46ae3f0570
This PR adds the r-fdb-infiniummethylation-hg18 package and the needed dependency of r-txdb-hsapiens-ucsc-hg18-knowngene.
21 lines
914 B
Python
21 lines
914 B
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RTxdbHsapiensUcscHg18Knowngene(RPackage):
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"""Exposes an annotation databases generated from UCSC by exposing these as
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TxDb objects"""
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# This is a bioconductor package but ther is no available git repo
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homepage = "http://bioconductor.org/packages/release/data/annotation/html/TxDb.Hsapiens.UCSC.hg18.knownGene.html"
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url = "http://bioconductor.org/packages/release/data/annotation/src/contrib/TxDb.Hsapiens.UCSC.hg18.knownGene_3.2.2.tar.gz"
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version('3.2.2', sha256='bc9ca40b4eab87f5ca64a4b876d42502b9b8e9f5983d745bfe0ee349d97b69fa')
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depends_on('r-genomicfeatures@1.21.30:', type=('build', 'run'))
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depends_on('r-annotationdbi', type=('build', 'run'))
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