39 lines
1.8 KiB
Python
39 lines
1.8 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RYarn(RPackage):
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"""YARN: Robust Multi-Condition RNA-Seq Preprocessing and Normalization.
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Expedite large RNA-Seq analyses using a combination of previously
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developed tools. YARN is meant to make it easier for the user in
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performing basic mis-annotation quality control, filtering, and
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condition-aware normalization. YARN leverages many Bioconductor tools
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and statistical techniques to account for the large heterogeneity and
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sparsity found in very large RNA-seq experiments."""
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homepage = "https://bioconductor.org/packages/yarn"
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git = "https://git.bioconductor.org/packages/yarn.git"
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version('1.10.0', commit='36ffe84148eb871e93bc8f9e697475319b5ea472')
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version('1.8.1', commit='ee0723d4dbf082b4469ca9c22cce4f1a2ac81c04')
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version('1.6.0', commit='19d1b2ef275f294bd318b86e0d237c271880117d')
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version('1.4.0', commit='36100f40b9e520c072d0d5ebf963723b813f7db0')
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version('1.2.0', commit='28af616ef8c27dcadf6568e276dea8465486a697')
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depends_on('r-biobase', type=('build', 'run'))
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depends_on('r-biomart', type=('build', 'run'))
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depends_on('r-downloader', type=('build', 'run'))
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depends_on('r-edger', type=('build', 'run'))
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depends_on('r-gplots', type=('build', 'run'))
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depends_on('r-limma', type=('build', 'run'))
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depends_on('r-matrixstats', type=('build', 'run'))
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depends_on('r-preprocesscore', type=('build', 'run'))
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depends_on('r-readr', type=('build', 'run'))
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depends_on('r-rcolorbrewer', type=('build', 'run'))
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depends_on('r-quantro', type=('build', 'run'))
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