29 lines
1.3 KiB
Python
29 lines
1.3 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RGdsfmt(RPackage):
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"""This package provides a high-level R interface to CoreArray Genomic
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Data Structure (GDS) data files, which are portable across platforms
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with hierarchical structure to store multiple scalable array-oriented
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data sets with metadata information. It is suited for large-scale
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datasets, especially for data which are much larger than the available
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random-access memory. The gdsfmt package offers the efficient
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operations specifically designed for integers of less than 8 bits,
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since a diploid genotype, like single-nucleotide polymorphism (SNP),
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usually occupies fewer bits than a byte. Data compression and
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decompression are available with relatively efficient random access.
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It is also allowed to read a GDS file in parallel with multiple R
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processes supported by the package parallel."""
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homepage = "http://bioconductor.org/packages/gdsfmt/"
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git = "https://git.bioconductor.org/packages/gdsfmt.git"
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version('1.14.1', commit='15743647b7eea5b82d3284858b4591fb6e59959d')
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depends_on('r@3.4.0:3.4.9', when='@1.14.1')
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