spack core and packages
2017-10-24 10:05:36 +02:00
ompss
…
ompt-openmp
…
oniguruma
…
ont-albacore
…
opari2
…
openbabel
…
openblas
remove wildcards from make spack core and packages
2017-10-24 10:05:36 +02:00
opencoarrays
…
opencv
tweak opencv version (#5623)
2017-10-25 14:37:40 +02:00
openexr
…
openfast
Add OpenFAST package (wind turbine simulation tool). (#5662)
2017-10-12 11:42:51 -07:00
openfoam-com
fix bugs found with stricter flake8 rules
2017-10-24 10:05:36 +02:00
openfoam-org
remove wildcards from make spack core and packages
2017-10-24 10:05:36 +02:00
openfst
…
openjpeg
…
openmc
…
openmpi
…
openscenegraph
…
openspeedshop
…
openssh
…
openssl
OpenSSL: Fix Zlib (#5584)
2017-10-04 10:25:11 -06:00
opium
…
opus
…
orfm
…
orthomcl
…
osu-micro-benchmarks
…
otf
…
otf2
…
p4est
…
p7zip
…
pacbio-daligner
…
pacbio-damasker
…
pacbio-dazz-db
…
pacbio-dextractor
…
pagit
…
pagmo
…
paml
…
panda
…
pango
…
papi
…
paradiseo
…
parallel
Parallel fix sbangs (#5910)
2017-10-25 12:15:10 +02:00
parallel-netcdf
…
paraver
…
paraview
Customization of the Paraview module file to its nonstandard directory structure (#5799)
2017-10-26 11:12:04 +02:00
parmetis
…
parmgridgen
…
parsimonator
…
parsplice
…
partitionfinder
…
patch
…
patchelf
…
pathfinder
…
pax-utils
…
pbmpi
…
pcma
…
pcre
…
pcre2
…
pdsh
…
pdt
…
pegtl
…
pennant
…
perl
perl: add old version (#5844)
2017-10-20 16:18:24 -07:00
perl-algorithm-diff
adding perl-bio-perl and dependencies (#5845)
2017-10-25 13:35:17 +02:00
perl-b-hooks-endofscope
adding perl-moose and dependencies (#5912)
2017-10-25 12:07:20 +02:00
perl-bio-perl
adding perl-bio-perl and dependencies (#5845)
2017-10-25 13:35:17 +02:00
perl-capture-tiny
fastq-screen: new package (#5431)
2017-09-28 12:48:31 -06:00
perl-class-data-inheritable
adding perl-bio-perl and dependencies (#5845)
2017-10-25 13:35:17 +02:00
perl-class-load
adding perl-moose and dependencies (#5912)
2017-10-25 12:07:20 +02:00
perl-class-load-xs
adding perl-moose and dependencies (#5912)
2017-10-25 12:07:20 +02:00
perl-cpan-meta-check
adding perl-moose and dependencies (#5912)
2017-10-25 12:07:20 +02:00
perl-data-optlist
adding perl-moose and dependencies (#5912)
2017-10-25 12:07:20 +02:00
perl-data-stag
adding perl-bio-perl and dependencies (#5845)
2017-10-25 13:35:17 +02:00
perl-dbfile
…
perl-dbi
…
perl-devel-cycle
…
perl-devel-globaldestruction
adding perl-moose and dependencies (#5912)
2017-10-25 12:07:20 +02:00
perl-devel-overloadinfo
adding perl-moose and dependencies (#5912)
2017-10-25 12:07:20 +02:00
perl-devel-stacktrace
adding perl-moose and dependencies (#5912)
2017-10-25 12:07:20 +02:00
perl-dist-checkconflicts
adding perl-moose and dependencies (#5912)
2017-10-25 12:07:20 +02:00
perl-eval-closure
adding perl-moose and dependencies (#5912)
2017-10-25 12:07:20 +02:00
perl-exception-class
adding perl-bio-perl and dependencies (#5845)
2017-10-25 13:35:17 +02:00
perl-extutils-makemaker
…
perl-extutils-pkgconfig
fastq-screen: new package (#5431)
2017-09-28 12:48:31 -06:00
perl-file-pushd
adding perl-moose and dependencies (#5912)
2017-10-25 12:07:20 +02:00
perl-font-ttf
…
perl-gd
fastq-screen: new package (#5431)
2017-09-28 12:48:31 -06:00
perl-gd-graph
fastq-screen: new package (#5431)
2017-09-28 12:48:31 -06:00
perl-gd-text
fastq-screen: new package (#5431)
2017-09-28 12:48:31 -06:00
perl-intervaltree
…
perl-io-string
adding perl-bio-perl and dependencies (#5845)
2017-10-25 13:35:17 +02:00
perl-math-cdf
…
perl-module-build
…
perl-module-runtime-conflicts
adding perl-moose and dependencies (#5912)
2017-10-25 12:07:20 +02:00
perl-moose
adding perl-moose and dependencies (#5912)
2017-10-25 12:07:20 +02:00
perl-mro-compat
adding perl-moose and dependencies (#5912)
2017-10-25 12:07:20 +02:00
perl-namespace-clean
adding perl-moose and dependencies (#5912)
2017-10-25 12:07:20 +02:00
perl-package-deprecationmanager
adding perl-moose and dependencies (#5912)
2017-10-25 12:07:20 +02:00
perl-package-stash
adding perl-moose and dependencies (#5912)
2017-10-25 12:07:20 +02:00
perl-package-stash-xs
adding perl-moose and dependencies (#5912)
2017-10-25 12:07:20 +02:00
perl-padwalker
…
perl-params-util
adding perl-moose and dependencies (#5912)
2017-10-25 12:07:20 +02:00
perl-pdf-api2
…
perl-star-fusion
…
perl-sub-exporter
adding perl-moose and dependencies (#5912)
2017-10-25 12:07:20 +02:00
perl-sub-exporter-progressive
adding perl-moose and dependencies (#5912)
2017-10-25 12:07:20 +02:00
perl-sub-identify
adding perl-moose and dependencies (#5912)
2017-10-25 12:07:20 +02:00
perl-sub-install
adding perl-moose and dependencies (#5912)
2017-10-25 12:07:20 +02:00
perl-sub-name
adding perl-moose and dependencies (#5912)
2017-10-25 12:07:20 +02:00
perl-sub-uplevel
…
perl-term-readkey
…
perl-test-cleannamespaces
adding perl-moose and dependencies (#5912)
2017-10-25 12:07:20 +02:00
perl-test-deep
adding perl-bio-perl and dependencies (#5845)
2017-10-25 13:35:17 +02:00
perl-test-differences
adding perl-bio-perl and dependencies (#5845)
2017-10-25 13:35:17 +02:00
perl-test-exception
…
perl-test-fatal
adding perl-moose and dependencies (#5912)
2017-10-25 12:07:20 +02:00
perl-test-memory-cycle
…
perl-test-most
adding perl-bio-perl and dependencies (#5845)
2017-10-25 13:35:17 +02:00
perl-test-needs
adding perl-moose and dependencies (#5912)
2017-10-25 12:07:20 +02:00
perl-test-requires
adding perl-moose and dependencies (#5912)
2017-10-25 12:07:20 +02:00
perl-test-warn
adding perl-bio-perl and dependencies (#5845)
2017-10-25 13:35:17 +02:00
perl-test-warnings
adding perl-moose and dependencies (#5912)
2017-10-25 12:07:20 +02:00
perl-text-diff
adding perl-bio-perl and dependencies (#5845)
2017-10-25 13:35:17 +02:00
perl-uri-escape
…
perl-xml-parser
…
petsc
slepc and petsc version updates (#5863)
2017-10-24 10:57:14 -07:00
pexsi
…
pfft
…
pflotran
…
pgdspider
…
pgi
…
phasta
…
phylip
…
picard
…
pidx
…
pigz
…
piranha
…
pixman
…
pkg-config
…
pkgconf
…
planck-likelihood
…
plasma
Fix bare 'except:' to placate errors in new flake8 version.
2017-10-24 10:05:36 +02:00
plink
…
plumed
plumed: reworked patching applications, added new version (#5680)
2017-10-10 12:35:53 -07:00
pmgr-collective
…
pmix
…
pnfft
…
pngwriter
…
poamsa
…
pocl
remove wildcards from make spack core and packages
2017-10-24 10:05:36 +02:00
polymake
…
porta
…
portage
portage: fixes + added v1.1.* (#5706)
2017-10-16 09:59:41 -07:00
postgresql
…
ppl
…
prank
…
presentproto
…
preseq
…
price
…
primer3
…
printproto
…
probconsrna
…
proj
…
protobuf
…
proxymngr
…
pruners-ninja
…
ps-lite
Add a package: dmlc/mxnet. (#3579)
2017-10-10 13:56:26 -07:00
psi4
…
pstreams
…
pugixml
…
pumi
…
pvm
…
py-3to2
…
py-4suite-xml
…
py-abipy
…
py-alabaster
…
py-apache-libcloud
…
py-apipkg
…
py-appdirs
…
py-appnope
…
py-apscheduler
…
py-argcomplete
…
py-argparse
…
py-ase
…
py-asn1crypto
…
py-astroid
…
py-astropy
…
py-attrs
…
py-autopep8
…
py-babel
…
py-backports-abc
…
py-backports-shutil-get-terminal-size
…
py-backports-ssl-match-hostname
…
py-basemap
…
py-beautifulsoup4
…
py-binwalk
…
py-biom-format
…
py-biopython
…
py-bleach
…
py-blessings
…
py-bokeh
…
py-boltons
…
py-bottleneck
…
py-brian
…
py-brian2
…
py-bsddb3
…
py-cclib
…
py-cdat-lite
…
py-cdo
…
py-certifi
…
py-cffi
…
py-chardet
…
py-click
…
py-colorama
…
py-colormath
…
py-configparser
…
py-counter
…
py-coverage
…
py-cpuinfo
…
py-cryptography
…
py-csvkit
…
py-current
…
py-cutadapt
…
py-cycler
…
py-cython
…
py-dask
…
py-dateutil
…
py-dbf
…
py-decorator
…
py-deeptools
…
py-dev
…
py-dill
…
py-docutils
…
py-doxypy
…
py-doxypypy
…
py-dryscrape
…
py-dxchange
…
py-dxfile
…
py-easybuild-easyblocks
…
py-easybuild-easyconfigs
…
py-easybuild-framework
…
py-edffile
…
py-elasticsearch
…
py-elephant
…
py-emcee
…
py-entrypoints
…
py-enum34
…
py-epydoc
…
py-espresso
py-espresso: initial commit (#5724)
2017-10-13 12:29:30 -07:00
py-espressopp
espressopp -> py-espressopp (#5732)
2017-10-13 12:28:36 -07:00
py-et-xmlfile
…
py-execnet
…
py-fastaindex
…
py-fasteners
…
py-faststructure
…
py-fiscalyear
…
py-flake8
…
py-flask
…
py-flexx
…
py-funcsigs
…
py-functools32
…
py-future
…
py-futures
…
py-genders
…
py-genshi
…
py-git2
…
py-git-review
…
py-gnuplot
…
py-griddataformats
…
py-guidata
…
py-guiqwt
…
py-h5py
…
py-html2text
…
py-html5lib
…
py-httpbin
…
py-hypothesis
…
py-idna
…
py-igraph
…
py-imagesize
…
py-iminuit
…
py-importlib
…
py-ipaddress
…
py-ipdb
…
py-ipykernel
…
py-ipython
…
py-ipython-genutils
…
py-ipywidgets
…
py-itsdangerous
…
py-jdcal
…
py-jedi
…
py-jinja2
…
py-joblib
…
py-jpype
…
py-jsonschema
…
py-junit-xml
…
py-jupyter-client
…
py-jupyter-console
…
py-jupyter-core
…
py-jupyter-notebook
…
py-keras
…
py-latexcodec
…
py-lazy
…
py-lazyarray
…
py-libconf
…
py-line-profiler
…
py-lit
…
py-lmfit
…
py-lockfile
…
py-logilab-common
…
py-lxml
…
py-lzstring
…
py-macholib
…
py-machotools
…
py-macs2
…
py-mako
…
py-mappy
minimap2: new package (#5722)
2017-10-12 10:07:42 -06:00
py-markdown
…
py-markupsafe
…
py-matplotlib
…
py-mccabe
…
py-mdanalysis
…
py-meep
…
py-memory-profiler
…
py-methylcode
…
py-misopy
…
py-mistune
…
py-mock
…
py-mongo
…
py-monotonic
…
py-monty
…
py-mpi4py
py-mpi4py: Add develop version and dependencies (#5798)
2017-10-18 15:56:48 -06:00
py-mpmath
…
py-multiprocess
…
py-multiqc
…
py-mx
…
py-mxnet
Add a package: dmlc/mxnet. (#3579)
2017-10-10 13:56:26 -07:00
py-myhdl
…
py-mysqldb1
…
py-nbconvert
…
py-nbformat
…
py-neo
…
py-nestle
…
py-netcdf4
…
py-netifaces
…
py-networkx
…
py-nose
…
py-nosexcover
…
py-numexpr
…
py-numpy
…
py-numpydoc
…
py-olefile
…
py-ont-fast5-api
…
py-openpyxl
…
py-ordereddict
…
py-oset
…
py-packaging
…
py-palettable
…
py-pandas
…
py-paramiko
…
py-pathlib2
…
py-pathos
…
py-pathspec
…
py-patsy
…
py-pbr
…
py-periodictable
…
py-petsc4py
…
py-pexpect
…
py-phonopy
…
py-pickleshare
…
py-pil
…
py-pillow
…
py-pip
…
py-pipits
…
py-pkgconfig
…
py-ply
…
py-pmw
…
py-pox
…
py-ppft
…
py-prettytable
…
py-proj
…
py-prompt-toolkit
…
py-protobuf
…
py-psutil
…
py-ptyprocess
…
py-pudb
…
py-py
…
py-py2bit
…
py-py2cairo
…
py-py2neo
…
py-py4j
…
py-pyasn1
…
py-pybigwig
…
py-pybind11
…
py-pybtex
…
py-pybtex-docutils
…
py-pychecker
…
py-pycodestyle
…
py-pycparser
…
py-pycrypto
…
py-pycurl
…
py-pydatalog
…
py-pydispatcher
…
py-pydot
…
py-pyelftools
…
py-pyfasta
…
py-pyfftw
…
py-pyflakes
…
py-pygments
…
py-pygobject
…
py-pygtk
…
py-pylint
…
py-pymatgen
…
py-pyminifier
…
py-pympler
…
py-pynn
…
py-pypar
…
py-pyparsing
…
py-pypeflow
…
py-pyprof2html
…
py-pyqt
…
py-pyrad
…
py-pysam
…
py-pyscaf
…
py-pyserial
…
py-pyside
…
py-pysocks
…
py-pytables
…
py-pytest
…
py-pytest-cov
…
py-pytest-flake8
…
py-pytest-httpbin
…
py-pytest-mock
…
py-pytest-runner
…
py-pytest-xdist
…
py-python-daemon
…
py-python-gitlab
…
py-pythonqwt
…
py-pytz
…
py-pywavelets
…
py-pyyaml
…
py-qtawesome
…
py-qtconsole
…
py-qtpy
…
py-quantities
…
py-radical-utils
…
py-ranger
…
py-readme-renderer
…
py-regex
…
py-requests
…
py-restview
…
py-rope
…
py-rpy2
…
py-rsa
…
py-rtree
…
py-saga-python
…
py-scientificpython
…
py-scikit-image
…
py-scikit-learn
…
py-scipy
…
py-seaborn
…
py-setuptools
…
py-sh
…
py-shiboken
…
py-simplegeneric
…
py-simplejson
…
py-singledispatch
…
py-sip
…
py-six
…
py-slepc4py
…
py-sncosmo
…
py-snowballstemmer
…
py-spectra
…
py-spefile
…
py-spglib
…
py-sphinx
…
py-sphinx-bootstrap-theme
…
py-sphinx-rtd-theme
…
py-sphinxcontrib-bibtex
…
py-sphinxcontrib-programoutput
…
py-sphinxcontrib-websupport
…
py-spyder
…
py-spykeutils
…
py-sqlalchemy
…
py-statsmodels
…
py-storm
…
py-subprocess32
…
py-symengine
…
py-symfit
…
py-sympy
…
py-tabulate
…
py-tappy
…
py-terminado
…
py-theano
…
py-tifffile
…
py-tomopy
…
py-tornado
…
py-tqdm
…
py-traitlets
…
py-tuiview
…
py-twisted
…
py-typing
…
py-tzlocal
…
py-unittest2
…
py-unittest2py3k
…
py-urllib3
…
py-urwid
…
py-vcversioner
…
py-virtualenv
…
py-vsc-base
…
py-vsc-install
…
py-wcsaxes
…
py-wcwidth
…
py-webkit-server
…
py-werkzeug
…
py-wheel
…
py-widgetsnbextension
…
py-wrapt
…
py-xarray
…
py-xlrd
…
py-xlsxwriter
py-xlsxwriter: new package (#5918)
2017-10-25 12:19:59 +02:00
py-xmlrunner
…
py-xopen
…
py-xpyb
…
py-xvfbwrapper
…
py-yapf
…
py-yt
…
py-zmq
…
python
Fix bare 'except:' to placate errors in new flake8 version.
2017-10-24 10:05:36 +02:00
qbank
…
qbox
…
qhull
…
qmcpack
qmcpack: new package (#4907)
2017-10-06 13:51:18 -07:00
qmd-progress
…
qrupdate
…
qt
…
qt-creator
added qt creator version 4.4.0 (#5518)
2017-09-27 21:49:33 -06:00
qtgraph
…
qthreads
…
quinoa
…
qwt
…
r
remove wildcards from make spack core and packages
2017-10-24 10:05:36 +02:00
r-a4
bioconductor update (#5786)
2017-10-24 11:19:19 +02:00
r-a4base
bioconductor update (#5786)
2017-10-24 11:19:19 +02:00
r-a4classif
bioconductor update (#5786)
2017-10-24 11:19:19 +02:00
r-a4core
bioconductor update (#5786)
2017-10-24 11:19:19 +02:00
r-a4preproc
bioconductor update (#5786)
2017-10-24 11:19:19 +02:00
r-a4reporting
bioconductor update (#5786)
2017-10-24 11:19:19 +02:00
r-abadata
r-abadata: new package. (#5611)
2017-10-05 08:58:04 -06:00
r-abaenrichment
bioconductor update (#5786)
2017-10-24 11:19:19 +02:00
r-abind
…
r-absseq
bioconductor update (#5786)
2017-10-24 11:19:19 +02:00
r-acde
r-acde: Create new package. (#5616)
2017-10-05 10:21:17 -06:00
r-acepack
r-acepack: Create new package. (#5884)
2017-10-24 11:26:37 +02:00
r-acgh
bioconductor update (#5786)
2017-10-24 11:19:19 +02:00
r-acme
bioconductor update (#5786)
2017-10-24 11:19:19 +02:00
r-ada
…
r-adabag
…
r-ade4
…
r-adegenet
…
r-adsplit
bioconductor update (#5786)
2017-10-24 11:19:19 +02:00
r-affxparser
bioconductor update (#5786)
2017-10-24 11:19:19 +02:00
r-affy
r-affy: added versioned dependency on r (#5660)
2017-10-11 19:49:48 -06:00
r-affycomp
bioconductor update (#5786)
2017-10-24 11:19:19 +02:00
r-affycompatible
bioconductor update (#5786)
2017-10-24 11:19:19 +02:00
r-affycontam
bioconductor update (#5786)
2017-10-24 11:19:19 +02:00
r-affydata
r-affydata: Create new package. (#5665)
2017-10-09 17:05:21 -06:00
r-affyexpress
r-affyexpress: Create new package. (#5807)
2017-10-18 19:07:04 -06:00
r-affyilm
r-affyilm: Create new package. (#5810)
2017-10-18 19:06:16 -06:00
r-affyio
r-affyio: added versioned dependency on r (#5661)
2017-10-11 19:49:28 -06:00
r-affypdnn
r-affypdnn: Create new package. (#5826)
2017-10-24 11:12:47 +02:00
r-affyplm
r-affyplm: Create new package. (#5827)
2017-10-24 11:12:56 +02:00
r-affyqcreport
r-affyqcreport: Create new package. (#5829)
2017-10-24 11:13:44 +02:00
r-affyrnadegradation
r-affyrnadegradation: Create new package. (#5830)
2017-10-24 11:13:53 +02:00
r-agdex
r-agdex: Create new package. (#5983)
2017-10-27 08:16:04 +02:00
r-agilp
r-agilp: Create new package. (#5984)
2017-10-27 08:15:39 +02:00
r-aims
r-aims: Create new package. (#5987)
2017-10-27 08:14:55 +02:00
r-aldex2
r-aldex2: Create new package. (#6015)
2017-10-28 12:10:22 -06:00
r-annaffy
bioconductor update (#5786)
2017-10-24 11:19:19 +02:00
r-annotate
bioconductor update (#5786)
2017-10-24 11:19:19 +02:00
r-annotationdbi
bioconductor update (#5786)
2017-10-24 11:19:19 +02:00
r-annotationfilter
r-annotationfilter: created new package (#5995)
2017-10-27 08:09:31 +02:00
r-annotationforge
r-annotationforge: Create new package. (#5968)
2017-10-27 08:25:12 +02:00
r-annotationhub
r-annotationhub: created new package (#5972)
2017-10-27 08:23:25 +02:00
r-ape
…
r-assertthat
…
r-base64
r-base64: created new package (#5850)
2017-10-24 11:21:48 +02:00
r-base64enc
…
r-beanplot
r-beanplot: created new package (#5825)
2017-10-24 11:12:15 +02:00
r-bh
…
r-biobase
…
r-biocgenerics
r-biocgenerics: added version 0.22.1 and added versioned dependency on r (#5683)
2017-10-11 19:48:19 -06:00
r-biocinstaller
r-biocinstaller: added versioned dependency on r (#5663)
2017-10-11 19:49:08 -06:00
r-biocparallel
r-biocparallel: created new package (#5703)
2017-10-11 19:42:25 -06:00
r-biomart
r-biomart: added versioned dependency on r (#5666)
2017-10-11 19:41:08 -06:00
r-biostrings
r-biostrings: added versioned dependency on r (#5667)
2017-10-13 07:51:30 -06:00
r-bit
…
r-bit64
…
r-bitops
…
r-blob
…
r-boot
r-boot: Update version to 1.3-20 (#5615)
2017-10-05 10:20:45 -06:00
r-brew
…
r-bsgenome
r-bsgenome: created new package (#5928)
2017-10-25 11:16:53 +02:00
r-bumphunter
r-bumphunter: new package (#5824)
2017-10-24 11:09:38 +02:00
r-c50
…
r-car
…
r-caret
…
r-category
r-category: Create new package. (#5959)
2017-10-27 08:34:16 +02:00
r-catools
…
r-checkmate
r-checkmate: Create new package. (#5880)
2017-10-24 11:25:24 +02:00
r-checkpoint
…
r-chron
…
r-class
…
r-cluster
r-cluster: Update version to 2.0.6. (#5618)
2017-10-05 10:21:44 -06:00
r-coda
…
r-codetools
…
r-coin
…
r-colorspace
…
r-corpcor
…
r-corrplot
…
r-crayon
r-crayon: Update version to 1.3.4 (#5854)
2017-10-24 11:23:00 +02:00
r-cubature
…
r-cubist
…
r-curl
r-curl: added list_url and version 3.0 (#5874)
2017-10-24 11:23:54 +02:00
r-data-table
r-data-table: added list_url and version 1.10.4-2 (#5888)
2017-10-24 11:29:42 +02:00
r-dbi
r-dbi: updated to version 0.7 (#5537)
2017-09-28 22:14:56 -06:00
r-delayedarray
r-delayedarray: created new package (#5704)
2017-10-11 19:42:04 -06:00
r-deldir
…
r-dendextend
…
r-deoptim
…
r-deoptimr
…
r-deseq2
r-deseq2: Create new package. (#5981)
2017-10-27 08:16:40 +02:00
r-desolve
r-geiger and dependencies (#5933)
2017-10-25 11:17:37 +02:00
r-devtools
…
r-diagrammer
…
r-dichromat
…
r-digest
…
r-diptest
…
r-domc
…
r-doparallel
r-doparallel: added list_url and version 1.0.11 (#5920)
2017-10-25 11:15:49 +02:00
r-dorng
r-dorng: created new package (#5740)
2017-10-13 07:47:01 -06:00
r-downloader
r-downloader: created new package (#5556)
2017-09-29 16:05:30 -06:00
r-dplyr
r-dplyr: Update version to 0.7.3 (#5531)
2017-09-28 13:09:30 -06:00
r-dt
…
r-dygraphs
…
r-e1071
…
r-edger
r-edger: added versioned dependency on r (#5669)
2017-10-13 18:32:43 -06:00
r-ellipse
…
r-ergm
…
r-evaluate
r-evaluate: Update version to 0.10.1. (#5847)
2017-10-24 11:20:47 +02:00
r-expm
…
r-factoextra
…
r-factominer
…
r-filehash
…
r-flashclust
…
r-flexmix
…
r-foreach
…
r-foreign
…
r-formatr
r-formatr: Update version to 1.5 (#5855)
2017-10-24 11:23:17 +02:00
r-formula
r-formula: Update version to 1.2-2 (#5923)
2017-10-25 11:16:34 +02:00
r-fpc
…
r-futile-logger
r-futile-logger: created new package (#5701)
2017-10-11 19:43:15 -06:00
r-futile-options
r-futile-options: created new package (#5699)
2017-10-11 19:43:53 -06:00
r-gbm
r-gbm: new package. (#5548)
2017-09-29 15:29:11 -06:00
r-gcrma
r-gcrma: added versioned dependency on r (#5670)
2017-10-12 16:18:30 -06:00
r-gdata
r-gdata: Update version to 2.18.0 (#5495)
2017-09-28 18:13:06 -07:00
r-geiger
r-geiger and dependencies (#5933)
2017-10-25 11:17:37 +02:00
r-genefilter
bioconductor update (#5786)
2017-10-24 11:19:19 +02:00
r-geneplotter
r-geneplotter: Create new package. (#5924)
2017-10-25 12:01:19 +02:00
r-genomeinfodb
r-genomeinfodb: created new package (#5695)
2017-10-11 19:47:03 -06:00
r-genomeinfodbdata
r-genomeinfodbdata: added versioned dependency on r (#5685)
2017-10-11 19:48:00 -06:00
r-genomicalignments
r-genomicalignments: created new package (#5785)
2017-10-24 11:30:33 +02:00
r-genomicfeatures
r-genomicfeatures: new package (#5811)
2017-10-18 19:05:53 -06:00
r-genomicranges
r-genomicranges: added new package (#5697)
2017-10-11 19:45:03 -06:00
r-geoquery
r-geoquery: created new package (#5879)
2017-10-24 11:25:02 +02:00
r-geosphere
…
r-ggmap
…
r-ggplot2
…
r-ggpubr
…
r-ggrepel
…
r-ggsci
…
r-ggvis
r-ggvis: Update version to 0.4.3 (#5532)
2017-09-28 13:13:47 -06:00
r-gistr
…
r-git2r
…
r-glmnet
r-glmnet: update version. (#5470)
2017-09-25 16:39:41 -06:00
r-gmodels
…
r-gmp
…
r-go-db
r-annaffy: new package. (#5414)
2017-09-28 12:49:31 -06:00
r-googlevis
…
r-gostats
r-gostats: Create new package. (#5969)
2017-10-27 08:24:49 +02:00
r-gplots
r-gplots: Create New Package. (#5494)
2017-09-27 10:20:17 -06:00
r-graph
r-graph: Create new package. (#5958)
2017-10-27 08:34:33 +02:00
r-gridbase
…
r-gridextra
r-gridextra: Update version to 2.3 (#5915)
2017-10-25 11:50:16 +02:00
r-gseabase
r-gseabase: Create new package. (#5930)
2017-10-25 11:17:00 +02:00
r-gtable
…
r-gtools
…
r-hexbin
…
r-highr
…
r-hmisc
r-hmisc: Create new package. (#5919)
2017-10-25 11:15:40 +02:00
r-hms
r-hms: created new package (#5638)
2017-10-06 20:12:59 -06:00
r-htmltable
r-htmltable: Create new package. (#5882)
2017-10-24 11:25:58 +02:00
r-htmltools
r-htmltools: Update version to 0.3.6 (#5528)
2017-09-28 11:31:16 -06:00
r-htmlwidgets
r-htmlwidgets: Update verion to 0.9 (#5881)
2017-10-24 11:25:42 +02:00
r-httpuv
r-httpuv: Update version to 1.3.5 (#5527)
2017-09-28 11:30:57 -06:00
r-httr
r-httr: added list_url and version 1.3.1 (#5877)
2017-10-24 11:24:29 +02:00
r-hwriter
r-hwriter: new package. (#5549)
2017-09-29 15:29:26 -06:00
r-igraph
…
r-illuminaio
r-illuminaio: created new package (#5849)
2017-10-24 11:21:31 +02:00
r-influencer
…
r-inline
…
r-interactivedisplaybase
r-interactivedisplaybase: created new package (#5967)
2017-10-27 08:26:02 +02:00
r-ipred
…
r-iranges
…
r-irdisplay
…
r-irkernel
…
r-irlba
…
r-iterators
…
r-jpeg
…
r-jsonlite
r-jsonlite: Update version to 1.5 (#5524)
2017-09-28 11:28:49 -06:00
r-kegg-db
r-annaffy: new package. (#5414)
2017-09-28 12:49:31 -06:00
r-kernlab
…
r-kernsmooth
…
r-kknn
…
r-knitr
r-knitr: Update version to 1.17. (#5878)
2017-10-24 11:24:45 +02:00
r-labeling
…
r-lambda-r
r-lambda-r: created new package (#5700)
2017-10-11 19:43:33 -06:00
r-laplacesdemon
…
r-lattice
r-glmnet: update version. (#5470)
2017-09-25 16:39:41 -06:00
r-latticeextra
r-latticeextra: Create new package. (#5883)
2017-10-24 11:26:20 +02:00
r-lava
…
r-lazyeval
…
r-leaflet
…
r-leaps
…
r-learnbayes
…
r-limma
bioconductor update (#5786)
2017-10-24 11:19:19 +02:00
r-lme4
…
r-lmtest
…
r-locfit
r-locfit: created new package (#5572)
2017-10-02 15:54:26 -06:00
r-lpsolve
…
r-lsei
r-lsei: new package (#5926)
2017-10-25 11:16:46 +02:00
r-lubridate
…
r-magic
…
r-magrittr
…
r-mapproj
…
r-maps
…
r-maptools
…
r-markdown
r-markdown: Update version to 0.8. (#5851)
2017-10-24 11:22:05 +02:00
r-mass
r-mass: Update version to 7.3-47 (#5885)
2017-10-24 11:27:04 +02:00
r-matrix
r-glmnet: update version. (#5470)
2017-09-25 16:39:41 -06:00
r-matrixmodels
…
r-matrixstats
r-matrixstats: created new package (#5682)
2017-10-11 19:48:39 -06:00
r-mclust
…
r-mcmcglmm
r-mcmcglmm: new package (#5970)
2017-10-27 08:24:28 +02:00
r-mda
…
r-memoise
…
r-methodss3
r-methodss3: Create new package. (#5960)
2017-10-27 08:32:20 +02:00
r-mgcv
…
r-mime
…
r-minfi
r-minfi: created new package (#5887)
2017-10-24 14:07:45 +02:00
r-minqa
…
r-mlbench
…
r-mlinterfaces
bioconductor update (#5786)
2017-10-24 11:19:19 +02:00
r-modelmetrics
…
r-modeltools
…
r-mpm
…
r-multcomp
…
r-multtest
bioconductor update (#5786)
2017-10-24 11:19:19 +02:00
r-munsell
…
r-mvtnorm
…
r-ncbit
r-geiger and dependencies (#5933)
2017-10-25 11:17:37 +02:00
r-ncdf4
…
r-network
…
r-networkd3
…
r-nlme
r-nlme: added list_url and version 3.1-131 (#5890)
2017-10-24 11:30:49 +02:00
r-nloptr
…
r-nmf
…
r-nnet
…
r-nor1mix
r-nor1mix: created new package (#5828)
2017-10-24 11:13:04 +02:00
r-np
…
r-numderiv
…
r-oligoclasses
r-oligoclasses: Create new package. (#5966)
2017-10-27 08:26:25 +02:00
r-oo
r-oo: Create new package. (#5962)
2017-10-27 08:31:46 +02:00
r-openssl
r-openssl: changed homepage url to the CRAN package homepage, added list_url and added version 0.9.7 (#5848)
2017-10-25 11:12:31 +02:00
r-organismdbi
r-organismdbi: new package (#5997)
2017-10-28 12:11:44 -06:00
r-packrat
…
r-pacman
…
r-pamr
r-pamr: new package (#5514)
2017-09-27 21:48:04 -06:00
r-party
…
r-partykit
…
r-pbdzmq
…
r-pbkrtest
…
r-permute
…
r-pfam-db
r-pfam-db: Create new package. (#5965)
2017-10-27 08:27:19 +02:00
r-pkgconfig
…
r-pkgmaker
…
r-plogr
r-plogr: new package. (#5443)
2017-09-25 16:42:03 -06:00
r-plotrix
…
r-pls
…
r-plyr
…
r-png
…
r-prabclus
…
r-praise
…
r-preprocesscore
r-preprocesscore: added versioned dependency on r (#5671)
2017-10-13 18:50:26 -06:00
r-prodlim
…
r-protgenerics
r-protgenerics: created new package (#5998)
2017-10-27 08:08:16 +02:00
r-proto
…
r-pryr
…
r-quadprog
…
r-quantmod
…
r-quantreg
…
r-quantro
r-quantro: created new package (#5922)
2017-10-25 11:16:20 +02:00
r-r6
r-r6: Update version to 2.2.2 (#5529)
2017-09-28 12:46:11 -06:00
r-randomforest
…
r-raster
…
r-rbgl
r-rbgl: Create new package. (#5931)
2017-10-25 11:17:29 +02:00
r-rbokeh
…
r-rcolorbrewer
…
r-rcpp
r-rcpp: Update version to 0.12.13 (#5526)
2017-09-28 11:30:25 -06:00
r-rcpparmadillo
r-rcpparmadillo: Create new package. (#5875)
2017-10-24 11:24:16 +02:00
r-rcppeigen
…
r-rcurl
r-rcurl: created new package (#5492)
2017-09-26 17:49:54 -06:00
r-rda
r-rda: new package. (#5523)
2017-09-28 11:28:29 -06:00
r-readr
r-readr: created new package (#5741)
2017-10-13 07:47:43 -06:00
r-registry
…
r-repr
…
r-reshape
r-reshape: created new package (#5889)
2017-10-24 11:29:56 +02:00
r-reshape2
…
r-rgl
…
r-rgooglemaps
…
r-rinside
…
r-rjava
…
r-rjson
…
r-rjsonio
…
r-rlang
r-adsplit: Create new package and update version for its dependencies. (#5640)
2017-10-09 17:10:29 -06:00
r-rmarkdown
…
r-rminer
…
r-rmpfr
…
r-rmpi
r-rmpi: added list_url and updated md5 (#5698)
2017-10-13 18:35:06 -06:00
r-rmysql
…
r-rngtools
…
r-robustbase
…
r-rocr
r-rocr: new package. (#5513)
2017-09-27 21:47:47 -06:00
r-rodbc
…
r-roxygen2
…
r-rpart
…
r-rpart-plot
…
r-rpostgresql
…
r-rsamtools
r-rsamtools: created new package (#5702)
2017-10-11 19:42:55 -06:00
r-rsnns
…
r-rsqlite
…
r-rstan
…
r-rstudioapi
…
r-rtracklayer
r-rtracklayer: new package (#5808)
2017-10-18 19:06:36 -06:00
r-rzmq
…
r-s4vectors
r-s4vectors: added versioned dependency on r (#5672)
2017-10-13 18:32:17 -06:00
r-sandwich
…
r-scales
r-scales: Update url. (#5921)
2017-10-25 11:16:00 +02:00
r-scatterplot3d
…
r-segmented
…
r-seqinr
…
r-sfsmisc
r-sfsmisc: new package. (#5516)
2017-09-27 22:16:02 -06:00
r-shiny
r-shiny: update version to 1.0.5 (#5530)
2017-09-28 11:31:27 -06:00
r-siggenes
r-siggenes: new package (#5831)
2017-10-24 11:14:04 +02:00
r-simpleaffy
r-simpleaffy: added versioned dependency on r (#5673)
2017-10-12 16:18:15 -06:00
r-snow
…
r-sourcetools
r-sourcetools: Create new package. (#5853)
2017-10-24 11:22:42 +02:00
r-sp
…
r-sparsem
…
r-spdep
…
r-stanheaders
…
r-statnet-common
…
r-stringi
r-stringi: added list_url and version 1.1.5 and 1.1.3 (#5737)
2017-10-13 07:45:26 -06:00
r-stringr
r-stringr: added list_url and version 1.2.0 (#5738)
2017-10-13 07:46:29 -06:00
r-strucchange
…
r-subplex
r-geiger and dependencies (#5933)
2017-10-25 11:17:37 +02:00
r-summarizedexperiment
r-summarizedexperiment: created new package (#5734)
2017-10-13 07:45:05 -06:00
r-survey
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r-survival
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r-tarifx
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r-tensora
r-mcmcglmm: new package (#5970)
2017-10-27 08:24:28 +02:00
r-testit
r-testit: Update version to 0.7 (#5852)
2017-10-24 11:22:23 +02:00
r-testthat
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r-th-data
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r-threejs
r-threejs: Correct url. (#5553)
2017-09-29 15:33:05 -06:00
r-tibble
r-tibble: added dependency r-rlang (#5536)
2017-10-04 09:59:40 -07:00
r-tidyr
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r-trimcluster
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r-trust
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r-ttr
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r-utils
r-utils: Create new package. (#5964)
2017-10-27 08:31:26 +02:00
r-uuid
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r-variantannotation
r-variantannotation: created new package (#5932)
2017-10-25 11:17:15 +02:00
r-varselrf
r-varselrf: new package. (#5515)
2017-09-27 21:48:22 -06:00
r-vcd
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r-vegan
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r-viridis
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r-viridislite
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r-visnetwork
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r-whisker
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r-withr
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r-xgboost
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r-xlconnect
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r-xlconnectjars
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r-xlsx
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r-xlsxjars
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r-xml
r-xml: updated url and added version 3.98-1.9 (#5466)
2017-09-25 16:46:01 -06:00
r-xtable
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r-xts
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r-xvector
r-xvector: added versioned dependency on r (#5731)
2017-10-13 16:01:18 -06:00
r-yaml
r-yaml: Update version to 2.1.14 (#5856)
2017-10-24 11:23:38 +02:00
r-yaqcaffy
r-yaqcaffy: added list_url and versioned dependency on r (#5730)
2017-10-13 07:44:26 -06:00
r-yarn
r-yarn: created new package (#5925)
2017-10-25 11:16:41 +02:00
r-zlibbioc
r-zlibbioc: added versioned dependency on r (#5674)
2017-10-13 07:50:10 -06:00
r-zoo
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raft
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raja
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randfold
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random123
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randrproto
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ravel
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raxml
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ray
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rdp-classifier
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readline
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recordproto
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redundans
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relion
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rempi
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rename
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rendercheck
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renderproto
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resourceproto
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revbayes
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rgb
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rhash
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rockstar
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root
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rose
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rr
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rsbench
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rsem
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rstart
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rsync
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rtags
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rtax
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ruby
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rust
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rust-bindgen
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sabre
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salmon
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sambamba
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samrai
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samtools
samtools: add version 1.6 + some fixes (#5715)
2017-10-12 10:08:31 -06:00
sandbox
Add the Sandbox package (#5595)
2017-10-04 18:40:03 -07:00
sas
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satsuma2
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savanna
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saws
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sbt
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scala
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scalasca
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scalpel
Add package for scalpel@0.5.3 (#5901)
2017-10-25 13:48:11 +02:00
scons
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scorec-core
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scorep
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scotch
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scr
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screen
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scripts
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scrnsaverproto
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sctk
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sdl2
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sdl2-image
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sed
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seqprep
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seqtk
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serf
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sessreg
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setxkbmap
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sga
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shapeit
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shared-mime-info
Missing perl dependencies (#5204)
2017-09-26 07:27:28 -06:00
shiny-server
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shortstack
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showfont
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sickle
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signalp
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silo
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simplemoc
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simul
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simulationio
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singularity
singularity 2.4 added (#5782)
2017-10-17 01:28:19 -07:00
slepc
slepc and petsc version updates (#5863)
2017-10-24 10:57:14 -07:00
slurm
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smalt
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smc
add newlines at end of some package files
2017-10-24 10:05:36 +02:00
smproxy
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snakemake
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snap
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snap-berkeley
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snap-korf
snap-korf: new package (#5589)
2017-10-10 11:09:31 -07:00
snappy
snappy: Build shared library by default (#5534)
2017-09-28 14:18:50 -06:00
snbone
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sniffles
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snptest
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soap2
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soapindel
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soapsnp
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somatic-sniper
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sortmerna
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sowing
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sox
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spades
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spark
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sparsehash
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sparta
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spdlog
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spectrum-mpi
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speex
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sph2pipe
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spherepack
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spindle
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spot
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sqlite
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squid
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sra-toolkit
sra-toolkit: new package (#5588)
2017-10-03 14:41:41 -06:00
sspace-longread
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sspace-standard
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sst-dumpi
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sst-macro
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stacks
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staden-io-lib
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star
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star-ccm-plus
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stat
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stc
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stream
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strelka
Strelka depends on boost 1.56.0 *or newer* (#5690)
2017-10-11 17:21:26 -06:00
stress
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stringtie
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structure
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sublime-text
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subread
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subversion
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suite-sparse
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sumaclust
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sundials
Update Sundials package (#5696)
2017-10-13 21:13:10 -06:00
superlu
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superlu-dist
superlu_dist: update to latest version 5.2.1 (#5762)
2017-10-13 21:22:44 -06:00
superlu-mt
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sw4lite
sw4lite: fix build errors and add variants (#5944)
2017-10-26 09:18:05 -06:00
swarm
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swfft
SWFFT: initial commit (#5953)
2017-10-27 07:20:29 -06:00
swiftsim
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swig
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symengine
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sympol
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sz
SZ: add version 1.4.11 (#5517)
2017-09-27 16:30:43 -07:00
tabix
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talloc
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tar
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targetp
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task
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taskd
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tassel
tassel: new package (#5583)
2017-10-04 10:28:28 -06:00
tau
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tcl
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tcoffee
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tcsh
Patches are hashed with specs, and can be associated with dependencies.
2017-09-30 02:06:59 -07:00
tealeaf
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tetgen
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tethex
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texinfo
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texlive
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the-platinum-searcher
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the-silver-searcher
The silver searcher: new version (#5630)
2017-10-06 13:56:58 -06:00
thrift
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thrust
Add a package: thrust. (#3729)
2017-10-24 11:39:38 +02:00
tig
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tinyxml
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tinyxml2
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tk
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tmalign
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tmhmm
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tmux
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tmuxinator
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tophat
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tppred
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transabyss
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transdecoder
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transposome
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transset
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trapproto
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tree
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triangle
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trilinos
flake8: fix warnings (#5759)
2017-10-13 15:16:58 -06:00
trimgalore
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trimmomatic
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turbine
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turbomole
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tut
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twm
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tycho2
tycho2: initial commit (#5196)
2017-09-28 14:48:54 -07:00
uberftp
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udunits2
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uncrustify
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unibilium
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unison
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units
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unixodbc
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usearch
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util-linux
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util-macros
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uuid
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valgrind
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vampirtrace
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vardictjava
Add a package for VarDictJava@1.5.1 (#5626)
2017-10-06 13:58:34 -06:00
varscan
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vc
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vcftools
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vcsh
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vdt
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vecgeom
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veclibfort
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vegas2
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velvet
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videoproto
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viennarna
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viewres
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vim
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virtualgl
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visit
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vizglow
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vmatch
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voropp
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votca-csg
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votca-ctp
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votca-moo
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votca-tools
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votca-xtp
votca-xtp: added url (#5772)
2017-10-17 01:39:02 -07:00
vpfft
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vpic
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vsearch
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vtk
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wannier90
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wget
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windowswmproto
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wt
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wx
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wxpropgrid
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x11perf
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xapian-core
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xauth
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xbacklight
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xbiff
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xbitmaps
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xcalc
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xcb-demo
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xcb-proto
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xcb-util
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xcb-util-cursor
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xcb-util-errors
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xcb-util-image
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xcb-util-keysyms
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xcb-util-renderutil
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xcb-util-wm
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xclipboard
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xclock
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xcmiscproto
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xcmsdb
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xcompmgr
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xconsole
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xcursor-themes
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xcursorgen
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xdbedizzy
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xditview
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xdm
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xdpyinfo
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xdriinfo
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xedit
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xerces-c
xerces-c: Fix url (#5597)
2017-10-04 10:25:31 -06:00
xev
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xextproto
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xeyes
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xf86bigfontproto
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xf86dga
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xf86dgaproto
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xf86driproto
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xf86miscproto
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xf86rushproto
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xf86vidmodeproto
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xfd
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xfindproxy
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xfontsel
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xfs
…
xfsinfo
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xfwp
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xgamma
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xgc
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xhost
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xineramaproto
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xinit
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xinput
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xkbcomp
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xkbdata
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xkbevd
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xkbprint
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xkbutils
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xkeyboard-config
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xkill
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xload
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xlogo
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xlsatoms
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xlsclients
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xlsfonts
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xmag
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xman
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xmessage
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xmh
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xmlto
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xmodmap
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xmore
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xorg-cf-files
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xorg-docs
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xorg-gtest
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xorg-server
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xorg-sgml-doctools
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xphelloworld
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xplor-nih
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xplsprinters
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xpr
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xprehashprinterlist
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xprop
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xproto
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xproxymanagementprotocol
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xqilla
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xrandr
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xrdb
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xrefresh
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xrootd
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xrx
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xsbench
xsbench: add v14 (#5835)
2017-10-20 08:52:17 +02:00
xscope
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xsdk
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xsdktrilinos
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xset
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xsetmode
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xsetpointer
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xsetroot
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xsm
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xstdcmap
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xterm
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xtrans
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xtrap
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xts
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xvidtune
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xvinfo
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xwd
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xwininfo
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xwud
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xz
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yajl
Added Spackage for YAJL (#5566)
2017-10-02 12:50:55 -06:00
yaml-cpp
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yasm
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yorick
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z3
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zeromq
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zfp
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zip
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zlib
Zlib gets a 50-60% performance win when compiled with -O2 (#5838)
2017-10-25 13:53:35 +02:00
zoltan
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zsh
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zstd
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