360dc4a709
* added albacore package as well as dependency py-ont-fast5-api * added py-cutadapt and dependency py-xopen * made more changes to albacore and cutadapt as well as dependencies * made changes again per @adamjstewart * fixed by python n00b errors i think * fixed? * tw=79 * made changes to py-ont-fast5-api ont-albacore * removed bad characters
41 lines
1.8 KiB
Python
41 lines
1.8 KiB
Python
##############################################################################
|
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
|
# Produced at the Lawrence Livermore National Laboratory.
|
|
#
|
|
# This file is part of Spack.
|
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
|
# LLNL-CODE-647188
|
|
#
|
|
# For details, see https://github.com/llnl/spack
|
|
# Please also see the LICENSE file for our notice and the LGPL.
|
|
#
|
|
# This program is free software; you can redistribute it and/or modify
|
|
# it under the terms of the GNU Lesser General Public License (as
|
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
|
#
|
|
# This program is distributed in the hope that it will be useful, but
|
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
|
# conditions of the GNU Lesser General Public License for more details.
|
|
#
|
|
# You should have received a copy of the GNU Lesser General Public
|
|
# License along with this program; if not, write to the Free Software
|
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
|
##############################################################################
|
|
from spack import *
|
|
|
|
|
|
class PyCutadapt(PythonPackage):
|
|
"""Cutadapt finds and removes adapter sequences, primers, poly-A tails and
|
|
other types of unwanted sequence from your high-throughput sequencing
|
|
reads."""
|
|
|
|
homepage = "https://cutadapt.readthedocs.io"
|
|
url = "https://pypi.io/packages/source/c/cutadapt/cutadapt-1.13.tar.gz"
|
|
|
|
version('1.13', '2d2d14e0c20ad53d7d84b57bc3e63b4c')
|
|
|
|
depends_on('python@2.6:', type=('build', 'run'))
|
|
depends_on('py-setuptools', type=('build'))
|
|
depends_on('py-xopen@0.1.1:', type=('build', 'run'))
|