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abinit
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abyss
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accfft
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ack
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activeharmony
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adept-utils
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adios
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adios2
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adlbx
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adol-c
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aegean
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aida
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New package: AIDA (#9094)
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2018-09-03 21:02:06 -05:00 |
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albany
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albert
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alglib
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allinea-forge
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allinea-reports
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allpaths-lg
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alquimia
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alsa-lib
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amg
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AMG: update version (#9228)
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2018-09-12 14:11:05 -06:00 |
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amg2013
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amp
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ampliconnoise
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amrex
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amrvis
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Updating amrvis to allow building with profiling support. (#9204)
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2018-09-14 17:16:35 -07:00 |
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andi
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angsd
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ant
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antlr
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ants
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ape
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aperture-photometry
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aperture-photometry: new package (#9119)
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2018-09-03 20:52:11 -05:00 |
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apex
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apple-libunwind
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apple-libunwind: update path to library (#9265)
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2018-09-18 18:48:53 -07:00 |
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applewmproto
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appres
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apr
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apr-util
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aragorn
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archer
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argobots
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argobots: new package starting at 1.0b1 (#9238)
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2018-09-14 15:48:40 -07:00 |
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argp-standalone
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argtable
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arlecore
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armadillo
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arpack-ng
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arpack-ng: add version 3.6.3 (#9331)
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2018-09-26 19:12:41 -07:00 |
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arrow
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ascent
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asciidoc
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aspa
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aspcud
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aspect
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aspect: new version (#9146)
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2018-09-03 20:35:45 -05:00 |
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aspell
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aspell6-de
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aspell6-en
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aspell6-es
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aspera-cli
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assimp
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assimp: fix compile issues with intel compilers on knl/linux [a depen… (#9191)
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2018-09-08 16:18:37 -05:00 |
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astra
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astral
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astyle
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at-spi2-atk
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at-spi2-core
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atk
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atk package: hotfix #9099 (#9102)
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2018-08-28 16:35:30 -04:00 |
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atlas
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atom-dft
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atompaw
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atop
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augustus
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autoconf
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autodock-vina
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autogen
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automaded
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automake
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axel
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axl
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bamdst
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Bamdst: a new package. (#9113)
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2018-09-04 14:35:33 -05:00 |
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bamtools
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bamutil
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barrnap
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bash
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bash-completion
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bats
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bazel
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bbcp
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bbmap
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bc
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bcftools
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bcl2fastq2
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bdftopcf
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bdw-gc
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bear
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beast1
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beast2
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bedops
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bedtools2
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beforelight
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benchmark
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berkeley-db
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bertini
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bib2xhtml
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bigreqsproto
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binutils
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binutils: add variant 'nls' for native language support (#9124)
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2018-08-29 20:32:41 -07:00 |
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bioawk
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biopieces
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bismark
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bison
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bitmap
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blasr
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blasr-libcpp
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blast-plus
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blat
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blaze
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blis
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bliss
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blitz
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bmake
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bml
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bohrium
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bolt
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bolt: new package starting at 1.0b1 (#9253)
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2018-09-14 15:49:36 -07:00 |
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bookleaf-cpp
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boost
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boostmplcartesianproduct
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bowtie
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bowtie2
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boxlib
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bpp-core
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bpp-phyl
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bpp-seq
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bpp-suite
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bracken
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braker
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braker: add new version 2.1.0 (#8946)
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2018-08-26 19:44:53 -05:00 |
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branson
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breakdancer
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breakdancer: fix several issues (#9251)
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2018-09-14 20:11:34 -07:00 |
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breseq
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brigand
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bsseeker2
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bucky
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bumpversion
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busco
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butter
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bwa
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bwtool
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byobu
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bzip2
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c-blosc
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c-lime
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caffe
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cairo
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cairomm
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caliper
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callpath
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camellia
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candle-benchmarks
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Packages/candle benchmarks (#9266)
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2018-09-18 13:02:03 -06:00 |
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cantera
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canu
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cap3
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cares
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cask
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casper
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catalyst
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catch
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Catch2: 2.3.0+ (#9300)
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2018-09-20 15:55:18 +02:00 |
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cbench
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cblas
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cbtf
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Update openspeedshop and cbtf version numbers (#9150)
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2018-09-03 20:35:25 -05:00 |
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cbtf-argonavis
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Update openspeedshop and cbtf version numbers (#9150)
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2018-09-03 20:35:25 -05:00 |
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cbtf-argonavis-gui
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cbtf-krell
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Update openspeedshop and cbtf version numbers (#9150)
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2018-09-03 20:35:25 -05:00 |
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cbtf-lanl
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Update openspeedshop and cbtf version numbers (#9150)
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2018-09-03 20:35:25 -05:00 |
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ccache
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cctools
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cdbfasta
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cdd
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cddlib
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cdhit
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cdo
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ceed
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cereal
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ceres-solver
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cfitsio
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cgal
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cgm
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cgns
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channelflow
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New package: channelflow (#9111)
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2018-08-29 10:54:34 +02:00 |
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charliecloud
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charmpp
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Charmpp: rename charm to charmpp according to ++ conventions (#9216)
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2018-09-14 17:01:07 -07:00 |
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chatterbug
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check
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chlorop
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chombo
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cistem
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Fix version parsing for cistem package (#9260)
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2018-09-18 19:29:18 -07:00 |
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cityhash
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clamr
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clapack
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cleaveland4
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cleverleaf
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clfft
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clhep
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clingo
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cloc
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cloog
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cloverleaf
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cloverleaf3d
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clustalo
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clustalw
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cmake
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cmake: add version 3.12.2 (#9248)
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2018-09-14 09:36:39 -07:00 |
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cmocka
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cmor
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cnmem
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cnpy
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cntk
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cntk1bitsgd
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codar-cheetah
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codes
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New package: CODES simulation framework (#9133)
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2018-09-03 20:43:50 -05:00 |
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coevp
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cohmm
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coinhsl
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coinhsl: add @2015.06.23, explain versions, SHA256 (#9258)
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2018-09-16 15:03:26 -05:00 |
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colm
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colordiff
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comd
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ecp-proxy-apps: update dependencies for release 1.0 and 1.1 (#9217)
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2018-09-11 15:10:49 -06:00 |
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commons-lang
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Add MDB driver support to GDAL (#8614)
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2018-08-29 12:35:56 -05:00 |
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commons-lang3
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Add MDB driver support to GDAL (#8614)
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2018-08-29 12:35:56 -05:00 |
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commons-logging
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Add MDB driver support to GDAL (#8614)
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2018-08-29 12:35:56 -05:00 |
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compiz
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compositeproto
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conduit
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constype
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converge
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coreutils
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corset
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cosmomc
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cosp2
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cp2k
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cppad
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cppcheck
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cppgsl
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new package: GSL - C++ Guideline Support Library (#9091)
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2018-08-24 17:45:18 -04:00 |
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cpprestsdk
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cppunit
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cppzmq
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cpu-features
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cpuinfo
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cram
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cryptopp
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cscope
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csdp
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ctffind
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cub
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cube
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cubelib
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cubew
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cuda
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Added Cuda 10 (#9310)
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2018-09-27 13:33:53 -07:00 |
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cuda-memtest
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cudnn
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cufflinks
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cups
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curl
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cvs
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czmq
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dakota
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daligner
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damageproto
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damselfly
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darshan-runtime
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darshan-util
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dash
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datamash
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dataspaces
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davix
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dbus
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dealii
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xsdk: add dealii (#7529)
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2018-09-06 19:22:17 -05:00 |
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dealii-parameter-gui
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deconseq-standalone
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dejagnu
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delly2
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denovogear
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dia
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dialign-tx
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diamond
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diffsplice
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direnv
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discovar
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discovardenovo
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dislin
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dlpack
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dmd
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Pack dlang's stdlib into dmd. (#9131)
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2018-09-04 14:49:28 -05:00 |
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dmlc-core
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dmtcp
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dmxproto
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docbook-xml
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docbook-xsl
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dos2unix
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dotnet-core-sdk
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changed to new install_tree formalism (#9181)
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2018-09-15 09:40:50 -05:00 |
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double-conversion
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doxygen
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dri2proto
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dri3proto
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dsdp
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dsrc
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dtcmp
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dyninst
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dyninst: add dependency on libiberty (#8806)
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2018-08-27 14:34:05 -07:00 |
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ea-utils
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easybuild
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ebms
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eccodes
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eclipse-gcj-parser
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ecp-proxy-apps
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Packages/candle benchmarks (#9266)
|
2018-09-18 13:02:03 -06:00 |
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ed
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editres
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eigen
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add eigen@3.3.5 (#9212)
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2018-09-14 17:14:46 -07:00 |
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elasticsearch
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Added Kibana package, added Elasticsearch to 6.4.0 (#9239)
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2018-09-14 10:50:20 -07:00 |
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elemental
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elfutils
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elk
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elpa
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emacs
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ember
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ember: put all READMEs into docs and add executables in bin (#9362)
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2018-09-27 05:49:15 -06:00 |
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emboss
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encodings
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environment-modules
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eospac
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er
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es
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esmf
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essl
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ethminer
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etsf-io
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everytrace
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everytrace-example
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evieext
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exabayes
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examinimd
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exampm
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exasp2
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exmcutils
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exodusii
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exonerate
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expat
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expect
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express
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extrae
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exuberant-ctags
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f90cache
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fabtests
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falcon
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farmhash
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fast-gbs
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fast-global-file-status
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fasta
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fastjar
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fastmath
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fastme
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fastphase
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fastq-screen
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fastqc
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fastqvalidator
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fasttree
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fastx-toolkit
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fenics
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fermi
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fermikit
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fermisciencetools
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ferret
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ffmpeg
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fftw
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fimpute
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findutils
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fio
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fish
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fixesproto
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flac
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flang
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flann
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patch flann // gcc // cmake@3.11+ (#9214)
|
2018-09-14 17:01:58 -07:00 |
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flash
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flatbuffers
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flecsale
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flecsi
|
flecsi: fix build (#9129)
|
2018-08-29 09:23:02 -06:00 |
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flex
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flint
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flit
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fltk
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flux-core
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flux-sched
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fluxbox
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fmt
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foam-extend
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folly
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font-adobe-75dpi
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font-adobe-100dpi
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font-adobe-utopia-75dpi
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font-adobe-utopia-100dpi
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font-adobe-utopia-type1
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font-alias
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font-arabic-misc
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font-bh-75dpi
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font-bh-100dpi
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font-bh-lucidatypewriter-75dpi
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font-bh-lucidatypewriter-100dpi
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font-bh-ttf
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font-bh-type1
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font-bitstream-75dpi
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font-bitstream-100dpi
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font-bitstream-speedo
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font-bitstream-type1
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font-cronyx-cyrillic
|
|
|
|
font-cursor-misc
|
|
|
|
font-daewoo-misc
|
|
|
|
font-dec-misc
|
|
|
|
font-ibm-type1
|
|
|
|
font-isas-misc
|
|
|
|
font-jis-misc
|
|
|
|
font-micro-misc
|
|
|
|
font-misc-cyrillic
|
|
|
|
font-misc-ethiopic
|
|
|
|
font-misc-meltho
|
|
|
|
font-misc-misc
|
|
|
|
font-mutt-misc
|
|
|
|
font-schumacher-misc
|
|
|
|
font-screen-cyrillic
|
|
|
|
font-sony-misc
|
|
|
|
font-sun-misc
|
|
|
|
font-util
|
|
|
|
font-winitzki-cyrillic
|
|
|
|
font-xfree86-type1
|
|
|
|
fontcacheproto
|
|
|
|
fontconfig
|
|
|
|
fontsproto
|
|
|
|
fonttosfnt
|
|
|
|
fp16
|
|
|
|
fpc
|
|
|
|
fr-hit
|
|
|
|
freebayes
|
|
|
|
freeglut
|
|
|
|
freetype
|
|
|
|
fseq
|
|
|
|
fsl
|
|
|
|
fslsfonts
|
|
|
|
fstobdf
|
|
|
|
ftgl
|
|
|
|
funhpc
|
|
|
|
fyba
|
|
|
|
gapbs
|
|
|
|
gapcloser
|
|
|
|
gapfiller
|
|
|
|
gasnet
|
gasnet:version bump (#9127)
|
2018-08-29 06:48:52 +02:00 |
|
gatk
|
gatk: new version (#9202)
|
2018-09-14 13:55:52 -07:00 |
|
gaussian
|
|
|
|
gawk
|
|
|
|
gblocks
|
|
|
|
gcc
|
|
|
|
gccmakedep
|
|
|
|
gccxml
|
|
|
|
gconf
|
|
|
|
gcta
|
|
|
|
gdal
|
GDAL: add version 2.3.1 (#9156)
|
2018-09-01 07:32:24 -05:00 |
|
gdb
|
gdb: add lzma support by default (#9247)
|
2018-09-15 09:06:16 -05:00 |
|
gdbm
|
|
|
|
gdk-pixbuf
|
|
|
|
gdl
|
|
|
|
geant4
|
|
|
|
gearshifft
|
|
|
|
gemmlowp
|
|
|
|
genemark-et
|
|
|
|
genomefinisher
|
|
|
|
genometools
|
|
|
|
geopm
|
|
|
|
geos
|
|
|
|
gettext
|
|
|
|
gflags
|
|
|
|
ghost
|
|
|
|
ghostscript
|
|
|
|
ghostscript-fonts
|
|
|
|
giflib
|
|
|
|
git
|
|
|
|
git-imerge
|
|
|
|
git-lfs
|
|
|
|
gl2ps
|
|
|
|
glew
|
|
|
|
glfmultiples
|
|
|
|
glib
|
|
|
|
glibmm
|
|
|
|
glimmer
|
|
|
|
glm
|
|
|
|
global
|
|
|
|
globalarrays
|
|
|
|
globus-toolkit
|
|
|
|
glog
|
|
|
|
gloo
|
|
|
|
glpk
|
|
|
|
glproto
|
|
|
|
glvis
|
|
|
|
gmake
|
|
|
|
gmap-gsnap
|
gmap-gsnap: Add variant for different cpu support. (#8087)
|
2018-09-26 11:56:39 -05:00 |
|
gmime
|
|
|
|
gmodel
|
gmodel: new package starting at 2.1.0 (#9170)
|
2018-09-06 10:48:08 +02:00 |
|
gmp
|
|
|
|
gmsh
|
gmsh: add git master and 4.0.0 versions (#9172)
|
2018-09-06 10:42:40 +02:00 |
|
gnat
|
|
|
|
gnu-prolog
|
|
|
|
gnupg
|
|
|
|
gnuplot
|
|
|
|
gnutls
|
|
|
|
go
|
go: Update to 1.11 (#9101)
|
2018-08-29 07:00:40 +02:00 |
|
go-bootstrap
|
|
|
|
gobject-introspection
|
|
|
|
googletest
|
|
|
|
gotcha
|
|
|
|
gource
|
|
|
|
gperf
|
|
|
|
gperftools
|
|
|
|
gplates
|
|
|
|
grackle
|
|
|
|
gradle
|
|
|
|
grandr
|
|
|
|
graph500
|
|
|
|
graphicsmagick
|
|
|
|
graphlib
|
|
|
|
graphmap
|
|
|
|
graphviz
|
|
|
|
grass
|
|
|
|
grib-api
|
|
|
|
grnboost
|
|
|
|
groff
|
|
|
|
gromacs
|
|
|
|
gsl
|
|
|
|
gslib
|
|
|
|
gtkmm
|
|
|
|
gtkorvo-atl
|
|
|
|
gtkorvo-cercs-env
|
|
|
|
gtkorvo-dill
|
|
|
|
gtkorvo-enet
|
|
|
|
gtkplus
|
|
|
|
gts
|
|
|
|
guidance
|
|
|
|
guile
|
|
|
|
gurobi
|
|
|
|
h5hut
|
|
|
|
h5part
|
|
|
|
h5utils
|
|
|
|
h5z-zfp
|
|
|
|
hacckernels
|
|
|
|
hadoop
|
hadoop package: fix url and checksum (#9263)
|
2018-09-18 18:49:52 -07:00 |
|
halc
|
|
|
|
hapcut2
|
|
|
|
hapdip
|
|
|
|
haploview
|
|
|
|
harfbuzz
|
|
|
|
harminv
|
|
|
|
hdf
|
|
|
|
hdf5
|
hdf5@1.10.3: new version (#9121)
|
2018-08-29 10:58:24 +02:00 |
|
hdf5-blosc
|
|
|
|
help2man
|
|
|
|
hepmc
|
|
|
|
heppdt
|
|
|
|
hic-pro
|
|
|
|
highfive
|
|
|
|
highwayhash
|
|
|
|
hiop
|
|
|
|
hisat2
|
|
|
|
hisea
|
|
|
|
hmmer
|
|
|
|
hoomd-blue
|
|
|
|
hpccg
|
|
|
|
hpctoolkit
|
|
|
|
hpctoolkit-externals
|
|
|
|
hpgmg
|
|
|
|
hpl
|
|
|
|
hpx
|
|
|
|
hpx5
|
|
|
|
hsakmt
|
|
|
|
hstr
|
|
|
|
htop
|
|
|
|
htslib
|
|
|
|
httpie
|
|
|
|
hub
|
|
|
|
hunspell
|
|
|
|
hwloc
|
Hwloc add update 2.0.2 (#9244)
|
2018-09-14 10:48:38 -07:00 |
|
hybpiper
|
|
|
|
hydra
|
|
|
|
hydrogen
|
|
|
|
hypre
|
hypre: patch +shared@2.13.0: on darwin (#9220)
|
2018-09-14 17:14:30 -07:00 |
|
i3
|
|
|
|
ibmisc
|
|
|
|
iceauth
|
|
|
|
icedtea
|
Java updates: new versions, classpath, and JAVA_HOME (#8613)
|
2018-08-28 14:35:13 -04:00 |
|
icet
|
|
|
|
ico
|
|
|
|
icu4c
|
|
|
|
id3lib
|
|
|
|
idba
|
|
|
|
igraph
|
|
|
|
igv
|
|
|
|
igvtools
|
|
|
|
ilmbase
|
|
|
|
image-magick
|
|
|
|
imake
|
|
|
|
imp
|
|
|
|
impute2
|
|
|
|
infernal
|
|
|
|
inputproto
|
|
|
|
intel
|
Intel prefixes (#7469)
|
2018-08-29 21:09:34 -07:00 |
|
intel-daal
|
intel: add 2019.0 (#9328)
|
2018-09-24 21:27:43 -05:00 |
|
intel-gpu-tools
|
|
|
|
intel-ipp
|
intel: add 2019.0 (#9328)
|
2018-09-24 21:27:43 -05:00 |
|
intel-mkl
|
intel: add 2019.0 (#9328)
|
2018-09-24 21:27:43 -05:00 |
|
intel-mkl-dnn
|
|
|
|
intel-mpi
|
intel: add 2019.0 (#9328)
|
2018-09-24 21:27:43 -05:00 |
|
intel-parallel-studio
|
Intel prefixes (#7469)
|
2018-08-29 21:09:34 -07:00 |
|
intel-tbb
|
intel: add 2019.0 (#9328)
|
2018-09-24 21:27:43 -05:00 |
|
intel-xed
|
|
|
|
intltool
|
|
|
|
ior
|
|
|
|
iozone
|
|
|
|
iperf2
|
|
|
|
iperf3
|
|
|
|
ipopt
|
ipopt: add debug variant (#9223)
|
2018-09-14 15:53:25 -07:00 |
|
isaac
|
|
|
|
isaac-server
|
|
|
|
isl
|
|
|
|
itstool
|
|
|
|
itsx
|
|
|
|
jackcess
|
Add MDB driver support to GDAL (#8614)
|
2018-08-29 12:35:56 -05:00 |
|
jags
|
|
|
|
jansson
|
|
|
|
jasper
|
|
|
|
jbigkit
|
|
|
|
jchronoss
|
|
|
|
jdk
|
jdk: added 10.0.2_13 (#9203)
|
2018-09-14 17:17:32 -07:00 |
|
jellyfish
|
|
|
|
jemalloc
|
|
|
|
jmol
|
|
|
|
jq
|
|
|
|
json-c
|
|
|
|
json-cwx
|
|
|
|
json-glib
|
|
|
|
jsoncpp
|
|
|
|
judy
|
|
|
|
julia
|
|
|
|
k8
|
|
|
|
kahip
|
|
|
|
kaiju
|
|
|
|
kaks-calculator
|
|
|
|
kaldi
|
|
|
|
kallisto
|
|
|
|
kbproto
|
|
|
|
kdiff3
|
|
|
|
kealib
|
|
|
|
kentutils
|
|
|
|
kibana
|
Added Kibana package, added Elasticsearch to 6.4.0 (#9239)
|
2018-09-14 10:50:20 -07:00 |
|
kim-api
|
|
|
|
kmergenie
|
|
|
|
kokkos
|
|
|
|
kraken
|
|
|
|
krb5
|
|
|
|
krims
|
|
|
|
kripke
|
|
|
|
kvasir-mpl
|
|
|
|
kvtree
|
|
|
|
laghos
|
update URLs for Laghos and MACSio (#9351)
|
2018-09-26 17:22:05 -06:00 |
|
lammps
|
|
|
|
last
|
|
|
|
latte
|
|
|
|
launchmon
|
|
|
|
lazyten
|
|
|
|
lbann
|
|
|
|
lbxproxy
|
|
|
|
lcals
|
|
|
|
lcms
|
|
|
|
ldc
|
|
|
|
ldc-bootstrap
|
|
|
|
legion
|
|
|
|
leveldb
|
|
|
|
lftp
|
|
|
|
libaec
|
|
|
|
libaio
|
|
|
|
libapplewm
|
|
|
|
libarchive
|
|
|
|
libassuan
|
|
|
|
libatomic-ops
|
|
|
|
libbeagle
|
|
|
|
libbeato
|
|
|
|
libbsd
|
|
|
|
libbson
|
|
|
|
libcanberra
|
|
|
|
libcap
|
|
|
|
libceed
|
|
|
|
libcerf
|
|
|
|
libcheck
|
|
|
|
libcint
|
|
|
|
libcircle
|
|
|
|
libconfig
|
|
|
|
libcroco
|
|
|
|
libctl
|
|
|
|
libdivsufsort
|
|
|
|
libdmx
|
|
|
|
libdrm
|
|
|
|
libdwarf
|
|
|
|
libedit
|
|
|
|
libelf
|
|
|
|
libemos
|
|
|
|
libepoxy
|
|
|
|
libev
|
|
|
|
libevent
|
|
|
|
libevpath
|
|
|
|
libfabric
|
|
|
|
libffi
|
Build Python 3.7 with external libffi. (#9245)
|
2018-09-14 17:07:13 -07:00 |
|
libffs
|
|
|
|
libfontenc
|
|
|
|
libfs
|
|
|
|
libgcrypt
|
|
|
|
libgd
|
|
|
|
libgeotiff
|
|
|
|
libgit2
|
|
|
|
libgpg-error
|
|
|
|
libgpuarray
|
|
|
|
libgridxc
|
|
|
|
libgtextutils
|
|
|
|
libharu
|
|
|
|
libhio
|
libhio: add patch for 1.4.1.2 release (#9270)
|
2018-09-18 17:26:34 -06:00 |
|
libiberty
|
|
|
|
libice
|
|
|
|
libiconv
|
|
|
|
libint
|
|
|
|
libjpeg
|
|
|
|
libjpeg-turbo
|
|
|
|
libksba
|
|
|
|
liblbxutil
|
|
|
|
liblockfile
|
|
|
|
libmatheval
|
|
|
|
libmaxminddb
|
|
|
|
libmesh
|
libMesh: New variant and updated recent versions. (#9186)
|
2018-09-07 21:13:34 -07:00 |
|
libmng
|
|
|
|
libmongoc
|
|
|
|
libmonitor
|
|
|
|
libnbc
|
|
|
|
libnl
|
|
|
|
libnova
|
|
|
|
libogg
|
|
|
|
liboldx
|
|
|
|
libpcap
|
|
|
|
libpciaccess
|
|
|
|
libpfm4
|
|
|
|
libpipeline
|
|
|
|
libpng
|
libpng package: add version (#9142)
|
2018-08-31 10:26:13 -07:00 |
|
libpsl
|
|
|
|
libpthread-stubs
|
|
|
|
libquo
|
|
|
|
librom
|
|
|
|
libshm
|
|
|
|
libsigcpp
|
|
|
|
libsigsegv
|
|
|
|
libsm
|
|
|
|
libsodium
|
|
|
|
libspatialindex
|
|
|
|
libsplash
|
|
|
|
libssh
|
|
|
|
libssh2
|
|
|
|
libsvm
|
|
|
|
libszip
|
|
|
|
libtermkey
|
|
|
|
libtiff
|
|
|
|
libtool
|
|
|
|
libunistring
|
|
|
|
libunwind
|
|
|
|
libuuid
|
|
|
|
libuv
|
|
|
|
libvorbis
|
|
|
|
libvterm
|
|
|
|
libwebsockets
|
|
|
|
libwindowswm
|
|
|
|
libx11
|
|
|
|
libxau
|
|
|
|
libxaw
|
|
|
|
libxaw3d
|
|
|
|
libxc
|
|
|
|
libxcb
|
|
|
|
libxcomposite
|
|
|
|
libxcursor
|
|
|
|
libxdamage
|
|
|
|
libxdmcp
|
|
|
|
libxevie
|
|
|
|
libxext
|
|
|
|
libxfixes
|
|
|
|
libxfont
|
|
|
|
libxfont2
|
|
|
|
libxfontcache
|
|
|
|
libxft
|
|
|
|
libxi
|
|
|
|
libxinerama
|
|
|
|
libxkbcommon
|
|
|
|
libxkbfile
|
|
|
|
libxkbui
|
|
|
|
libxml2
|
|
|
|
libxmu
|
|
|
|
libxp
|
|
|
|
libxpm
|
|
|
|
libxpresent
|
|
|
|
libxprintapputil
|
|
|
|
libxprintutil
|
|
|
|
libxrandr
|
|
|
|
libxrender
|
|
|
|
libxres
|
|
|
|
libxscrnsaver
|
|
|
|
libxshmfence
|
|
|
|
libxslt
|
|
|
|
libxsmm
|
|
|
|
libxstream
|
|
|
|
libxt
|
|
|
|
libxtrap
|
|
|
|
libxtst
|
|
|
|
libxv
|
|
|
|
libxvmc
|
|
|
|
libxxf86dga
|
|
|
|
libxxf86misc
|
|
|
|
libxxf86vm
|
|
|
|
libyogrt
|
|
|
|
libzip
|
|
|
|
lighttpd
|
lighttpd: new package starting at 1.4.50 (#9325)
|
2018-09-24 21:33:39 -05:00 |
|
likwid
|
|
|
|
linkphase3
|
|
|
|
linux-headers
|
|
|
|
listres
|
|
|
|
llvm
|
Added llvm 7.0.0 (#9296)
|
2018-09-20 17:21:42 +02:00 |
|
llvm-openmp-ompt
|
|
|
|
lmdb
|
|
|
|
lmod
|
|
|
|
lndir
|
|
|
|
log4cplus
|
|
|
|
log4cxx
|
|
|
|
loki
|
|
|
|
lordec
|
|
|
|
lrslib
|
|
|
|
lrzip
|
|
|
|
lsof
|
|
|
|
ltrace
|
|
|
|
lua
|
|
|
|
lua-bitlib
|
|
|
|
lua-jit
|
|
|
|
lua-lpeg
|
|
|
|
lua-luafilesystem
|
|
|
|
lua-luaposix
|
|
|
|
lua-mpack
|
|
|
|
luit
|
|
|
|
lulesh
|
|
|
|
lumpy-sv
|
|
|
|
lwgrp
|
|
|
|
lwm2
|
|
|
|
lz4
|
|
|
|
lzma
|
|
|
|
lzo
|
|
|
|
m4
|
|
|
|
macsio
|
update URLs for Laghos and MACSio (#9351)
|
2018-09-26 17:22:05 -06:00 |
|
mad-numdiff
|
|
|
|
mafft
|
|
|
|
magics
|
|
|
|
magma
|
|
|
|
makedepend
|
|
|
|
mallocmc
|
|
|
|
man-db
|
|
|
|
manta
|
|
|
|
maq
|
|
|
|
mariadb
|
|
|
|
masa
|
|
|
|
masurca
|
|
|
|
matio
|
|
|
|
matlab
|
|
|
|
maven
|
|
|
|
maverick
|
|
|
|
mawk
|
|
|
|
mbedtls
|
|
|
|
mc
|
|
|
|
mcl
|
|
|
|
mdtest
|
|
|
|
med
|
|
|
|
meep
|
|
|
|
mefit
|
|
|
|
megahit
|
|
|
|
memaxes
|
|
|
|
meme
|
|
|
|
memkind
|
|
|
|
meraculous
|
|
|
|
mercurial
|
|
|
|
mesa
|
|
|
|
mesa-glu
|
|
|
|
meshkit
|
|
|
|
meson
|
|
|
|
mesquite
|
|
|
|
metabat
|
|
|
|
metaphysicl
|
|
|
|
metasv
|
metasv: add required dependencies (#9254)
|
2018-09-14 15:49:11 -07:00 |
|
metis
|
|
|
|
mfem
|
|
|
|
microbiomeutil
|
|
|
|
minced
|
|
|
|
mindthegap
|
|
|
|
miniaero
|
|
|
|
miniamr
|
miniamr: added v1.4.1 (#9225)
|
2018-09-14 16:56:59 -07:00 |
|
miniasm
|
|
|
|
miniconda2
|
|
|
|
miniconda3
|
|
|
|
minife
|
|
|
|
minighost
|
|
|
|
minigmg
|
|
|
|
minimap2
|
|
|
|
minimd
|
|
|
|
miniqmc
|
miniQMC: add newer releases and ecp-proxy-app tag (#9233)
|
2018-09-14 15:54:21 -07:00 |
|
minisign
|
|
|
|
minismac2d
|
|
|
|
minitri
|
|
|
|
minivite
|
miniVite: new package (#9348)
|
2018-09-26 19:48:34 -06:00 |
|
minixyce
|
|
|
|
minuit
|
|
|
|
mira
|
|
|
|
mirdeep2
|
|
|
|
mitofates
|
|
|
|
mitos
|
|
|
|
mkfontdir
|
|
|
|
mkfontscale
|
|
|
|
mlhka
|
|
|
|
moab
|
|
|
|
modern-wheel
|
|
|
|
mofem-cephas
|
|
|
|
mofem-fracture-module
|
|
|
|
mofem-minimal-surface-equation
|
|
|
|
mofem-users-modules
|
|
|
|
molcas
|
|
|
|
mono
|
|
|
|
mosh
|
|
|
|
mothur
|
|
|
|
motif
|
|
|
|
motioncor2
|
motioncor2 - added version 1.1.0 and removed old, unlisted versions (#9229)
|
2018-09-14 13:57:22 -07:00 |
|
mount-point-attributes
|
|
|
|
mozjs
|
|
|
|
mpark-variant
|
|
|
|
mpc
|
|
|
|
mpe2
|
|
|
|
mpest
|
|
|
|
mpfr
|
|
|
|
mpibash
|
|
|
|
mpiblast
|
|
|
|
mpich
|
|
|
|
mpifileutils
|
mpifileutils: add v0.8 (#9152)
|
2018-09-03 20:34:07 -05:00 |
|
mpilander
|
|
|
|
mpileaks
|
|
|
|
mpip
|
|
|
|
mpir
|
|
|
|
mpix-launch-swift
|
|
|
|
mrbayes
|
|
|
|
mrnet
|
|
|
|
mrtrix3
|
|
|
|
mscgen
|
|
|
|
msgpack-c
|
msgpack-c, snappy: explicitly depend on googletest (#9167)
|
2018-09-03 20:25:17 -05:00 |
|
mshadow
|
|
|
|
multitail
|
|
|
|
multiverso
|
|
|
|
mummer
|
|
|
|
mumps
|
|
|
|
munge
|
|
|
|
muparser
|
|
|
|
muscle
|
|
|
|
muse
|
|
|
|
muster
|
|
|
|
mvapich2
|
|
|
|
mxml
|
|
|
|
mxnet
|
mxnet: added 1.3.0 (#9236)
|
2018-09-14 11:01:30 -07:00 |
|
nag
|
|
|
|
nalu
|
|
|
|
nalu-wind
|
|
|
|
namd
|
Charmpp: rename charm to charmpp according to ++ conventions (#9216)
|
2018-09-14 17:01:07 -07:00 |
|
nano
|
|
|
|
nanoflann
|
|
|
|
nanopb
|
|
|
|
nasm
|
|
|
|
nauty
|
|
|
|
ncbi-magicblast
|
|
|
|
ncbi-rmblastn
|
|
|
|
ncbi-toolkit
|
|
|
|
nccl
|
|
|
|
nccmp
|
|
|
|
ncdu
|
|
|
|
ncftp
|
|
|
|
ncl
|
|
|
|
nco
|
|
|
|
ncurses
|
|
|
|
ncview
|
|
|
|
ndiff
|
|
|
|
nek5000
|
|
|
|
nekbone
|
|
|
|
nekcem
|
|
|
|
nektar
|
|
|
|
neovim
|
|
|
|
nest
|
New package: NEST Simulator (#9092)
|
2018-08-29 13:30:29 -04:00 |
|
netcdf
|
|
|
|
netcdf-cxx
|
|
|
|
netcdf-cxx4
|
|
|
|
netcdf-fortran
|
|
|
|
netgauge
|
|
|
|
netgen
|
|
|
|
netlib-lapack
|
|
|
|
netlib-scalapack
|
|
|
|
netlib-xblas
|
|
|
|
nettle
|
|
|
|
neuron
|
|
|
|
nextflow
|
|
|
|
nfft
|
|
|
|
nghttp2
|
|
|
|
nginx
|
|
|
|
ngmlr
|
|
|
|
ninja
|
|
|
|
ninja-fortran
|
|
|
|
nlohmann-json
|
|
|
|
nlopt
|
nlopt: Only support release>=2.5.0, since earlier release tarballs were actually AutoTools, not CMake. (#9110)
|
2018-09-03 20:56:48 -05:00 |
|
nmap
|
|
|
|
nnvm
|
|
|
|
node-js
|
|
|
|
notmuch
|
|
|
|
npb
|
|
|
|
npm
|
|
|
|
npth
|
|
|
|
nspr
|
|
|
|
numactl
|
|
|
|
numdiff
|
|
|
|
nut
|
|
|
|
nwchem
|
NWChem 6.8.1 (#9140)
|
2018-09-03 20:36:49 -05:00 |
|
ocaml
|
|
|
|
occa
|
|
|
|
oce
|
|
|
|
oclint
|
|
|
|
oclock
|
|
|
|
octave
|
Java updates: new versions, classpath, and JAVA_HOME (#8613)
|
2018-08-28 14:35:13 -04:00 |
|
octave-optim
|
|
|
|
octave-splines
|
|
|
|
octave-struct
|
|
|
|
octopus
|
|
|
|
of-adios-write
|
|
|
|
of-precice
|
|
|
|
omega-h
|
omega-h: add versions and variants (#9169)
|
2018-09-05 11:01:45 -07:00 |
|
ompss
|
|
|
|
ompt-openmp
|
|
|
|
oniguruma
|
|
|
|
ont-albacore
|
|
|
|
opa-psm2
|
|
|
|
opam
|
|
|
|
opari2
|
|
|
|
openbabel
|
|
|
|
openblas
|
openblas: add @0.3.1, patch CMake export bug in @0.3.1:0.3.2 (#9123)
|
2018-09-03 20:49:45 -05:00 |
|
opencoarrays
|
OpenCoarrays: update v2.2.0 (#9215)
|
2018-09-14 16:59:19 -07:00 |
|
opencv
|
add opencv@3.4.3 (#9213)
|
2018-09-14 17:05:05 -07:00 |
|
openexr
|
|
|
|
openfast
|
|
|
|
openfoam-com
|
patch for OF.com@18.06 to correctly find KAHIP (#8982)
|
2018-08-26 19:44:06 -05:00 |
|
openfoam-org
|
|
|
|
openfst
|
|
|
|
opengl
|
|
|
|
openglu
|
|
|
|
openjpeg
|
|
|
|
openmc
|
|
|
|
openmpi
|
Added legacylaunchers variant to openmpi (#9336)
|
2018-09-27 19:29:15 -07:00 |
|
opennurbs
|
|
|
|
openpmd-api
|
Catch2: 2.3.0+ (#9300)
|
2018-09-20 15:55:18 +02:00 |
|
openscenegraph
|
|
|
|
openslide
|
|
|
|
openspeedshop
|
Update openspeedshop and cbtf version numbers (#9150)
|
2018-09-03 20:35:25 -05:00 |
|
openspeedshop-utils
|
Update openspeedshop and cbtf version numbers (#9150)
|
2018-09-03 20:35:25 -05:00 |
|
openssh
|
|
|
|
openssl
|
Build Python 3.7 with external libffi. (#9245)
|
2018-09-14 17:07:13 -07:00 |
|
opium
|
|
|
|
optional-lite
|
Adds a package for optional-lite header-only library (#9117)
|
2018-08-29 18:14:59 +02:00 |
|
opus
|
|
|
|
orfm
|
|
|
|
orthofinder
|
|
|
|
orthomcl
|
|
|
|
osu-micro-benchmarks
|
|
|
|
otf
|
|
|
|
otf2
|
|
|
|
p4est
|
|
|
|
p7zip
|
|
|
|
pacbio-daligner
|
|
|
|
pacbio-damasker
|
|
|
|
pacbio-dazz-db
|
|
|
|
pacbio-dextractor
|
|
|
|
pagit
|
|
|
|
pagmo
|
|
|
|
paml
|
paml: remove old version, added 4.9h (#9360)
|
2018-09-26 19:03:35 -07:00 |
|
panda
|
|
|
|
pandaseq
|
|
|
|
pango
|
|
|
|
pangomm
|
|
|
|
papi
|
|
|
|
papyrus
|
|
|
|
paradiseo
|
|
|
|
parallel
|
|
|
|
parallel-netcdf
|
|
|
|
paraver
|
|
|
|
paraview
|
|
|
|
parmetis
|
|
|
|
parmgridgen
|
|
|
|
parquet
|
|
|
|
parsimonator
|
|
|
|
parsplice
|
|
|
|
partitionfinder
|
|
|
|
patch
|
|
|
|
patchelf
|
|
|
|
pathfinder
|
|
|
|
pax-utils
|
|
|
|
pbbam
|
|
|
|
pbmpi
|
|
|
|
pcma
|
|
|
|
pcre
|
|
|
|
pcre2
|
|
|
|
pdf2svg
|
|
|
|
pdftk
|
|
|
|
pdsh
|
|
|
|
pdt
|
|
|
|
pegtl
|
|
|
|
pennant
|
|
|
|
percept
|
|
|
|
perl
|
|
|
|
perl-algorithm-diff
|
|
|
|
perl-app-cmd
|
|
|
|
perl-array-utils
|
|
|
|
perl-b-hooks-endofscope
|
|
|
|
perl-bio-perl
|
|
|
|
perl-bit-vector
|
|
|
|
perl-cairo
|
|
|
|
perl-capture-tiny
|
|
|
|
perl-carp-clan
|
|
|
|
perl-class-data-inheritable
|
|
|
|
perl-class-inspector
|
|
|
|
perl-class-load
|
|
|
|
perl-class-load-xs
|
|
|
|
perl-compress-raw-bzip2
|
|
|
|
perl-compress-raw-zlib
|
|
|
|
perl-contextual-return
|
|
|
|
perl-cpan-meta-check
|
|
|
|
perl-data-optlist
|
|
|
|
perl-data-stag
|
|
|
|
perl-dbd-mysql
|
|
|
|
perl-dbfile
|
|
|
|
perl-dbi
|
|
|
|
perl-devel-cycle
|
|
|
|
perl-devel-globaldestruction
|
|
|
|
perl-devel-overloadinfo
|
|
|
|
perl-devel-stacktrace
|
|
|
|
perl-digest-md5
|
|
|
|
perl-dist-checkconflicts
|
|
|
|
perl-encode-locale
|
|
|
|
perl-eval-closure
|
|
|
|
perl-exception-class
|
|
|
|
perl-exporter-tiny
|
|
|
|
perl-extutils-depends
|
|
|
|
perl-extutils-makemaker
|
|
|
|
perl-extutils-pkgconfig
|
|
|
|
perl-file-copy-recursive
|
|
|
|
perl-file-listing
|
|
|
|
perl-file-pushd
|
|
|
|
perl-file-sharedir-install
|
|
|
|
perl-file-slurp-tiny
|
|
|
|
perl-file-slurper
|
|
|
|
perl-file-which
|
|
|
|
perl-font-ttf
|
|
|
|
perl-gd
|
|
|
|
perl-gd-graph
|
|
|
|
perl-gd-text
|
|
|
|
perl-gdgraph-histogram
|
perl-gdgraph-histogram: new package (#9250)
|
2018-09-14 15:50:18 -07:00 |
|
perl-graph
|
|
|
|
perl-graph-readwrite
|
|
|
|
perl-html-parser
|
|
|
|
perl-html-tagset
|
|
|
|
perl-http-cookies
|
|
|
|
perl-http-daemon
|
|
|
|
perl-http-date
|
|
|
|
perl-http-message
|
|
|
|
perl-http-negotiate
|
|
|
|
perl-inline
|
|
|
|
perl-inline-c
|
|
|
|
perl-intervaltree
|
|
|
|
perl-io-compress
|
|
|
|
perl-io-html
|
|
|
|
perl-io-sessiondata
|
|
|
|
perl-io-socket-ssl
|
|
|
|
perl-io-string
|
|
|
|
perl-json
|
|
|
|
perl-libwww-perl
|
|
|
|
perl-list-moreutils
|
|
|
|
perl-log-log4perl
|
|
|
|
perl-lwp
|
|
|
|
perl-lwp-mediatypes
|
|
|
|
perl-lwp-protocol-https
|
|
|
|
perl-math-cdf
|
|
|
|
perl-math-cephes
|
|
|
|
perl-math-matrixreal
|
|
|
|
perl-module-build
|
|
|
|
perl-module-implementation
|
|
|
|
perl-module-runtime
|
|
|
|
perl-module-runtime-conflicts
|
|
|
|
perl-moose
|
|
|
|
perl-mozilla-ca
|
|
|
|
perl-mro-compat
|
|
|
|
perl-namespace-clean
|
|
|
|
perl-net-http
|
|
|
|
perl-net-scp-expect
|
|
|
|
perl-net-ssleay
|
|
|
|
perl-package-deprecationmanager
|
|
|
|
perl-package-stash
|
|
|
|
perl-package-stash-xs
|
|
|
|
perl-padwalker
|
|
|
|
perl-parallel-forkmanager
|
|
|
|
perl-params-util
|
|
|
|
perl-parse-recdescent
|
|
|
|
perl-pdf-api2
|
|
|
|
perl-pegex
|
|
|
|
perl-perl6-slurp
|
|
|
|
perl-perlio-gzip
|
|
|
|
perl-perlio-utf8-strict
|
|
|
|
perl-soap-lite
|
|
|
|
perl-star-fusion
|
perl-star-fusion package: update latest version (#9104)
|
2018-08-28 13:22:18 -04:00 |
|
perl-statistics-descriptive
|
|
|
|
perl-statistics-pca
|
|
|
|
perl-sub-exporter
|
|
|
|
perl-sub-exporter-progressive
|
|
|
|
perl-sub-identify
|
|
|
|
perl-sub-install
|
|
|
|
perl-sub-name
|
|
|
|
perl-sub-uplevel
|
|
|
|
perl-svg
|
|
|
|
perl-swissknife
|
|
|
|
perl-task-weaken
|
|
|
|
perl-term-readkey
|
|
|
|
perl-test-cleannamespaces
|
|
|
|
perl-test-deep
|
|
|
|
perl-test-differences
|
|
|
|
perl-test-exception
|
|
|
|
perl-test-fatal
|
|
|
|
perl-test-memory-cycle
|
|
|
|
perl-test-most
|
|
|
|
perl-test-needs
|
|
|
|
perl-test-requires
|
|
|
|
perl-test-requiresinternet
|
|
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|
perl-test-warn
|
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perl-test-warnings
|
|
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|
perl-text-csv
|
|
|
|
perl-text-diff
|
|
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perl-text-simpletable
|
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perl-text-soundex
|
|
|
|
perl-text-unidecode
|
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perl-time-hires
|
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perl-time-piece
|
|
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|
perl-try-tiny
|
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perl-uri
|
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perl-uri-escape
|
|
|
|
perl-version
|
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perl-want
|
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perl-www-robotrules
|
|
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perl-xml-libxml
|
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perl-xml-parser
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perl-xml-parser-lite
|
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perl-xml-simple
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perl-yaml-libyaml
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|
petsc
|
petsc: add new versions 3.9.4 and 3.10.0 (#9319)
|
2018-09-24 23:57:38 -05:00 |
|
pexsi
|
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|
pfft
|
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pflotran
|
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pfunit
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pgdspider
|
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pgi
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pgmath
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phantompeakqualtools
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phast
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phasta
|
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phist
|
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phylip
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picard
|
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|
picsarlite
|
Spack package for PICSARlite (#9288)
|
2018-09-24 11:12:01 -06:00 |
|
pidx
|
|
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pigz
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pilon
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pindel
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piranha
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pism
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pixman
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pkg-config
|
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pkgconf
|
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planck-likelihood
|
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plasma
|
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|
platypus
|
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plink
|
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plplot
|
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plumed
|
plumed: updating plumed to latest version (#9227)
|
2018-09-14 17:13:22 -07:00 |
|
pmgr-collective
|
|
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pmix
|
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pnfft
|
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pngwriter
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pnmpi
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poamsa
|
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pocl
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polymake
|
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poppler
|
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|
poppler-data
|
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porta
|
|
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portage
|
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|
portcullis
|
portcullis: new package starting at 1.1.2 (#9218)
|
2018-09-14 15:55:58 -07:00 |
|
postgresql
|
|
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ppl
|
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prank
|
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precice
|
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presentproto
|
|
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|
preseq
|
|
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price
|
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primer3
|
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prinseq-lite
|
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printproto
|
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prng
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probconsrna
|
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prodigal
|
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proj
|
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protobuf
|
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proxymngr
|
|
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|
pruners-ninja
|
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ps-lite
|
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psi4
|
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|
pslib
|
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psm
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psmc
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|
pstreams
|
|
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pugixml
|
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pumi
|
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pv
|
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pvm
|
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pxz
|
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py-3to2
|
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|
py-4suite-xml
|
|
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|
py-abipy
|
|
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py-adios
|
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|
py-affine
|
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py-alabaster
|
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py-apache-libcloud
|
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|
py-apipkg
|
|
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py-appdirs
|
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py-appnope
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py-apscheduler
|
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py-argcomplete
|
|
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py-argparse
|
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py-ase
|
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py-asn1crypto
|
|
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|
py-astroid
|
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|
py-astropy
|
|
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|
py-atomicwrites
|
Update to latest version of pytest and dependencies (#9087)
|
2018-08-25 14:12:46 -05:00 |
|
py-attrs
|
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|
py-autopep8
|
|
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|
py-avro
|
|
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|
py-avro-json-serializer
|
|
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py-babel
|
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py-backcall
|
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py-backports-abc
|
|
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|
py-backports-functools-lru-cache
|
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py-backports-shutil-get-terminal-size
|
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|
py-backports-ssl-match-hostname
|
|
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|
py-basemap
|
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py-bcbio-gff
|
|
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|
py-beautifulsoup4
|
|
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py-binwalk
|
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py-biom-format
|
|
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py-biopython
|
|
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py-bitarray
|
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py-bitstring
|
|
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py-bleach
|
|
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|
py-blessings
|
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py-bokeh
|
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py-boltons
|
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|
py-bottleneck
|
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py-breakseq2
|
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py-brian
|
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py-brian2
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py-bsddb3
|
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py-bx-python
|
|
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|
py-cartopy
|
|
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|
py-cclib
|
|
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py-cdat-lite
|
|
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py-cdo
|
|
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|
py-certifi
|
|
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py-cffi
|
|
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py-chardet
|
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py-checkm-genome
|
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py-cheetah
|
|
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py-click
|
|
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|
py-cligj
|
|
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|
py-cloudpickle
|
|
|
|
py-cnvkit
|
|
|
|
py-cogent
|
Feature/py pycogent New-Version (#9095)
|
2018-09-04 14:34:18 -05:00 |
|
py-colorama
|
|
|
|
py-colormath
|
py-colormath: new version, requires newer networkx (#9237)
|
2018-09-14 10:35:45 -07:00 |
|
py-configparser
|
|
|
|
py-counter
|
|
|
|
py-coverage
|
|
|
|
py-cpuinfo
|
|
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|
py-crispresso
|
|
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|
py-crossmap
|
|
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|
py-cryptography
|
|
|
|
py-csvkit
|
|
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|
py-current
|
|
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|
py-cutadapt
|
|
|
|
py-cvxopt
|
|
|
|
py-cycler
|
|
|
|
py-cython
|
|
|
|
py-dask
|
|
|
|
py-dateutil
|
|
|
|
py-dbf
|
|
|
|
py-decorator
|
py-decorator: new version (#9240)
|
2018-09-14 15:51:43 -07:00 |
|
py-deeptools
|
|
|
|
py-dendropy
|
|
|
|
py-dill
|
|
|
|
py-discover
|
|
|
|
py-dlcpar
|
|
|
|
py-docopt
|
|
|
|
py-docutils
|
|
|
|
py-doxypy
|
|
|
|
py-doxypypy
|
|
|
|
py-dryscrape
|
|
|
|
py-dxchange
|
|
|
|
py-dxfile
|
|
|
|
py-easybuild-easyblocks
|
|
|
|
py-easybuild-easyconfigs
|
|
|
|
py-easybuild-framework
|
|
|
|
py-edffile
|
|
|
|
py-editdistance
|
|
|
|
py-elasticsearch
|
|
|
|
py-elephant
|
|
|
|
py-emcee
|
|
|
|
py-entrypoints
|
|
|
|
py-enum34
|
|
|
|
py-epydoc
|
|
|
|
py-espresso
|
py-espresso: apply patch to v4.0.0 only (#9196)
|
2018-09-13 10:00:21 +00:00 |
|
py-espressopp
|
|
|
|
py-et-xmlfile
|
|
|
|
py-eventlet
|
|
|
|
py-execnet
|
|
|
|
py-fastaindex
|
|
|
|
py-fasteners
|
|
|
|
py-faststructure
|
|
|
|
py-filelock
|
py-filelock: new package (#9136)
|
2018-08-31 11:21:55 -07:00 |
|
py-fiscalyear
|
|
|
|
py-flake8
|
|
|
|
py-flake8-polyfill
|
|
|
|
py-flask
|
|
|
|
py-flask-compress
|
|
|
|
py-flask-socketio
|
|
|
|
py-flexx
|
|
|
|
py-fn
|
|
|
|
py-fparser
|
|
|
|
py-funcsigs
|
Update to latest version of pytest and dependencies (#9087)
|
2018-08-25 14:12:46 -05:00 |
|
py-functools32
|
|
|
|
py-future
|
|
|
|
py-futures
|
|
|
|
py-gdbgui
|
|
|
|
py-genders
|
|
|
|
py-genshi
|
|
|
|
py-gevent
|
|
|
|
py-git2
|
|
|
|
py-git-review
|
|
|
|
py-gnuplot
|
|
|
|
py-goatools
|
|
|
|
py-gpaw
|
|
|
|
py-greenlet
|
|
|
|
py-griddataformats
|
|
|
|
py-guidata
|
|
|
|
py-guiqwt
|
|
|
|
py-h5py
|
py-h5py: add version 2.8.0 (#9231)
|
2018-09-14 15:56:44 -07:00 |
|
py-html2text
|
|
|
|
py-html5lib
|
|
|
|
py-htseq
|
|
|
|
py-httpbin
|
|
|
|
py-hypothesis
|
|
|
|
py-idna
|
|
|
|
py-igraph
|
|
|
|
py-illumina-utils
|
|
|
|
py-imageio
|
|
|
|
py-imagesize
|
|
|
|
py-iminuit
|
|
|
|
py-importlib
|
|
|
|
py-ipaddress
|
|
|
|
py-ipdb
|
|
|
|
py-ipykernel
|
|
|
|
py-ipython
|
|
|
|
py-ipython-genutils
|
|
|
|
py-ipywidgets
|
|
|
|
py-isort
|
|
|
|
py-itsdangerous
|
|
|
|
py-jdcal
|
|
|
|
py-jedi
|
|
|
|
py-jinja2
|
|
|
|
py-joblib
|
|
|
|
py-jpype
|
|
|
|
py-jsonschema
|
|
|
|
py-junit-xml
|
|
|
|
py-jupyter-client
|
|
|
|
py-jupyter-console
|
|
|
|
py-jupyter-core
|
|
|
|
py-jupyter-notebook
|
|
|
|
py-keras
|
|
|
|
py-kiwisolver
|
|
|
|
py-lark-parser
|
|
|
|
py-latexcodec
|
|
|
|
py-lazy
|
|
|
|
py-lazy-object-proxy
|
|
|
|
py-lazy-property
|
|
|
|
py-lazyarray
|
|
|
|
py-libconf
|
|
|
|
py-libensemble
|
Update py-libensemble package to v0.3.0 (#9210)
|
2018-09-14 17:15:31 -07:00 |
|
py-line-profiler
|
|
|
|
py-linecache2
|
|
|
|
py-lit
|
|
|
|
py-llvmlite
|
|
|
|
py-lmfit
|
|
|
|
py-localcider
|
|
|
|
py-locket
|
|
|
|
py-lockfile
|
|
|
|
py-logilab-common
|
|
|
|
py-lrudict
|
|
|
|
py-lxml
|
|
|
|
py-lzstring
|
|
|
|
py-macholib
|
|
|
|
py-machotools
|
|
|
|
py-macs2
|
|
|
|
py-maestrowf
|
py-maestrowf: Addition of new releases. (#9135)
|
2018-09-04 14:33:55 -05:00 |
|
py-mako
|
|
|
|
py-mappy
|
|
|
|
py-markdown
|
py-markdown: fix url and hashes (#9235)
|
2018-09-14 15:51:20 -07:00 |
|
py-markupsafe
|
|
|
|
py-matplotlib
|
py-matplotlib: incorporate 8532 w/ version range (#9151)
|
2018-09-03 20:34:41 -05:00 |
|
py-mccabe
|
|
|
|
py-mdanalysis
|
|
|
|
py-meep
|
|
|
|
py-memory-profiler
|
|
|
|
py-methylcode
|
|
|
|
py-mg-rast-tools
|
|
|
|
py-misopy
|
|
|
|
py-mistune
|
|
|
|
py-mock
|
|
|
|
py-moltemplate
|
|
|
|
py-mongo
|
|
|
|
py-monotonic
|
|
|
|
py-monty
|
|
|
|
py-more-itertools
|
Update to latest version of pytest and dependencies (#9087)
|
2018-08-25 14:12:46 -05:00 |
|
py-mpi4py
|
|
|
|
py-mpmath
|
|
|
|
py-multiprocess
|
|
|
|
py-multiqc
|
py-multiqc: needs newer py-spectra (#9226)
|
2018-09-14 15:52:29 -07:00 |
|
py-mx
|
|
|
|
py-mxnet
|
|
|
|
py-myhdl
|
|
|
|
py-mysqldb1
|
|
|
|
py-natsort
|
|
|
|
py-nbconvert
|
|
|
|
py-nbformat
|
|
|
|
py-neo
|
|
|
|
py-nestle
|
|
|
|
py-netcdf4
|
|
|
|
py-netifaces
|
|
|
|
py-networkx
|
py-networkx: new version (#9241)
|
2018-09-14 15:52:02 -07:00 |
|
py-nose
|
|
|
|
py-nosexcover
|
|
|
|
py-numba
|
|
|
|
py-numexpr
|
|
|
|
py-numexpr3
|
|
|
|
py-numpy
|
Update to latest version of pytest and dependencies (#9087)
|
2018-08-25 14:12:46 -05:00 |
|
py-numpydoc
|
|
|
|
py-olefile
|
|
|
|
py-ont-fast5-api
|
|
|
|
py-openpmd-validator
|
|
|
|
py-openpyxl
|
|
|
|
py-openslide-python
|
|
|
|
py-opentuner
|
|
|
|
py-ordereddict
|
|
|
|
py-oset
|
|
|
|
py-owslib
|
|
|
|
py-packaging
|
|
|
|
py-palettable
|
|
|
|
py-pandas
|
|
|
|
py-paramiko
|
|
|
|
py-partd
|
|
|
|
py-pathlib2
|
Update to latest version of pytest and dependencies (#9087)
|
2018-08-25 14:12:46 -05:00 |
|
py-pathos
|
|
|
|
py-pathspec
|
|
|
|
py-patsy
|
|
|
|
py-pbr
|
|
|
|
py-pep8-naming
|
|
|
|
py-perf
|
|
|
|
py-performance
|
|
|
|
py-periodictable
|
|
|
|
py-petsc4py
|
|
|
|
py-pexpect
|
|
|
|
py-phonopy
|
|
|
|
py-pickleshare
|
|
|
|
py-picrust
|
Feature/py picrust (#9184)
|
2018-09-14 17:24:17 -07:00 |
|
py-pil
|
|
|
|
py-pillow
|
|
|
|
py-pip
|
|
|
|
py-pipits
|
|
|
|
py-pkgconfig
|
|
|
|
py-plotly
|
|
|
|
py-pluggy
|
Update to latest version of pytest and dependencies (#9087)
|
2018-08-25 14:12:46 -05:00 |
|
py-ply
|
|
|
|
py-pmw
|
|
|
|
py-poster
|
|
|
|
py-pox
|
|
|
|
py-ppft
|
|
|
|
py-prettytable
|
|
|
|
py-proj
|
|
|
|
py-projectq
|
|
|
|
py-prompt-toolkit
|
|
|
|
py-protobuf
|
|
|
|
py-psutil
|
|
|
|
py-psyclone
|
|
|
|
py-ptyprocess
|
|
|
|
py-pudb
|
|
|
|
py-py
|
Update to latest version of pytest and dependencies (#9087)
|
2018-08-25 14:12:46 -05:00 |
|
py-py2bit
|
|
|
|
py-py2cairo
|
|
|
|
py-py2neo
|
|
|
|
py-py4j
|
|
|
|
py-pyani
|
|
|
|
py-pyasn1
|
|
|
|
py-pybedtools
|
|
|
|
py-pybigwig
|
|
|
|
py-pybind11
|
py-pybind11: add version 2.2.4 (#9355)
|
2018-09-26 19:19:46 -07:00 |
|
py-pybtex
|
|
|
|
py-pybtex-docutils
|
|
|
|
py-pychecker
|
|
|
|
py-pycodestyle
|
|
|
|
py-pycparser
|
|
|
|
py-pycrypto
|
|
|
|
py-pycurl
|
|
|
|
py-pydatalog
|
|
|
|
py-pydispatcher
|
|
|
|
py-pydot
|
|
|
|
py-pyelftools
|
|
|
|
py-pyepsg
|
|
|
|
py-pyfaidx
|
|
|
|
py-pyfasta
|
|
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py-pyfftw
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py-pyflakes
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py-pygdbmi
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py-pygments
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py-pygobject
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py-pygpu
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py-pygtk
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py-pylint
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py-pymatgen
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py-pyminifier
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py-pymol
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py-pympler
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py-pymysql
|
py-pymysql: new package (#9122)
|
2018-09-03 20:50:39 -05:00 |
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py-pynn
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py-pypar
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py-pyparsing
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py-pypeflow
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py-pyprof2html
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py-pyqi
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py-pyqt
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py-pyrad
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py-pysam
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py-pyscaf
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py-pyserial
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py-pyshp
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py-pyside
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py-pysocks
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py-pysqlite
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py-pytables
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py-pytest
|
Update to latest version of pytest and dependencies (#9087)
|
2018-08-25 14:12:46 -05:00 |
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py-pytest-cov
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py-pytest-flake8
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py-pytest-httpbin
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py-pytest-mock
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py-pytest-runner
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py-pytest-xdist
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py-python-daemon
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py-python-engineio
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py-python-gitlab
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py-python-levenshtein
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py-python-socketio
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py-pythonqwt
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py-pytorch
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py-pytz
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py-pyutilib
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py-pyvcf
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py-pywavelets
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py-pyyaml
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added version for kull support (#9141)
|
2018-09-03 20:36:15 -05:00 |
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py-qtawesome
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py-qtconsole
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py-qtpy
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py-quantities
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py-quast
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py-radical-utils
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py-ranger
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py-rasterio
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py-readme-renderer
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py-regex
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py-reportlab
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py-requests
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py-requests-toolbelt
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py-restview
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py-rope
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py-rpy2
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py-rsa
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py-rseqc
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py-rtree
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py-saga-python
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py-scandir
|
Update to latest version of pytest and dependencies (#9087)
|
2018-08-25 14:12:46 -05:00 |
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py-scientificpython
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py-scikit-image
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py-scikit-learn
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py-scipy
|
Update to latest version of pytest and dependencies (#9087)
|
2018-08-25 14:12:46 -05:00 |
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py-seaborn
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py-setuptools
|
Update to latest version of pytest and dependencies (#9087)
|
2018-08-25 14:12:46 -05:00 |
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py-setuptools-git
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py-setuptools-scm
|
Update to latest version of pytest and dependencies (#9087)
|
2018-08-25 14:12:46 -05:00 |
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py-sfepy
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py-sh
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py-shapely
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py-shiboken
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py-simplegeneric
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py-simplejson
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py-singledispatch
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py-sip
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py-six
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py-slepc4py
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py-slurm-pipeline
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py-sncosmo
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py-snowballstemmer
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py-snuggs
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py-spectra
|
py-spectra: new version (#9224)
|
2018-09-14 16:59:50 -07:00 |
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py-spefile
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py-spglib
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py-sphinx
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py-sphinx-bootstrap-theme
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py-sphinx-rtd-theme
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py-sphinxcontrib-bibtex
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py-sphinxcontrib-programoutput
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py-sphinxcontrib-websupport
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py-spyder
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py-spykeutils
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py-sqlalchemy
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py-statsmodels
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py-stevedore
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py-storm
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py-subprocess32
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py-symengine
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py-symfit
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py-sympy
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py-tabulate
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py-tappy
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py-terminado
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py-testinfra
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py-tetoolkit
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py-theano
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py-tifffile
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py-toml
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py-tomopy
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py-toolz
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py-tornado
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py-tqdm
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py-traceback2
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py-traitlets
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py-tuiview
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py-twisted
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py-typing
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py-tzlocal
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py-udunits
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py-umi-tools
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py-unittest2
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py-unittest2py3k
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py-urllib3
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py-urwid
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py-vcversioner
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py-virtualenv
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py-virtualenv-clone
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py-virtualenvwrapper
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py-vmd-python
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py-vsc-base
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py-vsc-install
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py-wcsaxes
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py-wcwidth
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py-webkit-server
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py-weblogo
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py-werkzeug
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py-wheel
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py-widgetsnbextension
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py-wrapt
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py-xarray
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py-xattr
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py-xlrd
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py-xlsxwriter
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py-xmlrunner
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py-xopen
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py-xpyb
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py-xvfbwrapper
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py-yamlreader
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py-yapf
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py-yt
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py-zmq
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py-zope-event
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py-zope-interface
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|
python
|
Build Python 3.7 with external libffi. (#9245)
|
2018-09-14 17:07:13 -07:00 |
|
qbank
|
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qbox
|
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qhull
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qmcpack
|
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qmd-progress
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qorts
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qrupdate
|
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qt
|
qt: fix dbus builds (#9315)
|
2018-09-25 11:33:19 -05:00 |
|
qt-creator
|
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qtgraph
|
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qthreads
|
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quantum-espresso
|
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|
quinoa
|
Charmpp: rename charm to charmpp according to ++ conventions (#9216)
|
2018-09-14 17:01:07 -07:00 |
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qwt
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r
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r-a4
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r-a4base
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r-a4classif
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r-a4core
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r-a4preproc
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r-a4reporting
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r-abadata
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r-abaenrichment
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r-abind
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r-absseq
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r-acde
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r-acepack
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r-acgh
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r-acme
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r-ada
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r-adabag
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r-ade4
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r-adegenet
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r-adsplit
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r-aer
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r-affxparser
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r-affy
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r-affycomp
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r-affycompatible
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r-affycontam
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r-affycoretools
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r-affydata
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r-affyexpress
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r-affyilm
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r-affyio
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r-affypdnn
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r-affyplm
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r-affyqcreport
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r-affyrnadegradation
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r-agdex
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r-agilp
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r-agimicrorna
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r-aims
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r-aldex2
|
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r-allelicimbalance
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r-alpine
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r-als
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r-alsace
|
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r-altcdfenvs
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r-amap
|
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r-ampliqueso
|
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r-analysispageserver
|
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r-anaquin
|
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r-aneufinder
|
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|
r-aneufinderdata
|
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|
r-animation
|
New package: r-animation (#9314)
|
2018-09-24 11:28:05 -07:00 |
|
r-annaffy
|
|
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r-annotate
|
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r-annotationdbi
|
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r-annotationfilter
|
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r-annotationforge
|
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r-annotationhub
|
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r-ape
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r-argparse
|
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r-assertthat
|
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r-backports
|
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r-bamsignals
|
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r-base64
|
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r-base64enc
|
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r-bbmisc
|
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r-beanplot
|
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r-bh
|
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r-biasedurn
|
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r-bindr
|
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r-bindrcpp
|
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r-biobase
|
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r-biocgenerics
|
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r-biocinstaller
|
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r-biocparallel
|
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|
r-biocstyle
|
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|
r-biom-utils
|
|
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|
r-biomart
|
r-biomart: new version; (#9058)
|
2018-09-03 21:03:47 -05:00 |
|
r-biomformat
|
|
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|
r-biostrings
|
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r-biovizbase
|
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r-bit
|
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r-bit64
|
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r-bitops
|
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r-blob
|
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r-bookdown
|
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r-boot
|
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r-brew
|
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r-broom
|
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r-bsgenome
|
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r-bumphunter
|
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r-c50
|
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r-callr
|
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r-car
|
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r-caret
|
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r-category
|
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r-catools
|
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r-cdcfluview
|
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r-cellranger
|
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r-cghflasso
|
|
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|
r-checkmate
|
|
|
|
r-checkpoint
|
|
|
|
r-chemometrics
|
Tanim (#9158)
|
2018-09-07 16:00:52 -05:00 |
|
r-chron
|
|
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|
r-circlize
|
|
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|
r-class
|
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r-classint
|
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|
r-cli
|
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r-clipr
|
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r-cluster
|
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r-clusterprofiler
|
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r-cner
|
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r-coda
|
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r-codetools
|
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r-coin
|
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r-colorspace
|
|
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|
r-complexheatmap
|
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r-corpcor
|
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r-corrplot
|
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r-covr
|
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r-cowplot
|
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r-crayon
|
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r-crosstalk
|
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r-ctc
|
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r-cubature
|
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r-cubist
|
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r-curl
|
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r-data-table
|
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r-dbi
|
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r-dbplyr
|
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r-delayedarray
|
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r-deldir
|
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r-dendextend
|
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r-deoptim
|
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r-deoptimr
|
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|
r-deseq
|
|
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r-deseq2
|
r-deseq2: new version (#9062)
|
2018-09-03 21:03:08 -05:00 |
|
r-desolve
|
|
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|
r-devtools
|
|
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|
r-diagrammer
|
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r-dicekriging
|
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r-dichromat
|
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r-diffusionmap
|
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r-digest
|
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r-diptest
|
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r-dirichletmultinomial
|
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r-dismo
|
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r-dnacopy
|
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r-do-db
|
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r-domc
|
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r-doparallel
|
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r-dorng
|
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r-dose
|
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|
r-downloader
|
|
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|
r-dplyr
|
new versions of r-dplyr,r-plogr,r-rlang (#9313)
|
2018-09-24 11:22:04 -07:00 |
|
r-dt
|
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r-dtw
|
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r-dygraphs
|
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r-e1071
|
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r-edger
|
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r-ellipse
|
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r-ensembldb
|
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r-ergm
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r-evaluate
|
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r-expm
|
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r-factoextra
|
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r-factominer
|
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r-fastcluster
|
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r-fastmatch
|
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r-ff
|
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r-fftwtools
|
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r-fgsea
|
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r-filehash
|
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r-findpython
|
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r-fit-models
|
|
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r-flashclust
|
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|
r-flexclust
|
|
|
|
r-flexmix
|
|
|
|
r-fnn
|
Tanim (#9158)
|
2018-09-07 16:00:52 -05:00 |
|
r-forcats
|
|
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|
r-foreach
|
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r-forecast
|
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r-foreign
|
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r-formatr
|
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r-formula
|
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r-fpc
|
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r-fracdiff
|
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r-futile-logger
|
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r-futile-options
|
|
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r-gbm
|
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|
r-gcrma
|
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r-gdata
|
|
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r-gdsfmt
|
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r-geiger
|
|
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r-genefilter
|
|
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|
r-genelendatabase
|
|
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|
r-geneplotter
|
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|
r-genie3
|
|
|
|
r-genomeinfodb
|
|
|
|
r-genomeinfodbdata
|
|
|
|
r-genomicalignments
|
r-genomicalignments: new version (#9055)
|
2018-09-03 21:04:22 -05:00 |
|
r-genomicfeatures
|
|
|
|
r-genomicranges
|
|
|
|
r-geomorph
|
|
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r-geoquery
|
|
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r-geosphere
|
|
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r-getopt
|
|
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r-getoptlong
|
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r-ggally
|
|
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r-ggbio
|
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r-ggdendro
|
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r-ggjoy
|
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r-ggmap
|
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r-ggplot2
|
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r-ggpubr
|
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r-ggrepel
|
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r-ggridges
|
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r-ggsci
|
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r-ggvis
|
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r-gistr
|
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r-git2r
|
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r-glimma
|
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r-glmnet
|
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r-globaloptions
|
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r-glue
|
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r-gmodels
|
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r-gmp
|
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r-go-db
|
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r-googlevis
|
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r-goplot
|
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r-gosemsim
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r-goseq
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r-goseq: new package (#8939)
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2018-08-26 19:45:23 -05:00 |
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r-gostats
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r-gplots
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r-graph
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r-gridbase
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r-gridextra
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r-gseabase
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r-gss
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r-gsubfn
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r-gtable
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r-gtools
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r-gtrellis
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r-gviz
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r-haven
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r-hexbin
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r-highr
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r-hmisc
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r-hms
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r-htmltable
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r-htmltools
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r-htmlwidgets
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r-httpuv
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r-httr
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r-hwriter
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r-hypergraph
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r-ica
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r-igraph
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r-illuminaio
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r-impute
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r-influencer
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r-inline
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r-interactivedisplaybase
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r-ipred
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r-iranges
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r-irdisplay
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r-irkernel
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r-irlba
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r-iso
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r-iterators
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r-janitor
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r-jaspar2018
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r-jomo
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r-jpeg
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r-jsonlite
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r-kegg-db
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r-kegggraph
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r-keggrest
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r-kernlab
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r-kernsmooth
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r-kknn
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r-knitr
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r-ks
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Tanim (#9158)
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2018-09-07 16:00:52 -05:00 |
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r-labeling
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r-lambda-r
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r-laplacesdemon
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r-lars
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Tanim (#9158)
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2018-09-07 16:00:52 -05:00 |
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r-lattice
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r-latticeextra
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r-lava
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r-lazyeval
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r-leaflet
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r-leaps
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r-learnbayes
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r-lhs
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r-limma
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r-lme4
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r-lmtest
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r-locfit
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r-log4r
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r-lpsolve
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r-lsei
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r-lubridate
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r-magic
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r-magrittr
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r-makecdfenv
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r-maldiquant
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r-mapproj
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r-maps
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r-maptools
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r-markdown
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r-mass
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r-matr
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r-matrix
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r-matrixmodels
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r-matrixstats
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r-mclust
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r-mcmcglmm
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r-mco
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r-mda
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r-memoise
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r-mergemaid
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r-methodss3
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r-mgcv
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r-mgraster
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r-mice
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r-mime
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r-minfi
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r-minqa
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r-misc3d
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r-mitml
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r-mixtools
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r-mlbench
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r-mlinterfaces
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r-mlr
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r-mlrmbo
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r-mmwrweek
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r-mnormt
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r-modelmetrics
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r-modelr
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r-modeltools
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r-mpm
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r-msnbase
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r-multcomp
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r-multicool
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Tanim (#9158)
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2018-09-07 16:00:52 -05:00 |
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r-multtest
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r-munsell
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r-mvtnorm
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r-mzid
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r-mzr
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r-nanotime
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r-ncbit
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r-ncdf4
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r-network
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r-networkd3
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r-nlme
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r-nloptr
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r-nloptr: Explicit depends_on(nlopt). Previously there was a hidden d… (#9176)
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2018-09-14 08:11:16 -05:00 |
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r-nmf
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r-nnet
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r-nnls
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r-nor1mix
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r-np
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r-numderiv
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r-oligoclasses
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r-oo
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r-openssl
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r-org-hs-eg-db
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r-organismdbi
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r-packrat
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r-pacman
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r-pamr
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r-pan
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r-parallelmap
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r-paramhelpers
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r-party
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r-partykit
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r-pathview
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r-pbapply
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r-pbdzmq
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r-pbkrtest
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r-pcamethods
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r-pcapp
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Tanim (#9158)
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2018-09-07 16:00:52 -05:00 |
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r-permute
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r-pfam-db
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r-phangorn
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r-phantompeakqualtools
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r-phyloseq
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r-picante
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r-pkgconfig
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r-pkgmaker
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r-plogr
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new versions of r-dplyr,r-plogr,r-rlang (#9313)
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2018-09-24 11:22:04 -07:00 |
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r-plot3d
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r-plotly
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r-plotrix
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r-pls
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r-plyr
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r-pmcmr
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r-png
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r-powerlaw
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r-prabclus
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r-praise
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r-preprocesscore
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r-prettyunits
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r-proc
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r-processx
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new package: r-processx (#9342)
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2018-09-26 19:12:06 -07:00 |
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r-prodlim
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r-progress
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r-protgenerics
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r-proto
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r-proxy
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r-pryr
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r-ps
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new package: r-ps (#9341)
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2018-09-26 19:08:55 -07:00 |
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r-psych
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r-ptw
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r-purrr
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r-quadprog
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r-quantmod
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r-quantreg
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r-quantro
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r-qvalue
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r-r6
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r-randomforest
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r-ranger
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r-rappdirs
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r-raster
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r-rbgl
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r-rbokeh
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r-rcolorbrewer
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r-rcpp
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r-rcpparmadillo
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r-rcppblaze
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r-rcppcctz
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r-rcppcnpy
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r-rcppeigen
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r-rcppprogress
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r-rcurl
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r-rda
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r-readr
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r-readxl
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r-registry
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r-rematch
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r-reordercluster
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r-reportingtools
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r-repr
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r-reprex
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r-reshape
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r-reshape2
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r-rex
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r-rgdal
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r-rgenoud
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r-rgeos
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r-rgl
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r-rgooglemaps
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r-rgraphviz
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r-rhdf5
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r-rhtslib
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r-rinside
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r-rjags
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r-rjava
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r-rjson
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r-rjsonio
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r-rlang
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new versions of r-dplyr,r-plogr,r-rlang (#9313)
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2018-09-24 11:22:04 -07:00 |
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r-rmarkdown
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r-rminer
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r-rmpfr
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r-rmpi
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r-rmysql
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r-rngtools
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r-robustbase
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r-rocr
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r-rodbc
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r-rots
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r-roxygen2
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r-rpart
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r-rpart-plot
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r-rpostgresql
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r-rprojroot
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r-rsamtools
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r-rsnns
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r-rsolnp
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r-rsqlite
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r-rstan
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r-rstudioapi
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r-rtracklayer
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r-rtsne
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r-rvcheck
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r-rvest
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r-rzmq
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r-s4vectors
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r-samr
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r-sandwich
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r-scales
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r-scatterplot3d
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r-sdmtools
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r-segmented
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r-selectr
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r-seqinr
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r-seqlogo
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r-seurat
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r-sf
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r-sfsmisc
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r-shape
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r-shiny
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r-shinydashboard
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r-shortread
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r-siggenes
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r-simpleaffy
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r-sm
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r-smoof
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r-sn
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r-snow
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r-snowfall
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r-snprelate
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r-som
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Tanim (#9158)
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2018-09-07 16:00:52 -05:00 |
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r-somaticsignatures
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r-sourcetools
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r-sp
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r-sparsem
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r-spatial
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r-spdep
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r-speedglm
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r-spem
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r-splitstackshape
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r-sqldf
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r-squash
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r-stanheaders
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r-statmod
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r-statnet-common
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r-stringi
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r-stringr
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r-strucchange
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r-subplex
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r-summarizedexperiment
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r-summarizedexperiment: new version (#9054)
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2018-09-04 14:34:45 -05:00 |
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r-survey
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r-survival
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r-sva
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r-tarifx
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r-tclust
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r-tensora
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r-testit
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r-testthat
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r-tfbstools
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r-tfmpvalue
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r-th-data
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r-threejs
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r-tibble
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r-tidycensus
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r-tidyr
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r-tidyselect
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r-tidyverse
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r-tiff
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r-tigris
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r-timedate
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r-tmixclust
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r-topgo
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r-trimcluster
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r-truncnorm
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r-trust
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r-tseries
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r-tsne
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r-ttr
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r-udunits2
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r-units
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r-utf8
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r-utils
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r-uuid
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r-variantannotation
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r-varselrf
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r-vcd
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r-vegan
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r-vgam
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r-vipor
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r-viridis
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r-viridislite
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r-visnetwork
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r-vsn
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r-whisker
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r-withr
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r-xde
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r-xgboost
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r-xlconnect
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r-xlconnectjars
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r-xlsx
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r-xlsxjars
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r-xmapbridge
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r-xml
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r-xml2
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r-xtable
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r-xts
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r-xvector
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r-yaml
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r-yapsa
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r-yaqcaffy
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r-yarn
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r-zlibbioc
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r-zoo
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racon
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raft
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ragel
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raja
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randfold
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random123
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randrproto
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range-v3
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rankstr
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rapidjson
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ravel
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raxml
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ray
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rclone
|
new package: rclone (#9268)
|
2018-09-18 18:39:07 -07:00 |
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rdma-core
|
Update rdma-core : new version and conflict with intel (#9255)
|
2018-09-15 19:42:45 -05:00 |
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rdp-classifier
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re2c
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readfq
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readline
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recordproto
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redset
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redundans
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relion
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rempi
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rename
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rendercheck
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renderproto
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repeatmasker
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resourceproto
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revbayes
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rgb
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rhash
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rlwrap
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rmats
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rmats: new package starting at 4.0.2 (#9243)
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2018-09-14 14:54:26 -07:00 |
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rmlab
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rna-seqc
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rngstreams
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rockstar
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root
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rose
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ross
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ROSS package: fix build error and add v7.0.0 (#9128)
|
2018-08-29 13:13:50 -04:00 |
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rr
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rsbench
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rsem
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rstart
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rsync
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rtags
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rtax
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ruby
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ruby-gnuplot
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ruby-narray
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ruby-ronn
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ruby-rubyinline
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ruby-svn2git
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ruby-terminal-table
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rust
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rust-bindgen
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sabre
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sailfish
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salmon
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|
sambamba
|
|
|
|
samblaster
|
|
|
|
samrai
|
|
|
|
samtools
|
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|
|
sandbox
|
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|
sas
|
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|
satsuma2
|
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|
savanna
|
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|
saws
|
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sbt
|
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|
scala
|
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|
|
scalasca
|
|
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|
scalpel
|
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|
|
scan-for-matches
|
|
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|
scons
|
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scorec-core
|
|
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|
scorep
|
|
|
|
scotch
|
|
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scr
|
|
|
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screen
|
|
|
|
scripts
|
|
|
|
scrnsaverproto
|
|
|
|
sctk
|
|
|
|
sdl2
|
|
|
|
sdl2-image
|
|
|
|
sed
|
|
|
|
seqan
|
|
|
|
seqprep
|
|
|
|
seqtk
|
|
|
|
serf
|
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sessreg
|
|
|
|
setxkbmap
|
|
|
|
sga
|
|
|
|
shapeit
|
|
|
|
shared-mime-info
|
|
|
|
shiny-server
|
|
|
|
shocklibs
|
|
|
|
shoremap
|
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|
shortbred
|
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shortstack
|
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showfont
|
|
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shuffile
|
|
|
|
sickle
|
|
|
|
siesta
|
|
|
|
signalp
|
|
|
|
signify
|
|
|
|
silo
|
Fix two dependencies with silo. (#9153)
|
2018-09-03 16:43:00 +02:00 |
|
simplemoc
|
|
|
|
simul
|
|
|
|
simulationio
|
|
|
|
singularity
|
singularity: new version
|
2018-08-31 08:47:24 -07:00 |
|
skilion-onedrive
|
Onedrive: a new package. (#9130)
|
2018-09-04 14:35:49 -05:00 |
|
sleef
|
|
|
|
slepc
|
petsc: add new versions 3.9.4 and 3.10.0 (#9319)
|
2018-09-24 23:57:38 -05:00 |
|
slurm
|
Added slurm 17.11 and 18.08 (#9345)
|
2018-09-27 13:34:41 -07:00 |
|
smalt
|
|
|
|
smproxy
|
|
|
|
snakemake
|
|
|
|
snap
|
|
|
|
snap-berkeley
|
|
|
|
snap-korf
|
|
|
|
snappy
|
msgpack-c, snappy: explicitly depend on googletest (#9167)
|
2018-09-03 20:25:17 -05:00 |
|
snbone
|
|
|
|
sniffles
|
|
|
|
snpeff
|
|
|
|
snphylo
|
|
|
|
snptest
|
|
|
|
soap2
|
|
|
|
soapdenovo2
|
|
|
|
soapdenovo-trans
|
|
|
|
soapindel
|
|
|
|
soapsnp
|
|
|
|
sofa-c
|
|
|
|
somatic-sniper
|
|
|
|
sortmerna
|
|
|
|
sosflow
|
|
|
|
sowing
|
|
|
|
sox
|
|
|
|
spades
|
|
|
|
span-lite
|
Adds a package for span-lite header-only library (#9118)
|
2018-08-29 11:01:35 +02:00 |
|
spark
|
Java updates: new versions, classpath, and JAVA_HOME (#8613)
|
2018-08-28 14:35:13 -04:00 |
|
sparsehash
|
|
|
|
sparta
|
|
|
|
spdlog
|
Add newer versions of spdlog (#9290)
|
2018-09-20 17:53:15 +02:00 |
|
spectrum-mpi
|
|
|
|
speex
|
|
|
|
spglib
|
|
|
|
sph2pipe
|
|
|
|
spherepack
|
|
|
|
spindle
|
|
|
|
spot
|
|
|
|
sqlite
|
Build Python 3.7 with external libffi. (#9245)
|
2018-09-14 17:07:13 -07:00 |
|
sqlitebrowser
|
|
|
|
squid
|
|
|
|
sra-toolkit
|
|
|
|
sspace-longread
|
|
|
|
sspace-standard
|
|
|
|
sst-dumpi
|
|
|
|
sst-macro
|
sst-macro package: add versions and variants (#9271)
|
2018-09-18 19:06:13 -07:00 |
|
stacks
|
|
|
|
staden-io-lib
|
|
|
|
star
|
star - added latest versions with shasum (#9257)
|
2018-09-16 15:44:33 -05:00 |
|
star-ccm-plus
|
|
|
|
startup-notification
|
|
|
|
stat
|
|
|
|
stc
|
|
|
|
steps
|
steps: new package starting at 3.3 (#9173)
|
2018-09-11 14:43:15 +02:00 |
|
stow
|
|
|
|
strace
|
|
|
|
stream
|
|
|
|
strelka
|
|
|
|
stress
|
|
|
|
string-view-lite
|
Add string-view-lite package for header only library (#9125)
|
2018-08-29 06:54:20 +02:00 |
|
stringtie
|
|
|
|
structure
|
|
|
|
sublime-text
|
|
|
|
subread
|
|
|
|
subversion
|
|
|
|
suite-sparse
|
|
|
|
sumaclust
|
|
|
|
sundials
|
SUNDIALS: add new versions, update hashes, and apply clang fix (#9115)
|
2018-08-31 12:14:15 -07:00 |
|
superlu
|
|
|
|
superlu-dist
|
superlu_dist: (master) has cxx11 sources - so update make.inc to list cxx11 compilers (#9316)
|
2018-09-24 21:53:14 -05:00 |
|
superlu-mt
|
|
|
|
supernova
|
|
|
|
sw4lite
|
sw4lite: add v1.1 (#9289)
|
2018-09-19 13:30:28 -06:00 |
|
swap-assembler
|
|
|
|
swarm
|
|
|
|
swfft
|
|
|
|
swiftsim
|
|
|
|
swig
|
|
|
|
symengine
|
|
|
|
sympol
|
|
|
|
sz
|
|
|
|
tabix
|
|
|
|
talass
|
new package: TALASS (#9326)
|
2018-09-26 18:15:47 -07:00 |
|
talloc
|
|
|
|
tantan
|
|
|
|
tar
|
|
|
|
targetp
|
|
|
|
task
|
|
|
|
taskd
|
|
|
|
tasmanian
|
|
|
|
tassel
|
|
|
|
tau
|
|
|
|
tcl
|
|
|
|
tcl-itcl
|
|
|
|
tcl-tcllib
|
|
|
|
tcl-tclxml
|
|
|
|
tclap
|
|
|
|
tcoffee
|
|
|
|
tcptrace
|
|
|
|
tcsh
|
|
|
|
tealeaf
|
|
|
|
templight
|
|
|
|
templight-tools
|
|
|
|
tetgen
|
|
|
|
tethex
|
|
|
|
texinfo
|
|
|
|
texlive
|
|
|
|
the-platinum-searcher
|
|
|
|
the-silver-searcher
|
|
|
|
thrift
|
Java updates: new versions, classpath, and JAVA_HOME (#8613)
|
2018-08-28 14:35:13 -04:00 |
|
thrust
|
|
|
|
tig
|
|
|
|
tinyxml
|
|
|
|
tinyxml2
|
|
|
|
tioga
|
|
|
|
tk
|
|
|
|
tmalign
|
|
|
|
tmhmm
|
|
|
|
tmux
|
|
|
|
tmuxinator
|
|
|
|
tophat
|
|
|
|
tppred
|
|
|
|
transabyss
|
|
|
|
transdecoder
|
|
|
|
transposome
|
|
|
|
transset
|
|
|
|
trapproto
|
|
|
|
tree
|
|
|
|
trf
|
|
|
|
triangle
|
|
|
|
trilinos
|
trilinos: disable xlf_tpetra.patch for trilinos@develop (#9193)
|
2018-09-08 23:51:16 -05:00 |
|
trimgalore
|
|
|
|
trimmomatic
|
|
|
|
trinity
|
trinity: full dependencies (#9064)
|
2018-09-04 14:35:06 -05:00 |
|
trnascan-se
|
|
|
|
turbine
|
|
|
|
turbomole
|
|
|
|
tut
|
|
|
|
twm
|
|
|
|
tycho2
|
|
|
|
typhon
|
|
|
|
typhonio
|
|
|
|
uberftp
|
|
|
|
ucx
|
new package versions: ucx, libhio, and hwloc (#9365)
|
2018-09-26 18:53:54 -07:00 |
|
udunits2
|
|
|
|
ufo-core
|
|
|
|
ufo-filters
|
|
|
|
umpire
|
|
|
|
unblur
|
|
|
|
uncrustify
|
|
|
|
unibilium
|
|
|
|
unison
|
|
|
|
units
|
|
|
|
unixodbc
|
|
|
|
unuran
|
|
|
|
unzip
|
|
|
|
usearch
|
|
|
|
util-linux
|
|
|
|
util-macros
|
|
|
|
uuid
|
|
|
|
valgrind
|
|
|
|
vampirtrace
|
|
|
|
vardictjava
|
|
|
|
varscan
|
|
|
|
vc
|
|
|
|
vcftools
|
|
|
|
vcsh
|
|
|
|
vdt
|
|
|
|
vecgeom
|
|
|
|
veclibfort
|
|
|
|
vegas2
|
|
|
|
veloc
|
|
|
|
velvet
|
|
|
|
verilator
|
|
|
|
verrou
|
|
|
|
videoproto
|
|
|
|
viennarna
|
|
|
|
viewres
|
|
|
|
vim
|
Vim: add version 8.1.0338 (#9155)
|
2018-09-01 08:12:14 -05:00 |
|
virtualgl
|
|
|
|
visit
|
|
|
|
vizglow
|
|
|
|
vmatch
|
|
|
|
voropp
|
|
|
|
votca-csg
|
|
|
|
votca-ctp
|
|
|
|
votca-tools
|
|
|
|
votca-xtp
|
|
|
|
vpfft
|
|
|
|
vpic
|
|
|
|
vsearch
|
|
|
|
vt
|
|
|
|
vtk
|
VTK package: don't require "+llvm" for mesa dependency (#9256)
|
2018-09-26 11:20:01 -07:00 |
|
vtkh
|
|
|
|
vtkm
|
|
|
|
wannier90
|
|
|
|
wcslib
|
|
|
|
wget
|
|
|
|
wgsim
|
|
|
|
windowswmproto
|
|
|
|
wireshark
|
|
|
|
workrave
|
|
|
|
wt
|
|
|
|
wx
|
|
|
|
wxpropgrid
|
|
|
|
x11perf
|
|
|
|
xapian-core
|
|
|
|
xauth
|
|
|
|
xbacklight
|
|
|
|
xbiff
|
|
|
|
xbitmaps
|
|
|
|
xbraid
|
|
|
|
xcalc
|
|
|
|
xcb-demo
|
|
|
|
xcb-proto
|
|
|
|
xcb-util
|
|
|
|
xcb-util-cursor
|
|
|
|
xcb-util-errors
|
|
|
|
xcb-util-image
|
|
|
|
xcb-util-keysyms
|
|
|
|
xcb-util-renderutil
|
|
|
|
xcb-util-wm
|
|
|
|
xcb-util-xrm
|
|
|
|
xclip
|
|
|
|
xclipboard
|
|
|
|
xclock
|
|
|
|
xcmiscproto
|
|
|
|
xcmsdb
|
|
|
|
xcompmgr
|
|
|
|
xconsole
|
|
|
|
xcursor-themes
|
|
|
|
xcursorgen
|
|
|
|
xdbedizzy
|
|
|
|
xditview
|
|
|
|
xdm
|
|
|
|
xdpyinfo
|
|
|
|
xdriinfo
|
|
|
|
xedit
|
|
|
|
xerces-c
|
|
|
|
xev
|
|
|
|
xextproto
|
|
|
|
xeyes
|
|
|
|
xf86bigfontproto
|
|
|
|
xf86dga
|
|
|
|
xf86dgaproto
|
|
|
|
xf86driproto
|
|
|
|
xf86miscproto
|
|
|
|
xf86rushproto
|
|
|
|
xf86vidmodeproto
|
|
|
|
xfd
|
|
|
|
xfindproxy
|
|
|
|
xfontsel
|
|
|
|
xfs
|
|
|
|
xfsinfo
|
|
|
|
xfwp
|
|
|
|
xgamma
|
|
|
|
xgc
|
|
|
|
xhmm
|
|
|
|
xhost
|
|
|
|
xineramaproto
|
|
|
|
xinit
|
|
|
|
xinput
|
|
|
|
xios
|
|
|
|
xkbcomp
|
|
|
|
xkbdata
|
|
|
|
xkbevd
|
|
|
|
xkbprint
|
|
|
|
xkbutils
|
|
|
|
xkeyboard-config
|
|
|
|
xkill
|
|
|
|
xload
|
|
|
|
xlogo
|
|
|
|
xlsatoms
|
|
|
|
xlsclients
|
|
|
|
xlsfonts
|
|
|
|
xmag
|
|
|
|
xman
|
|
|
|
xmessage
|
|
|
|
xmh
|
|
|
|
xmlf90
|
|
|
|
xmlto
|
|
|
|
xmodmap
|
|
|
|
xmore
|
|
|
|
xorg-cf-files
|
|
|
|
xorg-docs
|
|
|
|
xorg-gtest
|
|
|
|
xorg-server
|
|
|
|
xorg-sgml-doctools
|
|
|
|
xphelloworld
|
|
|
|
xplor-nih
|
|
|
|
xplsprinters
|
|
|
|
xpr
|
|
|
|
xprehashprinterlist
|
|
|
|
xprop
|
|
|
|
xproto
|
|
|
|
xproxymanagementprotocol
|
|
|
|
xqilla
|
|
|
|
xrandr
|
|
|
|
xrdb
|
|
|
|
xrefresh
|
|
|
|
xrootd
|
|
|
|
xrx
|
|
|
|
xsbench
|
fix build errors, make mpi variant default and add openmp variant (#9364)
|
2018-09-26 19:47:51 -06:00 |
|
xscope
|
|
|
|
xsd
|
|
|
|
xsdk
|
xsdk: disable assimp in deal.II (#9190)
|
2018-09-08 16:07:37 -05:00 |
|
xsdktrilinos
|
|
|
|
xset
|
|
|
|
xsetmode
|
|
|
|
xsetpointer
|
|
|
|
xsetroot
|
|
|
|
xsimd
|
|
|
|
xsm
|
|
|
|
xstdcmap
|
|
|
|
xtensor
|
|
|
|
xtensor-python
|
|
|
|
xterm
|
|
|
|
xtl
|
|
|
|
xtrans
|
|
|
|
xtrap
|
|
|
|
xts
|
|
|
|
xvidtune
|
|
|
|
xvinfo
|
|
|
|
xwd
|
|
|
|
xwininfo
|
|
|
|
xwud
|
|
|
|
xxhash
|
|
|
|
xz
|
|
|
|
yajl
|
|
|
|
yambo
|
|
|
|
yaml-cpp
|
yaml-cpp: conflict with gcc 4.7 instead of 4.8 (#9371)
|
2018-09-27 13:37:36 -07:00 |
|
yasm
|
|
|
|
yorick
|
|
|
|
z3
|
|
|
|
zeromq
|
|
|
|
zfp
|
|
|
|
zip
|
|
|
|
zlib
|
|
|
|
zoltan
|
|
|
|
zsh
|
|
|
|
zstd
|
|
|
