32 lines
1.2 KiB
Python
32 lines
1.2 KiB
Python
# Copyright Spack Project Developers. See COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class RBsgenomeHsapiensUcscHg19(RPackage):
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"""Full genome sequences for Homo sapiens (UCSC version hg19, based on
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GRCh37.p13).
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Full genome sequences for Homo sapiens (Human) as provided by UCSC
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(hg19, Feb. 2009) and stored in Biostrings objects."""
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# This is a bioconductor package but there is no available git repo.
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bioc = "BSgenome.Hsapiens.UCSC.hg19"
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url = "http://www.bioconductor.org/packages/release/data/annotation/src/contrib/BSgenome.Hsapiens.UCSC.hg19_1.4.0.tar.gz"
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version(
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"1.4.3",
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url="https://bioconductor.org/packages/3.12/data/annotation/src/contrib/BSgenome.Hsapiens.UCSC.hg19_1.4.3.tar.gz",
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sha256="5bfa65d7836449d9b30c356968497cdfaa98be48c4e329e71e8f8a120f3e9d1a",
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)
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version(
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"1.4.0",
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url="https://bioconductor.org/packages/3.10/data/annotation/src/contrib/BSgenome.Hsapiens.UCSC.hg19_1.4.0.tar.gz",
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sha256="88f515e5c27dd11d10654250e3a0a9389e4dfeb0b1c2d43419aa7086e6c516f8",
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)
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depends_on("r-bsgenome@1.33.5:", type=("build", "run"))
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depends_on("r-bsgenome@1.54.0:", type=("build", "run"), when="@1.4.3:")
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