35 lines
1.5 KiB
Python
35 lines
1.5 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RGosemsim(RPackage):
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"""GO-terms Semantic Similarity Measures.
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The semantic comparisons of Gene Ontology (GO) annotations provide
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quantitative ways to compute similarities between genes and gene groups,
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and have became important basis for many bioinformatics analysis
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approaches. GOSemSim is an R package for semantic similarity computation
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among GO terms, sets of GO terms, gene products and gene clusters.
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GOSemSim implemented five methods proposed by Resnik, Schlicker, Jiang,
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Lin and Wang respectively."""
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homepage = "https://bioconductor.org/packages/GOSemSim"
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git = "https://git.bioconductor.org/packages/GOSemSim.git"
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version('2.10.0', commit='5db1ecbf2f8d870430d6e587609327d05ba3ad7b')
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version('2.8.0', commit='c8c985b2a814cc2365c7f05b2509205e1b6b7f58')
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version('2.6.2', commit='2ffe78e89276e804306554965fc0799318ec56ed')
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version('2.4.1', commit='0656e845860d14e054670ffc246a1c53f699299c')
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version('2.2.0', commit='247434790e6c8cf99e5643f569390362b8c87c52')
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depends_on('r@3.3.2:', type=('build', 'run'))
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depends_on('r-annotationdbi', type=('build', 'run'))
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depends_on('r-go-db', type=('build', 'run'))
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depends_on('r-rcpp', type=('build', 'run'))
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depends_on('r@3.4.0:', when='@2.8.0:', type=('build', 'run'))
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