25 lines
954 B
Python
25 lines
954 B
Python
# Copyright Spack Project Developers. See COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Shapeit(Package):
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"""SHAPEIT is a fast and accurate method for estimation of haplotypes (aka
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phasing) from genotype or sequencing data."""
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homepage = "https://mathgen.stats.ox.ac.uk/genetics_software/shapeit/shapeit.html"
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url = "https://mathgen.stats.ox.ac.uk/genetics_software/shapeit/shapeit.v2.r837.GLIBCv2.12.Linux.dynamic.tgz"
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version("2.837", sha256="ec2ce728dd754452423ff5a8f7ed39c1c1218a11cedb93fab0c18428e3211874")
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def url_for_version(self, version):
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url = "https://mathgen.stats.ox.ac.uk/genetics_software/shapeit/shapeit.v{0}.r{1}.GLIBCv2.12.Linux.dynamic.tgz"
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return url.format(version[0], version[1])
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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with working_dir("bin"):
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install("shapeit", prefix.bin)
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