a8ccb8e116
- [x] add `concretize.lp`, `spack.yaml`, etc. to licensed files
- [x] update all licensed files to say 2013-2021 using
`spack license update-copyright-year`
- [x] appease mypy with some additions to package.py that needed
for oneapi.py
31 lines
1012 B
Python
31 lines
1012 B
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
|
|
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
#
|
|
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
|
|
from spack import *
|
|
|
|
|
|
class Orthomcl(Package):
|
|
"""OrthoMCL is a genome-scale algorithm for grouping orthologous protein
|
|
sequences."""
|
|
|
|
homepage = "http://orthomcl.org/orthomcl/"
|
|
url = "http://orthomcl.org/common/downloads/software/v2.0/orthomclSoftware-v2.0.9.tar.gz"
|
|
|
|
version('2.0.9', sha256='5f96d23ff255778535c4926d75b19f059db0c01be1ac599289d2431115d68640')
|
|
|
|
depends_on('perl', type=('build', 'run'))
|
|
depends_on('blast-plus')
|
|
depends_on('mcl')
|
|
depends_on('mariadb')
|
|
|
|
def install(self, spec, prefix):
|
|
install_tree('bin', prefix.bin)
|
|
install_tree('config', prefix.config)
|
|
install_tree('doc', prefix.doc)
|
|
install_tree('lib', prefix.lib)
|
|
|
|
def setup_run_environment(self, env):
|
|
env.prepend_path('PERL5LIB', self.prefix.lib)
|